Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.H3G4DQ Arachis hypogaea HOM05D002238 ORTHO05D007272 4.5e-225 784.3 395 100.0
arahy.Tifrunner.gnm1.ann1.V2KEMD Arachis hypogaea HOM05D002238 ORTHO05D007272 7.0e-218 760.4 392 98.2
arahy.Tifrunner.gnm1.ann1.BAI8MS Arachis hypogaea HOM05D002238 ORTHO05D007272 1.6e-214 749.2 392 96.7
arahy.Tifrunner.gnm1.ann1.NZP3ZD Arachis hypogaea HOM05D002238 ORTHO05D007272 6.1e-214 747.3 389 97.4
arahy.Tifrunner.gnm1.ann1.U1RD55 Arachis hypogaea HOM05D002238 ORTHO05D007272 2.0e-212 742.3 393 96.2
arahy.Tifrunner.gnm1.ann1.TBR9XZ Arachis hypogaea HOM05D002238 ORTHO05D007272 2.2e-211 738.8 393 94.7
arahy.Tifrunner.gnm1.ann1.Z0G856 Arachis hypogaea HOM05D002238 ORTHO05D007272 1.2e-196 689.9 383 91.4
Lj5g0011751 Lotus japonicus HOM05D002238 ORTHO05D007272 4.9e-147 525.0 387 68.0
TPR.G36878 Trifolium pratense HOM05D002238 ORTHO05D001984 6.7e-144 514.6 379 67.3
Psat6g044800 Pisum sativum HOM05D002238 ORTHO05D001984 2.5e-143 512.7 379 67.3
Ca_12577_v3 Cicer arietinum L. HOM05D002238 ORTHO05D007272 3.3e-143 512.3 392 67.3
VMungo1215G1712 Vigna mungo HOM05D002238 ORTHO05D007272 2.4e-141 506.1 380 66.1
Medtr1g031820 Medicago truncatula HOM05D002238 ORTHO05D001984 1.5e-140 503.4 367 68.7
Glyma.05G173000 Glycine max HOM05D002238 ORTHO05D007272 4.9e-139 498.4 371 66.3
Phvul.003G021200 Phaseolus vulgaris HOM05D002238 ORTHO05D007272 8.4e-139 497.7 381 64.3
Lalb_Chr25g0279781 Lupinus albus HOM05D002238 ORTHO05D007272 3.0e-128 462.6 379 61.7
QL09p012798 Quercus lobata HOM05D002238 ORTHO05D007272 1.4e-117 427.2 403 56.1
Duzib168G0728 Durio zibethinus HOM05D002238 ORTHO05D007272 1.0e-115 421.0 394 56.3
COL.COLO4_00195 Corchorus olitorius HOM05D002238 ORTHO05D007272 1.1e-114 417.5 394 54.8
Thecc.09G149800 Theobroma cacao HOM05D002238 ORTHO05D007272 3.2e-114 416.0 394 55.6
Haze_00046 Corylus avellana HOM05D002238 ORTHO05D007272 6.7e-112 408.3 396 55.1
Prupe.1G474900 Prunus persica HOM05D002238 ORTHO05D007272 8.8e-112 407.9 378 56.3
Gohir.A09G019700 Gossypium hirsutum HOM05D002238 ORTHO05D007272 1.5e-111 407.1 394 53.3
CANSAT54G2252 Cannabis sativa HOM05D002238 ORTHO05D007272 5.7e-111 405.2 384 54.7
Gorai.006G022700 Gossypium raimondii HOM05D002238 ORTHO05D007272 5.7e-111 405.2 394 53.8
Gohir.D09G019000 Gossypium hirsutum HOM05D002238 ORTHO05D007272 7.4e-111 404.8 394 53.3
Dinv30168 Davidia involucrata HOM05D002238 ORTHO05D007272 1.3e-110 404.1 385 56.9
Gohir.1Z049673 Gossypium hirsutum HOM05D002238 ORTHO05D007272 3.7e-110 402.5 394 53.0
Ciclev10010344m.g Citrus clementina HOM05D002238 ORTHO05D007272 6.3e-110 401.7 384 54.2
CiPaw.05G262300 Carya illinoinensis HOM05D002238 ORTHO05D007272 1.1e-109 401.0 396 54.3
RcHm_v2.0_Chr6g0298391 Rosa chinensis HOM05D002238 ORTHO05D007272 1.4e-109 400.6 385 54.0
Manes.16G120100 Manihot esculenta HOM05D002238 ORTHO05D007272 2.4e-109 399.8 395 54.7
AUR62040710 Chenopodium quinoa HOM05D002238 ORTHO05D007272 5.9e-108 395.2 385 53.0
TWI32G0967 Tripterygium wilfordii HOM05D002238 ORTHO05D007272 7.7e-108 394.8 388 53.6
FAN24G3345 Fragaria x ananassa HOM05D002238 ORTHO05D007272 1.7e-107 393.7 375 54.4
MD08G1146200 Malus domestica HOM05D002238 ORTHO05D007272 5.0e-107 392.1 356 56.7
FvH4_2g29530 Fragaria vesca HOM05D002238 ORTHO05D007272 6.5e-107 391.7 375 54.1
AUR62012126 Chenopodium quinoa HOM05D002238 ORTHO05D007272 1.9e-106 390.2 385 51.9
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 5.5e-106 388.7 383 54.6
FAN20G0928 Fragaria x ananassa HOM05D002238 ORTHO05D007272 5.5e-106 388.7 385 53.0
Nitab4.5_0009247g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.6e-105 387.1 393 52.2
Nn2g11964 Nelumbo nucifera HOM05D002238 ORTHO05D007272 3.6e-105 386.0 386 50.3
FAN27G0629 Fragaria x ananassa HOM05D002238 ORTHO05D007272 3.0e-104 382.9 385 52.2
Rhsim02G0195500 Rhododendron simsii HOM05D002238 ORTHO05D007272 3.0e-104 382.9 375 52.8
TAR625G0243 Trochodendron aralioides HOM05D002238 ORTHO05D007272 8.8e-104 381.3 375 51.5
Potri.006G251400 Populus trichocarpa HOM05D002238 ORTHO05D007272 1.2e-103 380.9 397 51.9
Cpa.g.sc533.2 Carica papaya HOM05D002238 ORTHO05D007272 2.6e-103 379.8 354 55.6
Rhsim09G0014000 Rhododendron simsii HOM05D002238 ORTHO05D007272 5.7e-103 378.6 374 52.1
Aqoxy3G03159 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 9.7e-103 377.9 374 51.6
Nitab4.5_0004440g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.7e-102 377.1 370 53.2
Peaxi162Scf00327g00039 Petunia axillaris HOM05D002238 ORTHO05D007272 2.2e-102 376.7 373 52.3
Sopen08g016790 Solanum pennellii HOM05D002238 ORTHO05D007272 4.8e-102 375.6 370 53.0
Lj8C25T21 Lonicera japonica HOM05D002238 ORTHO05D007272 1.1e-101 374.4 395 51.1
Rhsim02G0198300 Rhododendron simsii HOM05D002238 ORTHO05D007272 5.3e-101 372.1 375 51.5
CSS0032500 Camellia sinensis var. sinensis HOM05D002238 ORTHO05D007272 1.2e-100 370.9 372 54.6
ClCG05G017070 Citrullus lanatus HOM05D002238 ORTHO05D007272 1.6e-100 370.5 393 52.4
Peaxi162Scf00108g00063 Petunia axillaris HOM05D002238 ORTHO05D007272 2.7e-100 369.8 395 49.4
PGSC0003DMG400020787 Solanum tuberosum HOM05D002238 ORTHO05D007272 2.7e-100 369.8 370 51.4
Solyc08g061450.3 Solanum lycopersicum HOM05D002238 ORTHO05D007272 5.9e-100 368.6 370 52.7
MBI04_g24206_MAGBIO Magnolia biondii HOM05D002238 ORTHO05D007272 7.7e-100 368.2 392 50.5
EL10Ac2g04715 Beta vulgaris HOM05D002238 ORTHO05D007272 1.7e-99 367.1 384 50.0
Sed0000756 Sechium edule HOM05D002238 ORTHO05D007272 1.7e-99 367.1 388 51.8
Peaxi162Scf00002g00372 Petunia axillaris HOM05D002238 ORTHO05D003453 2.9e-99 366.3 384 51.0
Oeu034743.2 Olea europaea HOM05D002238 ORTHO05D007272 1.5e-98 364.0 366 53.3
DCAR_006233 Daucus carota HOM05D002238 ORTHO05D007272 7.2e-98 361.7 346 54.3
Eucgr.C01786 Eucalyptus grandis HOM05D002238 ORTHO05D007272 7.2e-98 361.7 374 50.5
Cc08_g00970 Coffea canephora HOM05D002238 ORTHO05D007272 2.7e-97 359.8 386 50.0
Actinidia13250 Actinidia chinensis HOM05D002238 ORTHO05D007272 1.0e-96 357.8 353 53.0
Ah.16g102520 Amaranthus hybridus HOM05D002238 ORTHO05D007272 1.4e-96 357.5 385 50.4
Sc11g0007780 Simmondsia chinensis HOM05D002238 ORTHO05D007272 2.3e-96 356.7 357 51.8
PSO349G0250 Papaver somniferum HOM05D002238 ORTHO05D007272 3.7e-94 349.4 380 48.2
Migut.A00055 Erythranthe guttata HOM05D002238 ORTHO05D007272 6.3e-94 348.6 350 52.0
PGR042G2797 Punica granatum HOM05D002238 ORTHO05D007272 1.1e-93 347.8 375 48.0
MELO3C003684.2 Cucumis melo HOM05D002238 ORTHO05D007272 1.8e-93 347.1 376 49.5
PSO017G3814 Papaver somniferum HOM05D002238 ORTHO05D007272 2.4e-93 346.7 380 47.9
CsaV3_3G046550 Cucumis sativus L. HOM05D002238 ORTHO05D007272 5.4e-93 345.5 376 50.3
Aa31LG11G4600 Aethionema arabicum HOM05D002238 ORTHO05D007272 9.1e-93 344.7 393 47.8
CARHR187880 Cardamine hirsuta HOM05D002238 ORTHO05D007272 1.2e-92 344.4 368 51.4
AL6G37300 Arabidopsis lyrata HOM05D002238 ORTHO05D007272 2.7e-92 343.2 398 48.2
C07p42320 Brassica napus HOM05D002238 ORTHO05D007272 4.5e-92 342.4 357 52.4
BolC7t44761H Brassica oleracea HOM05D002238 ORTHO05D007272 7.7e-92 341.7 357 52.4
AT5G25500 Arabidopsis thaliana HOM05D002238 ORTHO05D007272 5.0e-91 339.0 387 48.8
BraA02t08935Z Brassica rapa HOM05D002238 ORTHO05D007272 1.5e-90 337.4 371 49.3
BolC2t12011H Brassica oleracea HOM05D002238 ORTHO05D007272 1.9e-90 337.0 371 49.1
SGA_v2.0_scaffold20G09144 Striga asiatica HOM05D002238 ORTHO05D007272 1.9e-90 337.0 352 50.0
C02p59480 Brassica napus HOM05D002238 ORTHO05D007272 2.5e-90 336.7 385 48.1
Carub.0006s2336 Capsella rubella HOM05D002238 ORTHO05D007272 7.2e-90 335.1 388 47.4
Sabra06G0196500 Salix brachista HOM05D002238 ORTHO05D007272 2.1e-89 333.6 364 51.1
THA.LOC104810431 Tarenaya hassleriana HOM05D002238 ORTHO05D007272 2.8e-89 333.2 368 48.1
A02p39700 Brassica napus HOM05D002238 ORTHO05D007272 3.6e-89 332.8 371 48.5
Sp2g22030 Schrenkiella parvula HOM05D002238 ORTHO05D007272 3.6e-89 332.8 366 48.6
Thhalv10005310m.g Eutrema salsugineum HOM05D002238 ORTHO05D007272 1.5e-87 327.4 358 50.0
Lsat_1_v5_gn_5_105001 Lactuca sativa HOM05D002238 ORTHO05D007272 1.7e-86 323.9 385 48.6
QL01p053808 Quercus lobata HOM05D002238 ORTHO05D007272 2.9e-83 313.2 255 62.4
Peaxi162Scf00108g00056 Petunia axillaris HOM05D002238 ORTHO05D007272 3.8e-83 312.8 344 50.3
Nitab4.5_0009119g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.5e-82 310.1 315 53.3
BraA06t26543Z Brassica rapa HOM05D002238 ORTHO05D007272 4.4e-79 299.3 277 56.3
unitig_32.g11479 Utricularia gibba HOM05D002238 ORTHO05D007272 1.3e-78 297.7 352 44.3
SHI18572 Sapria himalayana HOM05D002238 ORTHO05D007272 4.6e-76 289.3 368 43.2
GSVIVG01035523001 Vitis vinifera HOM05D002238 ORTHO05D007272 1.3e-75 287.7 393 45.3
HanXRQChr13g0402681 Helianthus annuus HOM05D002238 ORTHO05D007272 1.7e-75 287.3 359 45.1
HPP92_000893 Vanilla planifolia HOM05D002238 ORTHO05D007272 4.3e-74 282.7 354 45.5
Nitab4.5_0017994g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 8.0e-73 278.5 295 52.9
Glyma.09G122801 Glycine max HOM05D002238 ORTHO05D007272 3.2e-69 266.5 172 75.0
ATR1156G046 Amborella trichopoda HOM05D002238 ORTHO05D007272 1.9e-66 257.3 264 52.7
Duzib187G0736 Durio zibethinus HOM05D002238 ORTHO05D007272 6.8e-64 248.8 199 62.3
MD15G1119600 Malus domestica HOM05D002238 ORTHO05D007272 3.4e-63 246.5 234 56.4
Peaxi162Scf00365g00022 Petunia axillaris HOM05D002238 ORTHO05D007272 4.1e-61 239.6 302 44.0
QL10p065634 Quercus lobata HOM05D002238 ORTHO05D007272 9.2e-61 238.4 258 49.2
Aqoxy5G03332 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 1.5e-58 231.1 269 45.4
ECA233G3411 Erigeron canadensis HOM05D002238 ORTHO05D007272 3.6e-57 226.5 199 55.3
MD15G1122300 Malus domestica HOM05D002238 ORTHO05D007272 5.8e-55 219.2 267 45.3
Atru.chr7.2387 Acer truncatum HOM05D002238 ORTHO05D007272 3.8e-54 216.5 150 69.3
Zm00001eb090760 Zea mays HOM05D002238 ORTHO05D007272 3.8e-54 216.5 284 44.4
Os11g0207300 Oryza sativa ssp. japonica HOM05D002238 ORTHO05D007272 1.2e-49 201.4 290 40.7
SEGI_41370 Sequoiadendron giganteum HOM05D002238 ORTHO05D007272 1.1e-45 188.3 356 32.9
BcaNung07110 Brassica carinata HOM05D002238 ORTHO05D007272 4.2e-45 186.4 154 60.4
Nitab4.5_0004440g0040 Nicotiana tabacum HOM05D002238 ORTHO05D007272 4.2e-45 186.4 146 63.0
Peaxi162Scf00108g00048 Petunia axillaris HOM05D002238 ORTHO05D007272 1.2e-44 184.9 199 51.3
Nitab4.5_0013543g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.9e-42 177.6 136 66.2
Peaxi162Scf00015g02010 Petunia axillaris HOM05D002238 ORTHO05D004044 2.1e-41 174.1 193 50.3
Atru.chr7.2264 Acer truncatum HOM05D002238 ORTHO05D007272 6.0e-36 156.0 193 43.5
Nitab4.5_0011728g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 3.9e-35 153.3 322 32.6
A06p36210 Brassica napus HOM05D002238 ORTHO05D007272 5.6e-34 149.4 162 51.2
Nitab4.5_0011591g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.8e-32 144.4 111 67.6
QL10p065406 Quercus lobata HOM05D002238 ORTHO05D007272 2.4e-32 144.1 258 35.7
SalBow7G3196 Salvia bowleyana HOM05D002238 ORTHO05D007272 7.6e-31 139.0 179 43.6
Nitab4.5_0002007g0110 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.2e-30 137.5 112 64.3
Nitab4.5_0012587g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 4.9e-30 136.3 277 34.3
SalBow6G2105 Salvia bowleyana HOM05D002238 ORTHO05D007272 2.5e-29 134.0 182 42.9
BcaB07g29994 Brassica carinata HOM05D002238 ORTHO05D007272 6.7e-27 125.9 156 46.8
Nitab4.5_0002007g0090 Nicotiana tabacum HOM05D002238 ORTHO05D007272 9.6e-26 122.1 103 62.1
MD15G1118500 Malus domestica HOM05D002238 ORTHO05D007272 1.4e-21 108.2 83 61.4
Medtr3g118420 Medicago truncatula HOM05D002238 ORTHO05D026268 1.3e-17 95.1 86 57.0
Nitab4.5_0011728g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 8.2e-17 92.4 112 42.0
Nitab4.5_0012587g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 3.1e-16 90.5 112 41.1
Nitab4.5_0002007g0100 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.9e-13 81.3 86 47.7
Atru.chr7.2385 Acer truncatum HOM05D002238 ORTHO05D026268 2.4e-08 64.3 100 37.0
Nitab4.5_0011591g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 4.5e-07 60.1 71 46.5


User provided reference genes

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