Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.H1ATJ8 Arachis hypogaea HOM05D005534 ORTHO05D006642 9.5e-195 683.3 346 100.0
arahy.Tifrunner.gnm1.ann1.A8RPUL Arachis hypogaea HOM05D005534 ORTHO05D006642 4.3e-187 657.9 394 87.3
Medtr3g005730 Medicago truncatula HOM05D005534 ORTHO05D006642 2.6e-144 515.8 340 79.7
Lj3g0019199 Lotus japonicus HOM05D005534 ORTHO05D006642 1.7e-143 513.1 313 83.4
Glyma.04G257200 Glycine max HOM05D005534 ORTHO05D006642 1.1e-142 510.4 329 81.2
Lalb_Chr07g0177551 Lupinus albus HOM05D005534 ORTHO05D006642 1.1e-142 510.4 306 85.3
Glyma.12G242500 Glycine max HOM05D005534 ORTHO05D006642 1.4e-142 510.0 331 80.4
TPR.G25542 Trifolium pratense HOM05D005534 ORTHO05D006642 1.9e-142 509.6 313 84.0
TAR381G0138 Trochodendron aralioides HOM05D005534 ORTHO05D006642 1.0e-140 503.8 323 80.2
Phvul.005G001600 Phaseolus vulgaris HOM05D005534 ORTHO05D006642 4.3e-139 498.4 332 77.7
VMungo1080G0932 Vigna mungo HOM05D005534 ORTHO05D006642 6.3e-138 494.6 319 79.9
Nn1g07947 Nelumbo nucifera HOM05D005534 ORTHO05D006642 3.1e-137 492.3 319 79.3
Manes.18G119700 Manihot esculenta HOM05D005534 ORTHO05D006642 9.0e-137 490.7 344 74.7
TWI18G0032 Tripterygium wilfordii HOM05D005534 ORTHO05D006642 1.5e-136 490.0 310 80.3
Sc19g0002770 Simmondsia chinensis HOM05D005534 ORTHO05D006642 2.0e-136 489.6 325 77.2
Duzib177G1179 Durio zibethinus HOM05D005534 ORTHO05D006642 4.5e-136 488.4 339 75.5
Potri.013G101700 Populus trichocarpa HOM05D005534 ORTHO05D006642 5.9e-136 488.0 346 74.6
GSVIVG01036434001 Vitis vinifera HOM05D005534 ORTHO05D006642 2.2e-135 486.1 339 75.2
RcHm_v2.0_Chr7g0231231 Rosa chinensis HOM05D005534 ORTHO05D006642 2.9e-135 485.7 323 76.2
Gohir.D13G120700 Gossypium hirsutum HOM05D005534 ORTHO05D006642 3.8e-135 485.3 312 79.2
Haze_13929 Corylus avellana HOM05D005534 ORTHO05D006642 1.1e-134 483.8 367 71.1
THA.LOC104800087 Tarenaya hassleriana HOM05D005534 ORTHO05D006642 1.1e-134 483.8 327 75.8
Prupe.1G530500 Prunus persica HOM05D005534 ORTHO05D006642 1.9e-134 483.0 345 72.5
PGSC0003DMG401019416 Solanum tuberosum HOM05D005534 ORTHO05D006642 3.2e-134 482.3 337 72.7
Duzib177G1161 Durio zibethinus HOM05D005534 ORTHO05D006642 4.2e-134 481.9 340 75.0
Migut.J01545 Erythranthe guttata HOM05D005534 ORTHO05D006642 4.2e-134 481.9 314 77.7
ClCG08G000650 Citrullus lanatus HOM05D005534 ORTHO05D006642 5.5e-134 481.5 350 73.1
MD15G1399100 Malus domestica HOM05D005534 ORTHO05D006642 5.5e-134 481.5 328 75.6
QL09p004039 Quercus lobata HOM05D005534 ORTHO05D006642 5.5e-134 481.5 319 76.5
Rhsim12G0004300 Rhododendron simsii HOM05D005534 ORTHO05D006642 5.5e-134 481.5 310 80.0
CsaV3_5G040210 Cucumis sativus L. HOM05D005534 ORTHO05D006642 9.3e-134 480.7 328 75.9
AUR62026718 Chenopodium quinoa HOM05D005534 ORTHO05D006642 3.6e-133 478.8 319 75.9
Thecc.08G173200 Theobroma cacao HOM05D005534 ORTHO05D006642 3.6e-133 478.8 309 77.7
FvH4_5g33060 Fragaria vesca HOM05D005534 ORTHO05D006642 4.6e-133 478.4 340 72.4
Nitab4.5_0000731g0130 Nicotiana tabacum HOM05D005534 ORTHO05D006642 6.1e-133 478.0 337 72.7
Nitab4.5_0006008g0020 Nicotiana tabacum HOM05D005534 ORTHO05D006642 6.1e-133 478.0 337 72.7
Ciclev10020832m.g Citrus clementina HOM05D005534 ORTHO05D006642 7.9e-133 477.6 325 74.8
CAN.G911.34 Capsicum annuum HOM05D005534 ORTHO05D006642 1.0e-132 477.2 318 74.8
Solyc10g012160.3 Solanum lycopersicum HOM05D005534 ORTHO05D006642 1.0e-132 477.2 337 71.5
Atru.chr13.2420 Acer truncatum HOM05D005534 ORTHO05D006642 1.4e-132 476.9 327 74.9
MSTRG.6297 Avicennia marina HOM05D005534 ORTHO05D006642 1.4e-132 476.9 314 76.8
CSS0044704 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 1.4e-132 476.9 312 78.2
ECA234G3974 Erigeron canadensis HOM05D005534 ORTHO05D006642 1.4e-132 476.9 319 76.5
MD04G1240000 Malus domestica HOM05D005534 ORTHO05D006642 1.8e-132 476.5 345 71.6
Lsat_1_v5_gn_5_78481 Lactuca sativa HOM05D005534 ORTHO05D006642 2.3e-132 476.1 320 75.3
PSO017G6214 Papaver somniferum HOM05D005534 ORTHO05D006642 2.3e-132 476.1 322 74.2
MD08G1215200 Malus domestica HOM05D005534 ORTHO05D006642 3.0e-132 475.7 327 74.9
Cc00_g25290 Coffea canephora HOM05D005534 ORTHO05D006642 6.7e-132 474.6 311 78.1
COL.COLO4_05589 Corchorus olitorius HOM05D005534 ORTHO05D006642 1.1e-131 473.8 331 74.9
Eucgr.F04073 Eucalyptus grandis HOM05D005534 ORTHO05D006642 1.1e-131 473.8 322 76.7
Hund26700 Selenicereus undatus HOM05D005534 ORTHO05D006642 1.1e-131 473.8 347 71.5
Sopen10g005920 Solanum pennellii HOM05D005534 ORTHO05D006642 1.1e-131 473.8 318 73.9
Actinidia23022 Actinidia chinensis HOM05D005534 ORTHO05D006642 3.3e-131 472.2 313 78.0
EL10Ac1g01529 Beta vulgaris HOM05D005534 ORTHO05D006642 9.7e-131 470.7 321 75.4
Gorai.013G134900 Gossypium raimondii HOM05D005534 ORTHO05D006642 9.7e-131 470.7 339 72.9
CiPaw.04G011000 Carya illinoinensis HOM05D005534 ORTHO05D006642 2.8e-130 469.2 344 71.8
MBI06_g06677_MAGBIO Magnolia biondii HOM05D005534 ORTHO05D006642 3.7e-130 468.8 303 78.2
Dinv18373 Davidia involucrata HOM05D005534 ORTHO05D006642 1.4e-129 466.8 373 67.6
PGR044G1073 Punica granatum HOM05D005534 ORTHO05D006642 2.4e-129 466.1 370 68.4
Aqoxy2G03821 Aquilegia oxysepala HOM05D005534 ORTHO05D006642 5.3e-129 464.9 342 71.1
SalBow6G6434 Salvia bowleyana HOM05D005534 ORTHO05D006642 5.3e-129 464.9 342 71.1
Oeu034751.1 Olea europaea HOM05D005534 ORTHO05D006642 9.1e-129 464.2 363 67.8
Oeu034752.2 Olea europaea HOM05D005534 ORTHO05D006642 9.1e-129 464.2 363 67.8
HPP92_005621 Vanilla planifolia HOM05D005534 ORTHO05D006642 2.0e-128 463.0 323 72.4
BcaNung06107 Brassica carinata HOM05D005534 ORTHO05D006642 1.7e-127 459.9 334 72.5
CDE02G4760 Ceratophyllum demersum HOM05D005534 ORTHO05D006642 1.7e-127 459.9 316 73.7
Carub.0001s2231 Capsella rubella HOM05D005534 ORTHO05D006642 3.8e-127 458.8 347 69.2
BcaNung06443 Brassica carinata HOM05D005534 ORTHO05D006642 6.5e-127 458.0 330 72.1
QL09p002970 Quercus lobata HOM05D005534 ORTHO05D006642 8.5e-127 457.6 292 78.1
Sp1g20290 Schrenkiella parvula HOM05D005534 ORTHO05D006642 2.5e-126 456.1 340 70.6
vmacro00924 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 3.2e-126 455.7 298 78.2
Thhalv10007396m.g Eutrema salsugineum HOM05D005534 ORTHO05D006642 1.2e-125 453.8 307 75.9
AL1G36350 Arabidopsis lyrata HOM05D005534 ORTHO05D006642 3.6e-125 452.2 347 68.6
CARHR023160 Cardamine hirsuta HOM05D005534 ORTHO05D006642 4.7e-125 451.8 344 68.9
Psat1g000160 Pisum sativum HOM05D005534 ORTHO05D006642 1.0e-124 450.7 291 81.1
AT1G22800 Arabidopsis thaliana HOM05D005534 ORTHO05D006642 2.3e-124 449.5 347 67.7
A09p41950 Brassica napus HOM05D005534 ORTHO05D006642 6.7e-124 448.0 346 69.4
Zm00001eb411080 Zea mays HOM05D005534 ORTHO05D006642 6.7e-124 448.0 322 72.4
Peaxi162Scf00065g00017 Petunia axillaris HOM05D005534 ORTHO05D006642 2.0e-123 446.4 315 71.7
Ca_13980_v3 Cicer arietinum L. HOM05D005534 ORTHO05D006642 4.4e-123 445.3 275 83.6
BolC5t30885H Brassica oleracea HOM05D005534 ORTHO05D006642 1.5e-120 436.8 334 69.5
BraA09t39683Z Brassica rapa HOM05D005534 ORTHO05D006642 1.9e-118 429.9 356 66.6
Gohir.A13G117400 Gossypium hirsutum HOM05D005534 ORTHO05D006642 2.8e-114 416.0 274 77.4
MELO3C022197.2 Cucumis melo HOM05D005534 ORTHO05D006642 4.8e-114 415.2 327 68.2
Aa31LG7G6790 Aethionema arabicum HOM05D005534 ORTHO05D006642 1.2e-112 410.6 374 61.8
DCAR_022334 Daucus carota HOM05D005534 ORTHO05D006642 1.0e-111 407.5 300 72.0
PSO170G0367 Papaver somniferum HOM05D005534 ORTHO05D006642 1.3e-111 407.1 289 72.3
AUR62013571 Chenopodium quinoa HOM05D005534 ORTHO05D006642 1.8e-105 386.7 279 69.9
Mapoly0125s0040 Marchantia polymorpha HOM05D005534 ORTHO05D006642 1.3e-103 380.6 309 64.7
Sabra13G0088100 Salix brachista HOM05D005534 ORTHO05D006642 5.0e-103 378.6 272 73.5
SGA_v2.0_scaffold69G23189 Striga asiatica HOM05D005534 ORTHO05D006642 1.6e-101 373.6 268 73.9
Pp3c3_32560 Physcomitrium patens HOM05D005534 ORTHO05D006642 3.6e-101 372.5 306 63.4
HPP92_005624 Vanilla planifolia HOM05D005534 ORTHO05D006642 1.2e-99 367.5 277 67.9
SMO232G0033 Selaginella moellendorffii HOM05D005534 ORTHO05D006642 5.9e-96 355.1 304 59.5
C05p21900 Brassica napus HOM05D005534 ORTHO05D006642 1.7e-95 353.6 265 70.6
unitig_899.g15650 Utricularia gibba HOM05D005534 ORTHO05D006642 5.2e-92 342.0 203 82.8
Lj1A290T42 Lonicera japonica HOM05D005534 ORTHO05D006642 1.7e-90 337.0 205 82.0
Sed0013677 Sechium edule HOM05D005534 ORTHO05D006642 1.4e-89 334.0 257 68.9
SHI08987 Sapria himalayana HOM05D005534 ORTHO05D006642 1.2e-88 330.9 274 65.0
CBR_g29440 Chara braunii HOM05D000921 ORTHO05D004153 2.0e-88 330.1 318 54.1
Gohir.A13G117500 Gossypium hirsutum HOM05D005534 ORTHO05D006642 2.3e-87 326.6 273 66.3
ATR0681G326 Amborella trichopoda HOM05D005534 ORTHO05D006642 1.9e-86 323.6 235 69.4
FAN18G2794 Fragaria x ananassa HOM05D005534 ORTHO05D006642 7.3e-86 321.6 265 64.5
vmacro22753 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 3.7e-82 309.3 309 57.6
Cre13.g584750 Chlamydomonas reinhardtii HOM05D005534 ORTHO05D006642 1.1e-78 297.7 345 49.9
Cpa.g.sc438.5 Carica papaya HOM05D005534 ORTHO05D006642 7.3e-78 295.0 325 52.6
HPP92_005612 Vanilla planifolia HOM05D005534 ORTHO05D006642 2.1e-77 293.5 200 73.0
Potri.013G101900 Populus trichocarpa HOM05D005534 ORTHO05D006642 1.8e-76 290.4 192 79.2
AagrBONN_evm.TU.Sc2ySwM_117.1319 Anthoceros agrestis HOM05D005534 ORTHO05D006642 2.1e-64 250.4 222 59.9
Lj1A297T60 Lonicera japonica HOM05D005534 ORTHO05D006642 7.8e-64 248.4 148 83.1
TPR.G30718 Trifolium pratense HOM05D005534 ORTHO05D006642 9.5e-62 241.5 249 57.4
CANSAT25G1380 Cannabis sativa HOM05D005534 ORTHO05D006642 3.5e-56 223.0 134 82.8
PRCOL_00005850 Prasinoderma coloniale HOM05D005534 ORTHO05D006642 8.7e-55 218.4 289 45.3
CANSAT25G1946 Cannabis sativa HOM05D005534 ORTHO05D006642 1.1e-52 211.5 184 58.7
Hma1.2p1_0708F.1_g207140 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 4.4e-51 206.1 118 85.6
Hma1.2p1_0708F.1_g207130 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 9.3e-49 198.4 118 82.2
Cfa025826 Carpinus fangiana HOM05D005534 ORTHO05D006642 4.3e-46 189.5 318 37.1
C07p20870 Brassica napus HOM05D005534 ORTHO05D006642 3.6e-45 186.4 130 73.1
BolC7t42620H Brassica oleracea HOM05D005534 ORTHO05D006642 3.6e-45 186.4 130 73.1
CSS0018807 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 3.6e-45 186.4 200 55.0
SEGI_21404 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 5.3e-44 182.6 117 75.2
BcaC06g34996 Brassica carinata HOM05D005534 ORTHO05D006642 2.2e-42 177.2 126 70.6
CSS0033231 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 7.1e-41 172.2 164 61.6
Os12g0203100 Oryza sativa ssp. japonica HOM05D005534 ORTHO05D006642 7.9e-40 168.7 146 61.0
Zm00001eb320410 Zea mays HOM05D005534 ORTHO05D006642 1.3e-37 161.4 134 62.7
A07p14190 Brassica napus HOM05D005534 ORTHO05D006642 2.4e-36 157.1 159 60.4
Lj1A297G57 Lonicera japonica HOM05D005534 ORTHO05D006642 3.2e-33 146.7 87 79.3
Glyma.04G256001 Glycine max HOM05D005534 ORTHO05D006642 5.5e-25 119.4 110 61.8
unitig_899.g15651 Utricularia gibba HOM05D005534 ORTHO05D006642 1.4e-17 94.7 65 73.8
FAN08G1090 Fragaria x ananassa HOM05D005534 ORTHO05D006642 3.2e-17 93.6 106 50.0
SEGI_02632 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 6.7e-15 85.9 69 62.3
Lsat_1_v5_gn_2_74121 Lactuca sativa HOM05D000236 ORTHO05D000192 2.0e-14 84.3 58 70.7
MCO12G480 Micromonas commoda HOM05D005534 ORTHO05D006642 2.2e-13 80.9 110 42.7
HanXRQChr11g0339001 Helianthus annuus HOM05D005534 ORTHO05D006642 6.3e-13 79.3 55 67.3
HPP92_005611 Vanilla planifolia HOM05D000010 ORTHO05D429468 1.0e-10 72.0 63 60.3
TPR.G30727 Trifolium pratense HOM05D005534 ORTHO05D006642 1.1e-09 68.6 46 73.9
Lj1A290G37 Lonicera japonica HOM05D005534 ORTHO05D006642 1.9e-09 67.8 67 59.7
A07p14200 Brassica napus HOM05D002040 ORTHO05D006642 5.5e-09 66.2 80 47.5
Lj1E297T0 Lonicera japonica HOM05D005534 ORTHO05D006642 7.2e-09 65.9 55 65.5
CAN.G1062.3 Capsicum annuum HOM05D005534 ORTHO05D006642 3.6e-08 63.5 87 48.3
Lj1A290T43 Lonicera japonica HOM05D005534 ORTHO05D006642 3.6e-08 63.5 36 75.0
BraA07t29177Z Brassica rapa HOM05D005534 ORTHO05D006642 6.1e-08 62.8 35 80.0
Lsat_1_v5_gn_4_32401 Lactuca sativa HOM05D000240 ORTHO05D001153 6.1e-08 62.8 44 70.5


User provided reference genes

Program Settings