Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.H0NKK3 Arachis hypogaea HOM05D005661 ORTHO05D007997 3.3e-110 401.7 210 100.0
arahy.Tifrunner.gnm1.ann1.PPAS6H Arachis hypogaea HOM05D005661 ORTHO05D007997 7.3e-65 251.1 148 89.9
arahy.Tifrunner.gnm1.ann1.FQN863 Arachis hypogaea HOM05D005661 ORTHO05D007997 2.1e-64 249.6 223 66.4
TPR.G5996 Trifolium pratense HOM05D005661 ORTHO05D007997 4.5e-46 188.7 142 71.8
Medtr4g134540 Medicago truncatula HOM05D005661 ORTHO05D007997 6.0e-43 178.3 132 69.7
Psat0s2555g0200 Pisum sativum HOM05D005661 ORTHO05D007997 1.8e-42 176.8 178 57.3
Aqoxy1G02010 Aquilegia oxysepala HOM05D005661 ORTHO05D007997 6.7e-42 174.9 153 66.7
Nitab4.5_0006159g0030 Nicotiana tabacum HOM05D005661 ORTHO05D007997 1.1e-41 174.1 130 72.3
QL02p103676 Quercus lobata HOM05D005661 ORTHO05D007997 1.1e-41 174.1 138 68.8
CSS0021874 Camellia sinensis var. sinensis HOM05D005661 ORTHO05D007997 1.9e-41 173.3 153 67.3
CAN.G1379.8 Capsicum annuum HOM05D005661 ORTHO05D007997 1.9e-41 173.3 131 71.0
Cpa.g.sc173.2 Carica papaya HOM05D005661 ORTHO05D007997 4.3e-41 172.2 130 72.3
VMungo1215G1111 Vigna mungo HOM05D005661 ORTHO05D007997 4.3e-41 172.2 133 66.2
Atru.chr6.139 Acer truncatum HOM05D005661 ORTHO05D007997 7.4e-41 171.4 143 65.7
Manes.14G146200 Manihot esculenta HOM05D005661 ORTHO05D007997 7.4e-41 171.4 138 65.9
Nitab4.5_0001085g0130 Nicotiana tabacum HOM05D005661 ORTHO05D007997 7.4e-41 171.4 130 70.8
Lsat_1_v5_gn_9_124861 Lactuca sativa HOM05D005661 ORTHO05D007997 9.6e-41 171.0 143 67.1
Potri.004G230200 Populus trichocarpa HOM05D005661 ORTHO05D007997 1.3e-40 170.6 129 72.1
Eucgr.I02806 Eucalyptus grandis HOM05D005661 ORTHO05D007997 1.6e-40 170.2 153 63.4
Manes.14G166900 Manihot esculenta HOM05D005661 ORTHO05D007997 2.1e-40 169.9 138 68.1
MD08G1249400 Malus domestica HOM05D005661 ORTHO05D007997 2.8e-40 169.5 123 73.2
Solyc01g102820.4 Solanum lycopersicum HOM05D005661 ORTHO05D007997 2.8e-40 169.5 133 67.7
Sopen01g045220 Solanum pennellii HOM05D005661 ORTHO05D007997 2.8e-40 169.5 133 67.7
PGSC0003DMG401018218 Solanum tuberosum HOM05D005661 ORTHO05D007997 2.8e-40 169.5 133 67.7
Ciclev10002035m.g Citrus clementina HOM05D005661 ORTHO05D007997 3.7e-40 169.1 116 75.9
Oeu000159.1 Olea europaea HOM05D005661 ORTHO05D007997 3.7e-40 169.1 116 76.7
Prupe.1G586600 Prunus persica HOM05D005661 ORTHO05D007997 4.8e-40 168.7 185 54.6
ECA246G0516 Erigeron canadensis HOM05D005661 ORTHO05D007997 6.2e-40 168.3 130 68.5
MD15G1444200 Malus domestica HOM05D005661 ORTHO05D007997 6.2e-40 168.3 138 67.4
GSVIVG01023131001 Vitis vinifera HOM05D005661 ORTHO05D007997 8.1e-40 167.9 130 70.0
MSTRG.20341 Avicennia marina HOM05D005661 ORTHO05D007997 1.1e-39 167.5 116 74.1
Lalb_Chr07g0176831 Lupinus albus HOM05D005661 ORTHO05D007997 1.1e-39 167.5 170 57.1
Gorai.010G134700 Gossypium raimondii HOM05D005661 ORTHO05D007997 2.4e-39 166.4 116 75.0
MSTRG.16459 Avicennia marina HOM05D005661 ORTHO05D007997 3.1e-39 166.0 130 68.5
ATR1089G013 Amborella trichopoda HOM05D005661 ORTHO05D007997 5.3e-39 165.2 115 74.8
CsaV3_3G006740 Cucumis sativus L. HOM05D005661 ORTHO05D007997 5.3e-39 165.2 143 64.3
Migut.B00706 Erythranthe guttata HOM05D005661 ORTHO05D007997 5.3e-39 165.2 130 69.2
Cfa004424 Carpinus fangiana HOM05D005661 ORTHO05D007997 6.9e-39 164.9 130 67.7
FvH4_5g27480 Fragaria vesca HOM05D005661 ORTHO05D007997 6.9e-39 164.9 153 60.1
Peaxi162Scf00194g01045 Petunia axillaris HOM05D005661 ORTHO05D007997 6.9e-39 164.9 116 75.0
MELO3C016431.2 Cucumis melo HOM05D005661 ORTHO05D007997 9.0e-39 164.5 116 73.3
Sed0000786 Sechium edule HOM05D005661 ORTHO05D007997 9.0e-39 164.5 143 62.2
Actinidia00142 Actinidia chinensis HOM05D005661 ORTHO05D007997 1.2e-38 164.1 144 64.6
Actinidia11729 Actinidia chinensis HOM05D005661 ORTHO05D007997 1.5e-38 163.7 148 65.5
CANSAT01G0358 Cannabis sativa HOM05D005661 ORTHO05D007997 1.5e-38 163.7 143 64.3
THA.LOC104801778 Tarenaya hassleriana HOM05D005661 ORTHO05D007997 1.5e-38 163.7 116 73.3
TAR628G0241 Trochodendron aralioides HOM05D005661 ORTHO05D007997 1.5e-38 163.7 134 67.2
Dinv38445 Davidia involucrata HOM05D005661 ORTHO05D007997 2.0e-38 163.3 174 58.6
FAN04G2212 Fragaria x ananassa HOM05D005661 ORTHO05D007997 2.0e-38 163.3 153 60.1
PSO210G4998 Papaver somniferum HOM05D005661 ORTHO05D007997 2.0e-38 163.3 145 62.1
HanXRQChr05g0153021 Helianthus annuus HOM05D005661 ORTHO05D007997 2.6e-38 162.9 162 59.3
Lj4g0018255 Lotus japonicus HOM05D005661 ORTHO05D007997 2.6e-38 162.9 141 62.4
FAN08G1685 Fragaria x ananassa HOM05D005661 ORTHO05D007997 3.4e-38 162.5 164 58.5
Glyma.17G002400 Glycine max HOM05D005661 ORTHO05D007997 3.4e-38 162.5 162 58.6
DCAR_031998 Daucus carota HOM05D005661 ORTHO05D007997 4.5e-38 162.2 130 67.7
Nn5g27134 Nelumbo nucifera HOM05D005661 ORTHO05D007997 4.5e-38 162.2 115 73.9
RcHm_v2.0_Chr7g0218881 Rosa chinensis HOM05D005661 ORTHO05D007997 5.8e-38 161.8 153 61.4
Thecc.06G064100 Theobroma cacao HOM05D005661 ORTHO05D007997 5.8e-38 161.8 188 52.7
Gohir.A06G112500 Gossypium hirsutum HOM05D005661 ORTHO05D007997 7.6e-38 161.4 116 73.3
unitig_21.g20570 Utricularia gibba HOM05D005661 ORTHO05D007997 7.6e-38 161.4 135 64.4
CiPaw.06G177000 Carya illinoinensis HOM05D005661 ORTHO05D007997 1.3e-37 160.6 116 74.1
DCAR_001732 Daucus carota HOM05D005661 ORTHO05D007997 1.3e-37 160.6 161 62.1
Gohir.D06G117100 Gossypium hirsutum HOM05D005661 ORTHO05D007997 1.3e-37 160.6 163 57.1
PGR142G1782 Punica granatum HOM05D005661 ORTHO05D007997 1.3e-37 160.6 145 59.3
AUR62032486 Chenopodium quinoa HOM05D005661 ORTHO05D007997 2.2e-37 159.8 135 65.9
Sc09g0007750 Simmondsia chinensis HOM05D005661 ORTHO05D007997 2.2e-37 159.8 136 64.0
Ca_13523_v3 Cicer arietinum L. HOM05D005661 ORTHO05D007997 3.8e-37 159.1 101 75.2
MBI06_g17067_MAGBIO Magnolia biondii HOM05D005661 ORTHO05D007997 4.9e-37 158.7 131 64.9
TWI23G0175 Tripterygium wilfordii HOM05D005661 ORTHO05D007997 4.9e-37 158.7 135 65.9
EL10Ac6g13962 Beta vulgaris HOM05D005661 ORTHO05D007997 8.4e-37 157.9 116 72.4
SGA_v2.0_scaffold131G34439 Striga asiatica HOM05D005661 ORTHO05D007997 8.4e-37 157.9 143 63.6
Aa31LG2G7610 Aethionema arabicum HOM05D005661 ORTHO05D007997 1.1e-36 157.5 116 69.8
Rhsim11G0115300 Rhododendron simsii HOM05D005661 ORTHO05D007997 1.1e-36 157.5 126 69.0
Sabra01G0175500 Salix brachista HOM05D005661 ORTHO05D007997 1.1e-36 157.5 115 73.0
Carub.0005s0153 Capsella rubella HOM05D005661 ORTHO05D007997 2.5e-36 156.4 116 69.8
AL5G11770 Arabidopsis lyrata HOM05D005661 ORTHO05D007997 3.2e-36 156.0 116 69.8
FAN13G1518 Fragaria x ananassa HOM05D005661 ORTHO05D007997 3.2e-36 156.0 140 64.3
AT2G02500 Arabidopsis thaliana HOM05D005661 ORTHO05D007997 4.2e-36 155.6 116 69.0
CARHR145060 Cardamine hirsuta HOM05D005661 ORTHO05D007997 4.2e-36 155.6 173 56.1
Cc02_g23630 Coffea canephora HOM05D005661 ORTHO05D007997 5.5e-36 155.2 144 59.0
HanXRQChr09g0249911 Helianthus annuus HOM05D005661 ORTHO05D007997 5.5e-36 155.2 109 75.2
C02p50650 Brassica napus HOM05D005661 ORTHO05D007997 1.2e-35 154.1 160 55.6
AUR62042241 Chenopodium quinoa HOM05D005661 ORTHO05D007997 1.2e-35 154.1 180 53.9
BcaB07g30331 Brassica carinata HOM05D005661 ORTHO05D007997 2.1e-35 153.3 130 63.1
BcaC03g17145 Brassica carinata HOM05D005661 ORTHO05D007997 2.7e-35 152.9 130 62.3
Phvul.003G090900 Phaseolus vulgaris HOM05D005661 ORTHO05D007997 2.7e-35 152.9 143 60.8
BolC2t11148H Brassica oleracea HOM05D005661 ORTHO05D007997 3.5e-35 152.5 144 59.0
ClCG10G007530 Citrullus lanatus HOM05D005661 ORTHO05D007997 3.5e-35 152.5 101 75.2
Ah.02g128470 Amaranthus hybridus HOM05D005661 ORTHO05D007997 6.0e-35 151.8 157 57.3
BraA02t08315Z Brassica rapa HOM05D005661 ORTHO05D007997 6.0e-35 151.8 179 53.6
Sp2g13750 Schrenkiella parvula HOM05D005661 ORTHO05D007997 7.9e-35 151.4 144 59.0
A02p32920 Brassica napus HOM05D005661 ORTHO05D007997 1.3e-34 150.6 144 58.3
Thhalv10004647m.g Eutrema salsugineum HOM05D005661 ORTHO05D007997 1.3e-34 150.6 116 68.1
SEGI_39309 Sequoiadendron giganteum HOM05D005661 ORTHO05D007997 6.7e-34 148.3 136 60.3
CDE04G2298 Ceratophyllum demersum HOM05D005661 ORTHO05D007997 1.9e-33 146.7 106 71.7
SMO367G1090 Selaginella moellendorffii HOM05D005661 ORTHO05D007997 4.3e-33 145.6 116 64.7
HPP92_003715 Vanilla planifolia HOM05D005661 ORTHO05D007997 4.3e-33 145.6 130 60.0
HPP92_003721 Vanilla planifolia HOM05D005661 ORTHO05D007997 4.3e-33 145.6 130 60.0
Zm00001eb365960 Zea mays HOM05D005661 ORTHO05D007997 9.6e-33 144.4 115 64.3
AagrBONN_evm.TU.Sc2ySwM_362.430 Anthoceros agrestis HOM05D005661 ORTHO05D007997 2.8e-32 142.9 102 70.6
Mapoly0006s0146 Marchantia polymorpha HOM05D005661 ORTHO05D007997 6.2e-32 141.7 139 59.0
CDE02G0980 Ceratophyllum demersum HOM05D005661 ORTHO05D007997 8.2e-32 141.4 182 48.4
Zm00001eb145390 Zea mays HOM05D005661 ORTHO05D007997 3.1e-31 139.4 115 62.6
COL.COLO4_31208 Corchorus olitorius HOM05D005661 ORTHO05D007997 5.3e-31 138.7 85 81.2
Pp3c15_1010 Physcomitrium patens HOM05D005661 ORTHO05D007997 1.3e-29 134.0 112 60.7
Lj5A292T55 Lonicera japonica HOM05D005661 ORTHO05D007997 2.9e-29 132.9 85 80.0
Pp3c9_590 Physcomitrium patens HOM05D005661 ORTHO05D007997 3.8e-29 132.5 112 62.5
Dinv29650 Davidia involucrata HOM05D005661 ORTHO05D007997 2.5e-28 129.8 85 77.6
Haze_09964 Corylus avellana HOM05D005661 ORTHO05D007997 3.9e-26 122.5 130 55.4
vmacro01624 Vaccinium macrocarpon HOM05D005661 ORTHO05D007997 3.9e-26 122.5 103 68.0
MCO15G500 Micromonas commoda HOM05D005661 ORTHO05D007997 1.1e-25 120.9 102 65.7
Hund15335 Selenicereus undatus HOM05D005661 ORTHO05D007997 2.5e-25 119.8 71 80.3
CBR_g214 Chara braunii HOM05D005661 ORTHO05D007997 1.8e-23 113.6 111 54.1
FAN08G1519 Fragaria x ananassa HOM05D005661 ORTHO05D210776 5.3e-23 112.1 118 59.3
Cre16.g679669 Chlamydomonas reinhardtii HOM05D005661 ORTHO05D007997 9.0e-23 111.3 181 43.6
HanXRQChr03g0069601 Helianthus annuus HOM05D005661 ORTHO05D007997 4.2e-20 102.4 69 73.9
AUR62030219 Chenopodium quinoa HOM05D005661 ORTHO05D007997 1.0e-18 97.8 78 64.1
CAN.G242.16 Capsicum annuum HOM05D005661 ORTHO05D007997 5.3e-15 85.5 54 74.1
Lj5A292T54 Lonicera japonica HOM05D005661 ORTHO05D007997 1.7e-13 80.5 49 79.6
FvH4_5g27493 Fragaria vesca HOM05D005661 ORTHO05D007997 2.5e-12 76.6 118 44.9
Os01g0887100 Oryza sativa ssp. japonica HOM05D005661 ORTHO05D007997 9.4e-12 74.7 53 66.0
Ca_21047_v3 Cicer arietinum L. HOM05D005661 ORTHO05D147477 1.0e-10 71.2 95 49.5
FAN08G3692 Fragaria x ananassa HOM05D005661 ORTHO05D208506 3.9e-10 69.3 107 45.8
FAN08G0833 Fragaria x ananassa HOM05D005661 ORTHO05D203111 3.3e-09 66.2 74 55.4


User provided reference genes

Program Settings