Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.H4PP15 Arachis hypogaea HOM05D003993 ORTHO05D005336 5.4e-128 461.1 244 100.0
arahy.Tifrunner.gnm1.ann1.M0TH05 Arachis hypogaea HOM05D003993 ORTHO05D005336 1.8e-115 419.5 221 98.6
Lalb_Chr19g0134741 Lupinus albus HOM05D003993 ORTHO05D005336 4.8e-68 261.9 226 62.4
Lj3g0021702 Lotus japonicus HOM05D003993 ORTHO05D005336 6.3e-68 261.5 223 65.0
arahy.Tifrunner.gnm1.ann1.U93GY2 Arachis hypogaea HOM05D003993 ORTHO05D014907 9.1e-67 257.7 207 69.6
Glyma.12G214500 Glycine max HOM05D003993 ORTHO05D005336 1.0e-65 254.2 223 63.2
Phvul.005G091400 Phaseolus vulgaris HOM05D003993 ORTHO05D005336 2.2e-65 253.1 223 61.9
Ca_01754_v3 Cicer arietinum L. HOM05D003993 ORTHO05D005336 8.5e-65 251.1 224 62.9
Glyma.13G287100 Glycine max HOM05D003993 ORTHO05D005336 8.5e-65 251.1 223 62.3
TPR.G36724 Trifolium pratense HOM05D003993 ORTHO05D005336 1.4e-64 250.4 235 63.0
VMungo1080G1710 Vigna mungo HOM05D003993 ORTHO05D005336 5.5e-64 248.4 223 61.4
Medtr4g081300 Medicago truncatula HOM05D003993 ORTHO05D005336 9.4e-64 247.7 223 61.4
Glyma.12G135700 Glycine max HOM05D003993 ORTHO05D005336 2.7e-63 246.1 224 61.6
Psat5g251760 Pisum sativum HOM05D003993 ORTHO05D005336 6.1e-63 245.0 224 62.5
Medtr2g082910 Medicago truncatula HOM05D003993 ORTHO05D005336 1.4e-62 243.8 224 61.6
Lalb_Chr14g0366101 Lupinus albus HOM05D003993 ORTHO05D005336 2.8e-60 236.1 224 60.3
Lj3g0011163 Lotus japonicus HOM05D003993 ORTHO05D005336 1.1e-59 234.2 225 60.4
Cfa020417 Carpinus fangiana HOM05D003993 ORTHO05D005336 2.0e-58 229.9 211 59.2
arahy.Tifrunner.gnm1.ann1.YETR49 Arachis hypogaea HOM05D003993 ORTHO05D005336 5.0e-57 225.3 224 58.0
Potri.011G132800 Populus trichocarpa HOM05D003993 ORTHO05D005336 3.2e-56 222.6 223 54.3
Psat7g122440 Pisum sativum HOM05D003993 ORTHO05D005336 4.2e-56 222.2 248 52.8
QL08p013350 Quercus lobata HOM05D003993 ORTHO05D005336 5.5e-56 221.9 222 56.8
CiPaw.11G183500 Carya illinoinensis HOM05D003993 ORTHO05D005336 1.2e-55 220.7 222 55.4
arahy.Tifrunner.gnm1.ann1.C7DQ5B Arachis hypogaea HOM05D003993 ORTHO05D005336 2.7e-55 219.5 222 57.2
MD03G1211800 Malus domestica HOM05D003993 ORTHO05D005336 3.6e-55 219.2 222 53.6
Potri.001G417200 Populus trichocarpa HOM05D003993 ORTHO05D005336 3.6e-55 219.2 223 57.0
Dinv22306 Davidia involucrata HOM05D003993 ORTHO05D005336 8.8e-54 214.5 223 54.7
Atru.chr2.3206 Acer truncatum HOM05D003993 ORTHO05D005336 1.2e-53 214.2 223 54.7
Ciclev10007272m.g Citrus clementina HOM05D003993 ORTHO05D005336 3.3e-53 212.6 222 53.6
Prupe.4G202100 Prunus persica HOM05D003993 ORTHO05D005336 1.7e-52 210.3 223 54.3
VMungo1127G1901 Vigna mungo HOM05D003993 ORTHO05D005336 4.8e-52 208.8 223 54.3
CsaV3_3G005470 Cucumis sativus L. HOM05D003993 ORTHO05D005336 1.8e-51 206.8 223 52.9
GSVIVG01014604001 Vitis vinifera HOM05D003993 ORTHO05D005336 7.0e-51 204.9 225 54.7
TWI39G1096 Tripterygium wilfordii HOM05D003993 ORTHO05D005336 1.6e-50 203.8 222 52.7
MD11G1227200 Malus domestica HOM05D003993 ORTHO05D005336 4.5e-50 202.2 223 50.2
ClCG10G005790 Citrullus lanatus HOM05D003993 ORTHO05D005336 5.9e-50 201.8 223 52.0
MELO3C025431.2 Cucumis melo HOM05D003993 ORTHO05D005336 5.9e-50 201.8 223 52.9
Sed0012816 Sechium edule HOM05D003993 ORTHO05D005336 5.9e-50 201.8 223 52.0
TWI38G0109 Tripterygium wilfordii HOM05D003993 ORTHO05D005336 7.7e-50 201.4 222 50.5
TAR626G1606 Trochodendron aralioides HOM05D003993 ORTHO05D005336 7.7e-50 201.4 224 53.1
CSS0014856 Camellia sinensis var. sinensis HOM05D003993 ORTHO05D005336 1.0e-49 201.1 223 50.7
TAR624G0674 Trochodendron aralioides HOM05D003993 ORTHO05D005336 1.0e-49 201.1 227 53.7
Duzib170G0292 Durio zibethinus HOM05D003993 ORTHO05D005336 1.3e-49 200.7 223 52.9
arahy.Tifrunner.gnm1.ann1.D8T6NU Arachis hypogaea HOM05D003993 ORTHO05D005336 1.7e-49 200.3 195 58.5
COL.COLO4_09564 Corchorus olitorius HOM05D003993 ORTHO05D005336 3.8e-49 199.1 223 52.0
Cpa.g.sc97.71 Carica papaya HOM05D003993 ORTHO05D005336 5.0e-49 198.7 222 48.6
Duzib213G0987 Durio zibethinus HOM05D003993 ORTHO05D005336 1.9e-48 196.8 222 51.4
Actinidia09963 Actinidia chinensis HOM05D003993 ORTHO05D005336 5.5e-48 195.3 223 52.5
Nn1g06997 Nelumbo nucifera HOM05D003993 ORTHO05D005336 1.6e-47 193.7 224 49.6
RcHm_v2.0_Chr5g0037331 Rosa chinensis HOM05D003993 ORTHO05D005336 1.6e-47 193.7 225 50.7
Manes.15G076600 Manihot esculenta HOM05D003993 ORTHO05D005336 8.0e-47 191.4 225 50.7
Peaxi162Scf01086g00149 Petunia axillaris HOM05D003993 ORTHO05D005336 1.0e-46 191.0 225 50.2
Aa31LG8G7470 Aethionema arabicum HOM05D003993 ORTHO05D005336 1.4e-46 190.7 220 47.7
CANSAT11G1844 Cannabis sativa HOM05D003993 ORTHO05D005336 5.2e-46 188.7 222 51.4
FAN11G2565 Fragaria x ananassa HOM05D003993 ORTHO05D005336 5.2e-46 188.7 230 49.1
Aqoxy4G02086 Aquilegia oxysepala HOM05D003993 ORTHO05D005336 6.8e-46 188.3 223 49.3
FAN21G2881 Fragaria x ananassa HOM05D003993 ORTHO05D005336 6.8e-46 188.3 224 47.8
arahy.Tifrunner.gnm1.ann1.N54FIB Arachis hypogaea HOM05D003993 ORTHO05D014907 8.8e-46 188.0 104 91.3
FAN16G1112 Fragaria x ananassa HOM05D003993 ORTHO05D005336 8.8e-46 188.0 225 48.9
Nitab4.5_0009192g0040 Nicotiana tabacum HOM05D003993 ORTHO05D005336 1.2e-45 187.6 223 50.2
PGR031G1242 Punica granatum HOM05D003993 ORTHO05D005336 1.2e-45 187.6 220 50.5
vmacro11768 Vaccinium macrocarpon HOM05D003993 ORTHO05D005336 1.2e-45 187.6 224 49.1
Gorai.002G082300 Gossypium raimondii HOM05D003993 ORTHO05D005336 3.4e-45 186.0 223 50.2
Thecc.07G054200 Theobroma cacao HOM05D003993 ORTHO05D005336 5.7e-45 185.3 222 50.0
Eucgr.F03424 Eucalyptus grandis HOM05D003993 ORTHO05D005336 7.5e-45 184.9 218 48.2
Nitab4.5_0000397g0110 Nicotiana tabacum HOM05D003993 ORTHO05D005336 7.5e-45 184.9 225 49.8
AUR62015640 Chenopodium quinoa HOM05D003993 ORTHO05D005336 1.3e-44 184.1 228 49.1
FvH4_3g21780 Fragaria vesca HOM05D003993 ORTHO05D005336 2.2e-44 183.3 230 47.8
AT3G20720 Arabidopsis thaliana HOM05D003993 ORTHO05D005336 6.3e-44 181.8 221 45.7
BcaB04g20636 Brassica carinata HOM05D003993 ORTHO05D005336 6.3e-44 181.8 220 46.8
A01p34110 Brassica napus HOM05D003993 ORTHO05D005336 6.3e-44 181.8 220 47.3
Hund02131 Selenicereus undatus HOM05D003993 ORTHO05D005336 6.3e-44 181.8 226 47.3
AL3G34640 Arabidopsis lyrata HOM05D003993 ORTHO05D005336 8.3e-44 181.4 221 45.7
AUR62020558 Chenopodium quinoa HOM05D003993 ORTHO05D005336 8.3e-44 181.4 223 48.0
Haze_09608 Corylus avellana HOM05D003993 ORTHO05D005336 8.3e-44 181.4 222 49.1
Gohir.A01G074400 Gossypium hirsutum HOM05D003993 ORTHO05D005336 8.3e-44 181.4 223 48.0
Gohir.D01G060900 Gossypium hirsutum HOM05D003993 ORTHO05D005336 1.1e-43 181.0 223 48.4
PSO541G2178 Papaver somniferum HOM05D003993 ORTHO05D005336 1.8e-43 180.3 226 46.5
PSO675G0751 Papaver somniferum HOM05D003993 ORTHO05D005336 3.1e-43 179.5 227 47.1
arahy.Tifrunner.gnm1.ann1.9VYU83 Arachis hypogaea HOM05D003993 ORTHO05D005336 4.1e-43 179.1 115 83.5
EL10Ac4g07982 Beta vulgaris HOM05D003993 ORTHO05D005336 4.1e-43 179.1 223 46.2
C01p43520 Brassica napus HOM05D003993 ORTHO05D005336 5.4e-43 178.7 220 46.4
BolC1t04312H Brassica oleracea HOM05D003993 ORTHO05D005336 5.4e-43 178.7 220 46.4
FAN25G1663 Fragaria x ananassa HOM05D003993 ORTHO05D005336 5.4e-43 178.7 225 47.1
Ah.06g183050 Amaranthus hybridus HOM05D003993 ORTHO05D005336 9.1e-43 177.9 226 46.0
Solyc07g064080.4 Solanum lycopersicum HOM05D003993 ORTHO05D005336 1.6e-42 177.2 225 47.6
BraA01t03515Z Brassica rapa HOM05D003993 ORTHO05D005336 2.0e-42 176.8 220 45.9
Sopen07g032220 Solanum pennellii HOM05D003993 ORTHO05D005336 2.0e-42 176.8 223 47.5
BcaC09g49013 Brassica carinata HOM05D003993 ORTHO05D005336 2.7e-42 176.4 220 45.5
CARHR096540 Cardamine hirsuta HOM05D003993 ORTHO05D005336 2.7e-42 176.4 222 46.4
Oeu032440.1 Olea europaea HOM05D003993 ORTHO05D005336 3.5e-42 176.0 235 45.1
Lsat_1_v5_gn_7_108360 Lactuca sativa HOM05D003993 ORTHO05D005336 5.9e-42 175.3 219 46.6
Sabra11G0119600 Salix brachista HOM05D003993 ORTHO05D005336 5.9e-42 175.3 176 54.0
Carub.0003s2068 Capsella rubella HOM05D003993 ORTHO05D005336 1.7e-41 173.7 221 44.3
HanXRQChr11g0332991 Helianthus annuus HOM05D003993 ORTHO05D005336 2.3e-41 173.3 196 49.0
CAN.G337.149 Capsicum annuum HOM05D003993 ORTHO05D005336 3.8e-41 172.6 221 48.4
arahy.Tifrunner.gnm1.ann1.P0I1SB Arachis hypogaea HOM05D003993 ORTHO05D005336 5.0e-41 172.2 224 50.9
ECA236G0263 Erigeron canadensis HOM05D003993 ORTHO05D005336 2.5e-40 169.9 221 44.8
Thhalv10019934m.g Eutrema salsugineum HOM05D003993 ORTHO05D005336 5.5e-40 168.7 223 43.9
Lj8C165T11 Lonicera japonica HOM05D003993 ORTHO05D005336 5.5e-40 168.7 227 47.1
MBI18_g30688_MAGBIO Magnolia biondii HOM05D003993 ORTHO05D005336 5.5e-40 168.7 233 46.4
Sp3g18740 Schrenkiella parvula HOM05D003993 ORTHO05D005336 5.5e-40 168.7 219 45.7
Cc05_g13220 Coffea canephora HOM05D003993 ORTHO05D005336 1.6e-39 167.2 225 49.8
Migut.H01858 Erythranthe guttata HOM05D003993 ORTHO05D005336 2.1e-39 166.8 227 44.9
DCAR_010016 Daucus carota HOM05D003993 ORTHO05D005336 6.1e-39 165.2 215 44.2
Gohir.A04G022400 Gossypium hirsutum HOM05D003993 ORTHO05D005336 4.0e-38 162.5 232 47.0
SalBow7G3755 Salvia bowleyana HOM05D003993 ORTHO05D005336 6.8e-38 161.8 229 43.2
Gorai.009G427300 Gossypium raimondii HOM05D003993 ORTHO05D005336 8.9e-38 161.4 218 48.2
Sc16g0006470 Simmondsia chinensis HOM05D003993 ORTHO05D005336 8.9e-38 161.4 225 44.4
THA.LOC104817894 Tarenaya hassleriana HOM05D003993 ORTHO05D005336 2.6e-37 159.8 221 40.7
Gohir.D05G365000 Gossypium hirsutum HOM05D003993 ORTHO05D005336 3.7e-36 156.0 218 47.2
SGA_v2.0_scaffold320G48573 Striga asiatica HOM05D003993 ORTHO05D005336 1.4e-35 154.1 229 41.9
CSS0003157 Camellia sinensis var. sinensis HOM05D003993 ORTHO05D005336 6.6e-33 145.2 197 44.7
HPP92_011131 Vanilla planifolia HOM05D003993 ORTHO05D005336 6.6e-33 145.2 229 38.0
unitig_26.g9969 Utricularia gibba HOM05D003993 ORTHO05D005336 2.5e-32 143.3 229 40.2
Hund02134 Selenicereus undatus HOM05D003993 ORTHO05D005336 5.6e-32 142.1 161 47.2
Zm00001eb431410 Zea mays HOM05D003993 ORTHO05D005336 5.6e-32 142.1 227 39.6
Lsat_1_v5_gn_5_5700 Lactuca sativa HOM05D003993 ORTHO05D005336 3.6e-31 139.4 228 39.5
SHI31871 Sapria himalayana HOM05D003993 ORTHO05D005336 8.0e-31 138.3 239 39.3
ECA246G2094 Erigeron canadensis HOM05D003993 ORTHO05D005336 6.8e-30 135.2 214 38.3
Nn1g03663 Nelumbo nucifera HOM05D003993 ORTHO05D005336 5.8e-29 132.1 123 58.5
Os04g0628600 Oryza sativa ssp. japonica HOM05D003993 ORTHO05D005336 7.5e-29 131.7 225 39.1
Gorai.006G047200 Gossypium raimondii HOM05D003993 ORTHO05D005336 6.4e-28 128.6 168 50.0
HanXRQChr08g0234101 Helianthus annuus HOM05D003993 ORTHO05D005336 3.0e-25 119.8 190 38.4
Mapoly0007s0002 Marchantia polymorpha HOM05D003993 ORTHO05D005336 3.7e-20 102.8 201 34.3
SEGI_25073 Sequoiadendron giganteum HOM05D003993 ORTHO05D005336 2.4e-19 100.1 201 32.3
Zm00001eb128700 Zea mays HOM05D003993 ORTHO05D014907 7.0e-19 98.6 133 41.4
Zm00001eb157050 Zea mays HOM05D003993 ORTHO05D011419 6.0e-18 95.5 138 42.8
Pp3c10_1850 Physcomitrium patens HOM05D003993 ORTHO05D005336 2.5e-16 90.1 181 31.5
Gohir.D01G097266 Gossypium hirsutum HOM05D003993 ORTHO05D014907 2.1e-15 87.0 69 62.3
Gorai.001G142700 Gossypium raimondii HOM05D003993 ORTHO05D014907 1.4e-14 84.3 179 35.8
Gohir.A10G041333 Gossypium hirsutum HOM05D003993 ORTHO05D014907 1.8e-14 84.0 69 60.9
Gohir.A05G172101 Gossypium hirsutum HOM05D003993 ORTHO05D014907 1.2e-13 81.3 179 35.2
Gohir.A05G278766 Gossypium hirsutum HOM05D003993 ORTHO05D014907 1.2e-13 81.3 179 35.2
arahy.Tifrunner.gnm1.ann1.5R4HUS Arachis hypogaea HOM05D003993 ORTHO05D014907 2.6e-13 80.1 58 65.5
Gorai.002G111900 Gossypium raimondii HOM05D003993 ORTHO05D014907 2.6e-13 80.1 179 34.6
TPR.G25926 Trifolium pratense HOM05D001139 ORTHO05D000936 3.4e-13 79.7 52 75.0
AagrBONN_evm.TU.Sc2ySwM_344.1679 Anthoceros agrestis HOM05D003993 ORTHO05D005336 4.4e-13 79.3 259 27.8
arahy.Tifrunner.gnm1.ann1.GX0MR1 Arachis hypogaea HOM05D003993 ORTHO05D014907 6.4e-12 75.5 53 67.9
arahy.Tifrunner.gnm1.ann1.SWME7Z Arachis hypogaea HOM05D003993 ORTHO05D014907 1.1e-11 74.7 53 66.0
SMO143G0035 Selaginella moellendorffii HOM05D003993 ORTHO05D005336 7.1e-11 72.0 141 28.4
Gohir.A10G071633 Gossypium hirsutum HOM05D003993 ORTHO05D014907 7.8e-10 68.6 62 56.5
Rhsim05G0077000 Rhododendron simsii HOM05D003003 ORTHO05D008343 6.2e-07 58.9 72 43.1
Zm00001eb272060 Zea mays HOM05D009386 ORTHO05D011419 1.1e-06 58.2 115 36.5
Zm00001eb427350 Zea mays HOM05D009386 ORTHO05D011419 1.1e-06 58.2 115 36.5
Zm00001eb442850 Zea mays HOM05D009386 ORTHO05D011419 1.1e-06 58.2 115 36.5


User provided reference genes

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