Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.H05BEB Arachis hypogaea HOM05D004231 ORTHO05D004814 6.5e-90 334.0 160 100.0
arahy.Tifrunner.gnm1.ann1.3XUX0K Arachis hypogaea HOM05D004231 ORTHO05D004814 2.3e-42 176.0 100 85.0
arahy.Tifrunner.gnm1.ann1.9M6UE0 Arachis hypogaea HOM05D004231 ORTHO05D004814 2.3e-42 176.0 100 85.0
ClCG02G003360 Citrullus lanatus HOM05D004231 ORTHO05D004814 1.5e-30 136.7 96 68.8
TPR.G18636 Trifolium pratense HOM05D004231 ORTHO05D004814 1.5e-30 136.7 95 71.6
Medtr5g099180 Medicago truncatula HOM05D004231 ORTHO05D004814 4.5e-30 135.2 91 71.4
Prupe.8G180500 Prunus persica HOM05D004231 ORTHO05D004814 5.8e-30 134.8 95 70.5
MD10G1142000 Malus domestica HOM05D004231 ORTHO05D004814 7.6e-30 134.4 94 70.2
Dinv14175 Davidia involucrata HOM05D004231 ORTHO05D004814 9.9e-30 134.0 91 70.3
LjContig00081g0001175 Lotus japonicus HOM05D004231 ORTHO05D004814 9.9e-30 134.0 93 73.1
Lalb_Chr12g0208621 Lupinus albus HOM05D004231 ORTHO05D004814 9.9e-30 134.0 106 65.1
MELO3C015708.2 Cucumis melo HOM05D004231 ORTHO05D004814 1.3e-29 133.7 94 69.1
CsaV3_7G001970 Cucumis sativus L. HOM05D004231 ORTHO05D004814 1.3e-29 133.7 94 69.1
Lsat_1_v5_gn_8_121420 Lactuca sativa HOM05D004231 ORTHO05D004814 4.9e-29 131.7 93 63.4
Lalb_Chr07g0189301 Lupinus albus HOM05D004231 ORTHO05D004814 6.4e-29 131.3 99 64.6
Lsat_1_v5_gn_4_71321 Lactuca sativa HOM05D004231 ORTHO05D004814 8.4e-29 131.0 90 65.6
ECA233G1094 Erigeron canadensis HOM05D004231 ORTHO05D004814 1.4e-28 130.2 90 67.8
TPR.G5084 Trifolium pratense HOM05D004231 ORTHO05D004814 1.4e-28 130.2 97 69.1
TWI75G1214 Tripterygium wilfordii HOM05D004231 ORTHO05D004814 1.4e-28 130.2 95 65.3
Manes.01G017200 Manihot esculenta HOM05D004231 ORTHO05D004814 1.9e-28 129.8 95 70.5
CANSAT25G0301 Cannabis sativa HOM05D004231 ORTHO05D004814 2.4e-28 129.4 94 66.0
FAN15G0610 Fragaria x ananassa HOM05D004231 ORTHO05D004814 3.2e-28 129.0 95 68.4
RcHm_v2.0_Chr6g0280961 Rosa chinensis HOM05D004231 ORTHO05D004814 3.2e-28 129.0 95 68.4
Sed0027682 Sechium edule HOM05D004231 ORTHO05D004814 4.2e-28 128.6 94 68.1
Cfa005374 Carpinus fangiana HOM05D004231 ORTHO05D004814 5.4e-28 128.3 91 69.2
Glyma.14G001000 Glycine max HOM05D004231 ORTHO05D004814 5.4e-28 128.3 90 71.1
Actinidia17992 Actinidia chinensis HOM05D004231 ORTHO05D004814 7.1e-28 127.9 91 67.0
CiPaw.05G093400 Carya illinoinensis HOM05D004231 ORTHO05D004814 7.1e-28 127.9 90 70.0
Ca_10777_v3 Cicer arietinum L. HOM05D004231 ORTHO05D004814 7.1e-28 127.9 96 68.8
HanXRQChr16g0515121 Helianthus annuus HOM05D004231 ORTHO05D004814 7.1e-28 127.9 92 66.3
FvH4_2g16830 Fragaria vesca HOM05D004231 ORTHO05D004814 9.3e-28 127.5 95 67.4
FAN24G0296 Fragaria x ananassa HOM05D004231 ORTHO05D004814 9.3e-28 127.5 95 67.4
FAN27G2171 Fragaria x ananassa HOM05D004231 ORTHO05D004814 9.3e-28 127.5 95 66.3
Psat2g000800 Pisum sativum HOM05D004231 ORTHO05D004814 1.6e-27 126.7 90 67.8
CSS0007201 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 2.1e-27 126.3 91 67.0
QL05p043527 Quercus lobata HOM05D004231 ORTHO05D004814 2.1e-27 126.3 100 64.0
Nn7g36283 Nelumbo nucifera HOM05D004231 ORTHO05D004814 2.7e-27 125.9 97 62.9
Potri.009G168400 Populus trichocarpa HOM05D004231 ORTHO05D004814 2.7e-27 125.9 95 67.4
Potri.004G207000 Populus trichocarpa HOM05D004231 ORTHO05D004814 3.5e-27 125.6 94 69.1
Sabra04G0139300 Salix brachista HOM05D004231 ORTHO05D004814 4.6e-27 125.2 94 68.1
Sed0021373 Sechium edule HOM05D004231 ORTHO05D004814 4.6e-27 125.2 93 68.8
Ciclev10028700m.g Citrus clementina HOM05D004231 ORTHO05D004814 7.9e-27 124.4 95 65.3
Phvul.008G292300 Phaseolus vulgaris HOM05D004231 ORTHO05D004814 7.9e-27 124.4 93 66.7
Hma1.2p1_0652F.1_g195880 Hydrangea macrophylla HOM05D004231 ORTHO05D004814 1.0e-26 124.0 100 60.0
Oeu005953.1 Olea europaea HOM05D004231 ORTHO05D004814 1.0e-26 124.0 90 66.7
SalBow7G0905 Salvia bowleyana HOM05D004231 ORTHO05D004814 1.0e-26 124.0 100 65.0
Peaxi162Scf00362g00110 Petunia axillaris HOM05D004231 ORTHO05D004814 1.8e-26 123.2 99 62.6
ECA236G1252 Erigeron canadensis HOM05D000103 ORTHO05D000049 2.3e-26 122.9 90 64.4
Migut.N00847 Erythranthe guttata HOM05D004231 ORTHO05D004814 2.3e-26 122.9 90 65.6
Atru.chr5.3560 Acer truncatum HOM05D004231 ORTHO05D004814 3.0e-26 122.5 95 66.3
CiPaw.06G115200 Carya illinoinensis HOM05D004231 ORTHO05D004814 3.0e-26 122.5 90 68.9
VMungo0331G0717 Vigna mungo HOM05D004231 ORTHO05D004814 3.0e-26 122.5 89 68.5
PGR042G2635 Punica granatum HOM05D004231 ORTHO05D004814 3.9e-26 122.1 103 60.2
Nn2g15251 Nelumbo nucifera HOM05D004231 ORTHO05D004814 5.1e-26 121.7 96 62.5
Nitab4.5_0000783g0100 Nicotiana tabacum HOM05D004231 ORTHO05D004814 8.7e-26 120.9 91 64.8
Cpa.g.sc60.14 Carica papaya HOM05D004231 ORTHO05D004814 1.1e-25 120.6 95 64.2
PGSC0003DMG400014663 Solanum tuberosum HOM05D000109 ORTHO05D004814 1.5e-25 120.2 93 61.3
RhsimUnG0022900 Rhododendron simsii HOM05D004231 ORTHO05D004814 1.9e-25 119.8 92 64.1
Sopen01g054320 Solanum pennellii HOM05D004231 ORTHO05D004814 1.9e-25 119.8 93 61.3
unitig_0.g2083 Utricularia gibba HOM05D004231 ORTHO05D004814 1.9e-25 119.8 91 65.9
CSS0030147 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 3.3e-25 119.0 97 59.8
PSO541G6356 Papaver somniferum HOM05D004231 ORTHO05D004814 4.3e-25 118.6 99 58.6
PSO675G1855 Papaver somniferum HOM05D004231 ORTHO05D004814 4.3e-25 118.6 99 58.6
SGA_v2.0_scaffold36G14389 Striga asiatica HOM05D004231 ORTHO05D004814 5.6e-25 118.2 91 63.7
Duzib052G0175 Durio zibethinus HOM05D004231 ORTHO05D004814 1.3e-24 117.1 93 64.5
EL10Ac9g21537 Beta vulgaris HOM05D004231 ORTHO05D004814 2.1e-24 116.3 91 64.8
PSO063G5124 Papaver somniferum HOM05D004231 ORTHO05D004814 2.1e-24 116.3 100 59.0
PSO782G1111 Papaver somniferum HOM05D004231 ORTHO05D004814 2.1e-24 116.3 105 57.1
SHI25239 Sapria himalayana HOM05D004231 ORTHO05D004814 2.1e-24 116.3 96 61.5
Cc11_g00240 Coffea canephora HOM05D004231 ORTHO05D004814 2.8e-24 115.9 90 63.3
Solyc04g008760.3 Solanum lycopersicum HOM05D004231 ORTHO05D004814 4.8e-24 115.2 94 63.8
PGSC0003DMG400025309 Solanum tuberosum HOM05D004231 ORTHO05D004814 4.8e-24 115.2 94 63.8
Thecc.02G146400 Theobroma cacao HOM05D004231 ORTHO05D004814 4.8e-24 115.2 96 61.5
Psat2g000680 Pisum sativum HOM05D004231 ORTHO05D004814 6.2e-24 114.8 97 61.9
MSTRG.25000 Avicennia marina HOM05D004231 ORTHO05D004814 1.1e-23 114.0 91 62.6
CDE05G2018 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 1.1e-23 114.0 92 55.4
Sopen04g003940 Solanum pennellii HOM05D004231 ORTHO05D004814 1.1e-23 114.0 94 62.8
SGA_v2.0_scaffold172G39001 Striga asiatica HOM05D004231 ORTHO05D004814 1.1e-23 114.0 93 61.3
AL3G50130 Arabidopsis lyrata HOM05D004231 ORTHO05D004814 1.4e-23 113.6 95 63.2
BcaB03g16474 Brassica carinata HOM05D004231 ORTHO05D004814 1.4e-23 113.6 95 63.2
C09p13290 Brassica napus HOM05D004231 ORTHO05D004814 1.4e-23 113.6 95 63.2
BolC9t54222H Brassica oleracea HOM05D004231 ORTHO05D004814 1.4e-23 113.6 95 63.2
Carub.0003s3121 Capsella rubella HOM05D004231 ORTHO05D004814 1.4e-23 113.6 95 63.2
CDE05G1267 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 1.4e-23 113.6 92 55.4
Nitab4.5_0000129g0030 Nicotiana tabacum HOM05D004231 ORTHO05D004814 1.4e-23 113.6 102 59.8
Nitab4.5_0008730g0040 Nicotiana tabacum HOM05D004231 ORTHO05D004814 1.4e-23 113.6 102 59.8
AT2G17265 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 1.8e-23 113.2 95 62.1
BcaC04g22982 Brassica carinata HOM05D004231 ORTHO05D004814 1.8e-23 113.2 95 63.2
C07p06030 Brassica napus HOM05D004231 ORTHO05D004814 1.8e-23 113.2 95 62.1
BcaB07g31737 Brassica carinata HOM05D004231 ORTHO05D004814 2.4e-23 112.8 95 62.1
Thhalv10022738m.g Eutrema salsugineum HOM05D004231 ORTHO05D004814 2.4e-23 112.8 95 63.2
Sp3g30610 Schrenkiella parvula HOM05D004231 ORTHO05D004814 2.4e-23 112.8 95 63.2
VMungo0647G1050 Vigna mungo HOM05D004231 ORTHO05D004814 3.1e-23 112.5 90 61.1
CARHR293610 Cardamine hirsuta HOM05D004231 ORTHO05D004814 4.0e-23 112.1 95 62.1
BcaB03g16477 Brassica carinata HOM05D004231 ORTHO05D004814 5.3e-23 111.7 95 61.1
BcaB03g16478 Brassica carinata HOM05D004231 ORTHO05D004814 5.3e-23 111.7 95 61.1
BcaC01g02941 Brassica carinata HOM05D004231 ORTHO05D004814 5.3e-23 111.7 95 62.1
A06p34120 Brassica napus HOM05D004231 ORTHO05D004814 5.3e-23 111.7 95 62.1
A09p11260 Brassica napus HOM05D004231 ORTHO05D004814 5.3e-23 111.7 95 61.1
C03p58080 Brassica napus HOM05D004231 ORTHO05D004814 5.3e-23 111.7 95 62.1
BolC3t18081H Brassica oleracea HOM05D004231 ORTHO05D004814 5.3e-23 111.7 95 62.1
BolC7t41016H Brassica oleracea HOM05D004231 ORTHO05D004814 5.3e-23 111.7 95 61.1
BraA06t26345Z Brassica rapa HOM05D004231 ORTHO05D004814 5.3e-23 111.7 95 62.1
BraA09t36767Z Brassica rapa HOM05D004231 ORTHO05D004814 5.3e-23 111.7 95 61.1
Ah.01g009950 Amaranthus hybridus HOM05D004231 ORTHO05D004814 6.9e-23 111.3 91 63.7
A07p03760 Brassica napus HOM05D004231 ORTHO05D004814 6.9e-23 111.3 95 61.1
BraA07t28164Z Brassica rapa HOM05D004231 ORTHO05D004814 6.9e-23 111.3 95 61.1
CARHR243620 Cardamine hirsuta HOM05D004231 ORTHO05D004814 1.2e-22 110.5 96 60.4
Aa31LG2G14870 Aethionema arabicum HOM05D004231 ORTHO05D004814 1.5e-22 110.2 95 62.1
CAN.G5871.1 Capsicum annuum HOM05D004231 ORTHO05D004814 1.5e-22 110.2 94 57.4
Sc08g0002160 Simmondsia chinensis HOM05D004231 ORTHO05D004814 2.0e-22 109.8 94 58.5
Carub.0007s0500 Capsella rubella HOM05D004231 ORTHO05D004814 4.5e-22 108.6 91 64.8
Aqoxy1G01703 Aquilegia oxysepala HOM05D004231 ORTHO05D004814 5.8e-22 108.2 90 57.8
MBI18_g17319_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 7.6e-22 107.8 100 54.0
Peaxi162Scf00329g00312 Petunia axillaris HOM05D004231 ORTHO05D004814 7.6e-22 107.8 101 57.4
DCAR_006270 Daucus carota HOM05D004231 ORTHO05D004814 1.7e-21 106.7 90 60.0
AUR62010176 Chenopodium quinoa HOM05D004231 ORTHO05D004814 2.2e-21 106.3 82 65.9
AUR62013177 Chenopodium quinoa HOM05D004231 ORTHO05D004814 2.2e-21 106.3 82 65.9
MBI15_g18193_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 8.4e-21 104.4 97 53.6
QL08p042586 Quercus lobata HOM05D004231 ORTHO05D004814 5.5e-20 101.7 92 58.7
COL.COLO4_34312 Corchorus olitorius HOM05D000109 ORTHO05D000520 9.3e-20 100.9 81 65.4
ATR0177G062 Amborella trichopoda HOM05D004231 ORTHO05D004814 3.5e-19 99.0 93 51.6
SMO351G0181 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 3.5e-19 99.0 105 51.4
QL03p013131 Quercus lobata HOM05D004231 ORTHO05D004814 6.0e-19 98.2 85 58.8
QL06p003747 Quercus lobata HOM05D003236 ORTHO05D003620 1.0e-18 97.4 80 60.0
HPP92_007738 Vanilla planifolia HOM05D004231 ORTHO05D004814 8.7e-18 94.4 92 50.0
BcaC06g36249 Brassica carinata HOM05D004231 ORTHO05D004814 1.9e-17 93.2 79 63.3
ATR0810G109 Amborella trichopoda HOM05D004231 ORTHO05D004814 1.3e-16 90.5 100 49.0
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 2.1e-16 89.7 91 52.7
Os02g0831800 Oryza sativa ssp. japonica HOM05D004231 ORTHO05D004814 4.0e-15 85.5 96 45.8
BcaB08g34717 Brassica carinata HOM05D004231 ORTHO05D004814 2.6e-14 82.8 84 54.8
Mapoly0173s0009 Marchantia polymorpha HOM05D004231 ORTHO05D004814 1.7e-13 80.1 94 43.6
SEGI_38009 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 1.7e-13 80.1 79 54.4
MBI10_g41732_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 3.8e-13 79.0 75 49.3
Pp3c5_14900 Physcomitrium patens HOM05D004231 ORTHO05D004814 6.5e-13 78.2 103 45.6
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 6.5e-13 78.2 100 45.0
Gohir.A03G170800 Gossypium hirsutum HOM05D004231 ORTHO05D004814 8.4e-13 77.8 68 58.8
Gohir.D02G193900 Gossypium hirsutum HOM05D004231 ORTHO05D004814 8.4e-13 77.8 68 58.8
Gorai.005G216700 Gossypium raimondii HOM05D004231 ORTHO05D004814 8.4e-13 77.8 68 58.8
Cre02.g082250 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 1.3e-10 70.5 83 45.8
unitig_747.g21541 Utricularia gibba HOM05D006537 ORTHO05D008186 2.5e-09 66.2 74 51.4
FAN25G3338 Fragaria x ananassa HOM05D004231 ORTHO05D004814 5.7e-09 65.1 63 58.7
FAN23G0549 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.2e-08 63.2 76 51.3
FAN23G1162 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.2e-08 63.2 76 51.3
FAN05G5401 Fragaria x ananassa HOM05D004231 ORTHO05D004814 6.3e-08 61.6 63 54.0
FAN07G1153 Fragaria x ananassa HOM05D004231 ORTHO05D004814 6.3e-08 61.6 59 57.6
FAN05G3570 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.4e-07 60.5 59 57.6
FAN15G0284 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.4e-07 60.5 59 57.6
TAR625G0853 Trochodendron aralioides HOM05D000369 ORTHO05D000253 9.0e-07 57.8 45 60.0
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 2.0e-06 56.6 44 65.9
FAN04G2646 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.0e-06 56.6 59 54.2


User provided reference genes

Program Settings