Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.H056B9 Arachis hypogaea HOM05D007792 ORTHO05D009931 3.2e-41 171.4 90 100.0
LjContig00318g0025275 Lotus japonicus HOM05D007792 ORTHO05D009931 6.6e-31 137.1 122 66.4
arahy.Tifrunner.gnm1.ann1.81C611 Arachis hypogaea HOM05D007792 ORTHO05D009931 2.5e-30 135.2 96 80.2
Glyma.12G232100 Glycine max HOM05D007792 ORTHO05D009931 5.6e-30 134.0 117 66.7
Lalb_Chr07g0192061 Lupinus albus HOM05D007792 ORTHO05D009931 2.8e-29 131.7 118 66.1
Lalb_Chr08g0237911 Lupinus albus HOM05D007792 ORTHO05D009931 2.8e-29 131.7 118 66.1
Phvul.002G090500 Phaseolus vulgaris HOM05D007792 ORTHO05D009931 8.1e-29 130.2 117 65.0
Medtr4g034720 Medicago truncatula HOM05D007792 ORTHO05D009931 3.4e-27 124.8 120 62.5
Oeu028775.1 Olea europaea HOM05D007792 ORTHO05D009931 1.1e-25 119.8 116 60.3
Oeu058366.1 Olea europaea HOM05D007792 ORTHO05D009931 1.1e-25 119.8 116 60.3
Solyc00g180440.1 Solanum lycopersicum HOM05D007792 ORTHO05D009931 1.4e-25 119.4 74 82.4
PGR111G0084 Punica granatum HOM05D007792 ORTHO05D009931 2.4e-25 118.6 116 60.3
Sed0001088 Sechium edule HOM05D007792 ORTHO05D009931 2.4e-25 118.6 114 61.4
MELO3C027088.2 Cucumis melo HOM05D007792 ORTHO05D009931 4.1e-25 117.9 116 60.3
SalBow1G1024 Salvia bowleyana HOM05D007792 ORTHO05D009931 4.1e-25 117.9 115 59.1
Sed0026344 Sechium edule HOM05D007792 ORTHO05D009931 4.1e-25 117.9 116 60.3
Sed0027103 Sechium edule HOM05D007792 ORTHO05D009931 4.1e-25 117.9 116 60.3
RcHm_v2.0_CPg0502001 Rosa chinensis HOM05D007792 ORTHO05D009931 7.1e-25 117.1 116 59.5
HanXRQChr01g0020291 Helianthus annuus HOM05D007792 ORTHO05D009931 1.2e-24 116.3 116 59.5
HanXRQChr04g0094291 Helianthus annuus HOM05D007792 ORTHO05D009931 1.2e-24 116.3 116 59.5
HanXRQChr10g0283611 Helianthus annuus HOM05D007792 ORTHO05D009931 1.2e-24 116.3 116 59.5
HanXRQChr10g0284301 Helianthus annuus HOM05D007792 ORTHO05D009931 1.2e-24 116.3 116 59.5
HanXRQChr10g0318141 Helianthus annuus HOM05D007792 ORTHO05D009931 1.2e-24 116.3 116 59.5
HanXRQChr11g0326891 Helianthus annuus HOM05D007792 ORTHO05D009931 1.2e-24 116.3 116 59.5
HanXRQCPg0580101 Helianthus annuus HOM05D007792 ORTHO05D009931 1.2e-24 116.3 116 59.5
HanXRQChr04g0095111 Helianthus annuus HOM05D007792 ORTHO05D009931 1.6e-24 115.9 116 58.6
CAN.G1148.9 Capsicum annuum HOM05D007792 ORTHO05D009931 2.1e-24 115.5 115 60.0
CAN.G2018.13 Capsicum annuum HOM05D007792 ORTHO05D009931 2.1e-24 115.5 115 60.0
CAN.G438.83 Capsicum annuum HOM05D007792 ORTHO05D009931 2.1e-24 115.5 115 60.0
Medtr7g085940 Medicago truncatula HOM05D007792 ORTHO05D009931 2.1e-24 115.5 71 85.9
Gohir.D01G101995 Gossypium hirsutum HOM05D007792 ORTHO05D009931 2.7e-24 115.2 115 59.1
Oeu053978.1 Olea europaea HOM05D007792 ORTHO05D009931 3.5e-24 114.8 74 78.4
PSO548G0123 Papaver somniferum HOM05D007792 ORTHO05D009931 4.6e-24 114.4 116 57.8
DCAR_032507 Daucus carota HOM05D007792 ORTHO05D009931 6.0e-24 114.0 116 57.8
Lalb_Chr23g0274331 Lupinus albus HOM05D007792 ORTHO05D009931 7.8e-24 113.6 69 87.0
AL2G21630 Arabidopsis lyrata HOM05D007792 ORTHO05D009931 1.0e-23 113.2 74 75.7
ATCG00660 Arabidopsis thaliana HOM05D007792 ORTHO05D009931 1.0e-23 113.2 74 75.7
CARHR282170 Cardamine hirsuta HOM05D007792 ORTHO05D009931 1.0e-23 113.2 74 75.7
Gohir.A12G229400 Gossypium hirsutum HOM05D007792 ORTHO05D009931 1.0e-23 113.2 115 58.3
HanXRQChr02g0052571 Helianthus annuus HOM05D007792 ORTHO05D009931 1.0e-23 113.2 116 58.6
Nn021s41529 Nelumbo nucifera HOM05D007792 ORTHO05D009931 1.0e-23 113.2 119 55.5
Sc09g0009720 Simmondsia chinensis HOM05D007792 ORTHO05D001488 3.9e-23 111.3 69 81.2
Solyc11g063720.1 Solanum lycopersicum HOM05D007792 ORTHO05D009931 3.9e-23 111.3 74 75.7
Solyc11g063440.3 Solanum lycopersicum HOM05D007792 ORTHO05D009931 5.1e-23 110.9 74 75.7
Nn6g32081 Nelumbo nucifera HOM05D007792 ORTHO05D009931 1.9e-22 109.0 71 77.5
arahy.Tifrunner.gnm1.ann1.4Z8JUD Arachis hypogaea HOM05D007792 ORTHO05D009931 2.5e-22 108.6 95 66.3
BNapus_Darmor_BZH_scaffold_287p00200 Brassica napus HOM05D007792 ORTHO05D009931 3.3e-22 108.2 115 53.9
C02p43590 Brassica napus HOM05D007792 ORTHO05D009931 3.3e-22 108.2 115 53.9
C06p22950 Brassica napus HOM05D007792 ORTHO05D009931 3.3e-22 108.2 115 53.9
BolSC29t60598H Brassica oleracea HOM05D007792 ORTHO05D009931 3.3e-22 108.2 115 53.9
BolSC47t61086H Brassica oleracea HOM05D007792 ORTHO05D009931 3.3e-22 108.2 115 53.9
BraSC138t45565Z Brassica rapa HOM05D007792 ORTHO05D009931 3.3e-22 108.2 115 53.9
BraSC25t45855Z Brassica rapa HOM05D007792 ORTHO05D009931 3.3e-22 108.2 115 53.9
BraSC58t46432Z Brassica rapa HOM05D007792 ORTHO05D009931 3.3e-22 108.2 115 53.9
Solyc11g063660.1 Solanum lycopersicum HOM05D007792 ORTHO05D009931 3.3e-22 108.2 74 73.0
Sc22g0003450 Simmondsia chinensis HOM05D002194 ORTHO05D002840 1.2e-21 106.3 69 78.3
BolSC29t60477H Brassica oleracea HOM05D007792 ORTHO05D009931 2.1e-21 105.5 69 76.8
Sed0005117 Sechium edule HOM05D007792 ORTHO05D009931 1.4e-20 102.8 100 62.0
BolC6t36199H Brassica oleracea HOM05D007792 ORTHO05D009931 1.8e-20 102.4 115 51.3
MELO3C028023.2 Cucumis melo HOM05D007792 ORTHO05D009931 2.4e-20 102.1 108 56.5
BraSC58t46493Z Brassica rapa HOM05D007792 ORTHO05D009931 1.2e-19 99.8 117 51.3
Aqoxy2G00943 Aquilegia oxysepala HOM05D007792 ORTHO05D009931 1.5e-19 99.4 71 73.2
C04p42970 Brassica napus HOM05D007792 ORTHO05D009931 2.0e-19 99.0 69 73.9
CARHR287410 Cardamine hirsuta HOM05D007792 ORTHO05D009931 2.6e-19 98.6 73 68.5
Glyma.01G201700 Glycine max HOM05D007792 ORTHO05D009931 1.3e-18 96.3 117 53.0
Gohir.A02G053101 Gossypium hirsutum HOM05D007792 ORTHO05D009931 1.7e-18 95.9 111 51.4
BolC2t08921H Brassica oleracea HOM05D007792 ORTHO05D009931 6.4e-18 94.0 69 69.6
Gohir.D09G044333 Gossypium hirsutum HOM05D007792 ORTHO05D009931 1.9e-17 92.4 100 55.0
Gohir.A11G230404 Gossypium hirsutum HOM05D007792 ORTHO05D009931 9.2e-17 90.1 100 54.0
SGA_v2.0_scaffold479G52248 Striga asiatica HOM05D007792 ORTHO05D009931 1.7e-15 85.9 114 49.1
MELO3C028123.2 Cucumis melo HOM05D007792 ORTHO05D009931 1.9e-14 82.4 94 53.2
Gorai.011G046100 Gossypium raimondii HOM05D007792 ORTHO05D009931 3.3e-14 81.6 100 52.0
Gorai.001G063300 Gossypium raimondii HOM05D007792 ORTHO05D009931 7.3e-14 80.5 79 58.2
Gorai.012G094800 Gossypium raimondii HOM05D007792 ORTHO05D009931 4.7e-13 77.8 97 48.5
Gohir.A10G134900 Gossypium hirsutum HOM05D007792 ORTHO05D009931 3.1e-12 75.1 87 52.9
Gohir.D04G084960 Gossypium hirsutum HOM05D007792 ORTHO05D009931 9.0e-12 73.6 97 46.4
BolC8t52434H Brassica oleracea HOM05D007792 ORTHO05D009931 1.2e-11 73.2 116 44.0
MD11G1294300 Malus domestica HOM05D007792 ORTHO05D009931 2.0e-11 72.4 42 88.1
Phvul.004G105000 Phaseolus vulgaris HOM05D007792 ORTHO05D009931 2.7e-08 62.0 72 56.9
Gohir.D01G169022 Gossypium hirsutum HOM05D007792 ORTHO05D009931 4.6e-08 61.2 92 44.6
Gorai.002G210300 Gossypium raimondii HOM05D007792 ORTHO05D009931 4.6e-08 61.2 51 64.7
Eucgr.D02558 Eucalyptus grandis HOM05D007792 ORTHO05D009931 6.0e-08 60.8 46 71.7
Duzib071G0002 Durio zibethinus HOM05D000274 ORTHO05D002552 3.0e-07 58.5 80 45.0
Duzib233G0002 Durio zibethinus HOM05D000274 ORTHO05D002552 3.0e-07 58.5 80 45.0
Duzib237G0004 Durio zibethinus HOM05D000274 ORTHO05D002552 3.0e-07 58.5 80 45.0
Duzib253G0005 Durio zibethinus HOM05D000274 ORTHO05D002552 3.0e-07 58.5 80 45.0
Nitab4.5_0007104g0100 Nicotiana tabacum HOM05D007792 ORTHO05D009931 7.3e-06 53.9 78 46.2


User provided reference genes

Program Settings