Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.GVI4HJ Arachis hypogaea HOM05D004916 ORTHO05D006147 1.3e-101 373.2 215 100.0
VMungo1383G1740 Vigna mungo HOM05D004916 ORTHO05D006147 1.1e-28 131.0 239 50.2
Lj5g0005115 Lotus japonicus HOM05D004916 ORTHO05D006147 4.3e-28 129.0 260 38.1
Glyma.03G225300 Glycine max HOM05D004916 ORTHO05D006147 4.0e-26 122.5 231 42.0
Phvul.001G219100 Phaseolus vulgaris HOM05D004916 ORTHO05D006147 3.4e-25 119.4 265 37.7
Lalb_Chr15g0077851 Lupinus albus HOM05D004916 ORTHO05D006147 2.2e-24 116.7 257 40.9
Phvul.007G208300 Phaseolus vulgaris HOM05D004916 ORTHO05D006147 1.1e-23 114.4 240 38.3
Lj1g0011620 Lotus japonicus HOM05D004916 ORTHO05D006147 4.2e-23 112.5 279 37.3
TPR.G8393 Trifolium pratense HOM05D004916 ORTHO05D006147 4.2e-23 112.5 285 36.5
Glyma.19G222300 Glycine max HOM05D004916 ORTHO05D006147 5.4e-23 112.1 229 40.2
Medtr7g110880 Medicago truncatula HOM05D004916 ORTHO05D006147 1.2e-22 110.9 286 35.0
Psat3g016360 Pisum sativum HOM05D004916 ORTHO05D006147 1.3e-21 107.5 259 43.6
Ca_09253_v3 Cicer arietinum L. HOM05D004916 ORTHO05D006147 1.1e-20 104.4 285 33.7
Lalb_Chr18g0046341 Lupinus albus HOM05D004916 ORTHO05D006147 3.3e-20 102.8 275 36.4
arahy.Tifrunner.gnm1.ann1.Y1689U Arachis hypogaea HOM05D004916 ORTHO05D006147 2.1e-19 100.1 213 38.0
Atru.chr5.842 Acer truncatum HOM05D004916 ORTHO05D006147 3.6e-19 99.4 267 37.1
Manes.01G235900 Manihot esculenta HOM05D004916 ORTHO05D006147 4.8e-19 99.0 254 33.9
Potri.002G185700 Populus trichocarpa HOM05D004916 ORTHO05D006147 4.8e-19 99.0 281 33.5
QL12p035219 Quercus lobata HOM05D004916 ORTHO05D006147 8.1e-19 98.2 291 31.3
Sabra14G0081700 Salix brachista HOM05D004916 ORTHO05D006147 8.1e-19 98.2 280 31.8
TAR553G0002 Trochodendron aralioides HOM05D004916 ORTHO05D006147 1.4e-18 97.4 269 34.6
TAR636G0286 Trochodendron aralioides HOM05D004916 ORTHO05D006147 3.1e-18 96.3 274 37.2
Potri.014G111000 Populus trichocarpa HOM05D004916 ORTHO05D006147 5.3e-18 95.5 281 32.0
DCAR_005711 Daucus carota HOM05D004916 ORTHO05D006147 6.9e-18 95.1 250 32.0
A05p00890 Brassica napus HOM05D004916 ORTHO05D006147 2.0e-17 93.6 241 32.4
BraA05t19090Z Brassica rapa HOM05D004916 ORTHO05D006147 2.6e-17 93.2 241 32.4
Sabra02G0148800 Salix brachista HOM05D004916 ORTHO05D006147 3.4e-17 92.8 245 33.1
Manes.05G007300 Manihot esculenta HOM05D004916 ORTHO05D006147 4.5e-17 92.4 252 33.3
TAR365G1046 Trochodendron aralioides HOM05D004916 ORTHO05D006147 4.5e-17 92.4 275 34.9
THA.LOC104827649 Tarenaya hassleriana HOM05D004916 ORTHO05D006147 5.8e-17 92.0 242 35.1
CARHR142290 Cardamine hirsuta HOM05D004916 ORTHO05D006147 7.6e-17 91.7 253 30.0
MBI18_g03855_MAGBIO Magnolia biondii HOM05D004916 ORTHO05D006147 1.3e-16 90.9 227 33.0
BcaB01g03195 Brassica carinata HOM05D004916 ORTHO05D006147 1.7e-16 90.5 241 30.3
C04p01040 Brassica napus HOM05D004916 ORTHO05D006147 1.7e-16 90.5 244 32.0
BolC4t21757H Brassica oleracea HOM05D004916 ORTHO05D006147 1.7e-16 90.5 244 32.0
BcaC02g12625 Brassica carinata HOM05D004916 ORTHO05D006147 2.2e-16 90.1 244 32.0
Thhalv10001588m.g Eutrema salsugineum HOM05D004916 ORTHO05D006147 2.2e-16 90.1 259 30.1
Cfa004923 Carpinus fangiana HOM05D004916 ORTHO05D006147 2.9e-16 89.7 304 29.9
BcaC02g12821 Brassica carinata HOM05D004916 ORTHO05D006147 3.8e-16 89.4 249 30.5
Duzib133G0180 Durio zibethinus HOM05D004916 ORTHO05D006147 4.9e-16 89.0 282 32.3
Aqoxy5G02859 Aquilegia oxysepala HOM05D004916 ORTHO05D006147 1.4e-15 87.4 239 32.2
PGR042G3904 Punica granatum HOM05D004916 ORTHO05D006147 1.4e-15 87.4 244 33.2
Ciclev10021551m.g Citrus clementina HOM05D004916 ORTHO05D006147 1.9e-15 87.0 282 33.3
Duzib138G0475 Durio zibethinus HOM05D004916 ORTHO05D006147 2.4e-15 86.7 281 32.0
AL4G46410 Arabidopsis lyrata HOM05D004916 ORTHO05D006147 4.2e-15 85.9 257 28.4
BcaC01g05053 Brassica carinata HOM05D004916 ORTHO05D006147 4.2e-15 85.9 259 29.0
A03p25790 Brassica napus HOM05D004916 ORTHO05D006147 4.2e-15 85.9 257 30.0
C03p30740 Brassica napus HOM05D004916 ORTHO05D006147 4.2e-15 85.9 259 29.0
BolC3t15423H Brassica oleracea HOM05D004916 ORTHO05D006147 4.2e-15 85.9 259 29.0
Carub.0005s2882 Capsella rubella HOM05D004916 ORTHO05D006147 4.2e-15 85.9 232 32.3
CiPaw.07G126700 Carya illinoinensis HOM05D004916 ORTHO05D006147 5.4e-15 85.5 310 28.4
Haze_05162 Corylus avellana HOM05D004916 ORTHO05D006147 5.4e-15 85.5 311 29.3
COL.COLO4_23106 Corchorus olitorius HOM05D004916 ORTHO05D006147 9.3e-15 84.7 300 31.3
Gorai.007G118300 Gossypium raimondii HOM05D004916 ORTHO05D006147 9.3e-15 84.7 282 32.6
Sp5g01300 Schrenkiella parvula HOM05D004916 ORTHO05D006147 9.3e-15 84.7 236 35.6
AL5G44750 Arabidopsis lyrata HOM05D004916 ORTHO05D006147 1.2e-14 84.3 229 31.0
BraA03t11793Z Brassica rapa HOM05D004916 ORTHO05D006147 1.2e-14 84.3 255 29.0
Carub.0004s2967 Capsella rubella HOM05D004916 ORTHO05D006147 1.6e-14 84.0 258 29.8
AT2G46940 Arabidopsis thaliana HOM05D004916 ORTHO05D006147 2.7e-14 83.2 246 30.1
Thecc.01G327100 Theobroma cacao HOM05D004916 ORTHO05D006147 2.7e-14 83.2 282 31.2
Gohir.A12G119000 Gossypium hirsutum HOM05D004916 ORTHO05D006147 3.5e-14 82.8 241 34.0
Gohir.D12G122800 Gossypium hirsutum HOM05D004916 ORTHO05D006147 4.6e-14 82.4 241 32.8
Gorai.001G148600 Gossypium raimondii HOM05D004916 ORTHO05D006147 4.6e-14 82.4 268 32.1
Gorai.008G133600 Gossypium raimondii HOM05D004916 ORTHO05D006147 4.6e-14 82.4 241 32.8
AT3G62070 Arabidopsis thaliana HOM05D004916 ORTHO05D006147 7.9e-14 81.6 225 32.0
CiPaw.08G082200 Carya illinoinensis HOM05D004916 ORTHO05D006147 7.9e-14 81.6 308 29.9
Prupe.3G001400 Prunus persica HOM05D004916 ORTHO05D006147 1.8e-13 80.5 296 29.1
TAR633G1842 Trochodendron aralioides HOM05D004916 ORTHO05D006147 1.8e-13 80.5 221 35.7
Thhalv10006193m.g Eutrema salsugineum HOM05D004916 ORTHO05D006147 2.3e-13 80.1 227 30.8
Gohir.A07G132300 Gossypium hirsutum HOM05D004916 ORTHO05D006147 2.3e-13 80.1 268 31.7
PSO761G0152 Papaver somniferum HOM05D004916 ORTHO05D006147 3.9e-13 79.3 272 31.6
Gohir.A11G105700 Gossypium hirsutum HOM05D004916 ORTHO05D006147 1.1e-12 77.8 257 32.7
Gohir.D11G110600 Gossypium hirsutum HOM05D004916 ORTHO05D006147 1.1e-12 77.8 257 33.1
BolC8t51280H Brassica oleracea HOM05D004916 ORTHO05D006147 2.5e-12 76.6 227 41.0
CANSAT25G0633 Cannabis sativa HOM05D004916 ORTHO05D006147 2.5e-12 76.6 296 29.7
C08p37030 Brassica napus HOM05D004916 ORTHO05D006147 3.3e-12 76.3 224 35.3
Gohir.D07G136500 Gossypium hirsutum HOM05D004916 ORTHO05D006147 5.6e-12 75.5 269 31.2
Glyma.02G006700 Glycine max HOM05D004916 ORTHO05D006147 7.4e-12 75.1 74 52.7
A09p54150 Brassica napus HOM05D004916 ORTHO05D006147 2.1e-11 73.6 227 34.4
GSVIVG01028232001 Vitis vinifera HOM05D004916 ORTHO05D006147 2.1e-11 73.6 91 47.3
BraA09t40829Z Brassica rapa HOM05D004916 ORTHO05D006147 3.6e-11 72.8 227 35.7
PSO210G3767 Papaver somniferum HOM05D004916 ORTHO05D006147 4.8e-11 72.4 306 28.4
Cpa.g.sc57.33 Carica papaya HOM05D004916 ORTHO05D006147 1.4e-10 70.9 271 31.0
DCAR_002943 Daucus carota HOM05D004916 ORTHO05D006147 1.4e-10 70.9 258 26.7
CSS0004254 Camellia sinensis var. sinensis HOM05D004916 ORTHO05D006147 3.1e-10 69.7 94 44.7
CSS0009622 Camellia sinensis var. sinensis HOM05D004916 ORTHO05D006147 3.1e-10 69.7 94 44.7
TWI14G0993 Tripterygium wilfordii HOM05D004916 ORTHO05D006147 4.0e-10 69.3 278 29.1
Eucgr.A00995 Eucalyptus grandis HOM05D004916 ORTHO05D006147 5.3e-10 68.9 302 25.5
THA.LOC104815913 Tarenaya hassleriana HOM05D004916 ORTHO05D006147 5.3e-10 68.9 253 29.6
THA.LOC104825924 Tarenaya hassleriana HOM05D004916 ORTHO05D006147 5.3e-10 68.9 87 48.3
BcaB01g03196 Brassica carinata HOM05D004916 ORTHO05D006147 6.9e-10 68.6 83 42.2
MD00G1137300 Malus domestica HOM05D004916 ORTHO05D006147 6.9e-10 68.6 96 43.8
BcaC01g06807 Brassica carinata HOM05D004916 ORTHO05D006147 9.0e-10 68.2 81 49.4
C03p38500 Brassica napus HOM05D004916 ORTHO05D006147 9.0e-10 68.2 81 49.4
BolC3t16124H Brassica oleracea HOM05D004916 ORTHO05D006147 9.0e-10 68.2 81 49.4
TAR362G0875 Trochodendron aralioides HOM05D004916 ORTHO05D006147 9.0e-10 68.2 86 43.0
Aa31LG1G28300 Aethionema arabicum HOM05D004916 ORTHO05D006147 1.5e-09 67.4 226 31.4
Thhalv10028918m.g Eutrema salsugineum HOM05D004916 ORTHO05D006147 1.5e-09 67.4 231 30.3
Gorai.004G147700 Gossypium raimondii HOM05D004916 ORTHO05D006147 1.5e-09 67.4 242 30.2
MBI18_g28911_MAGBIO Magnolia biondii HOM05D004916 ORTHO05D006147 1.5e-09 67.4 75 52.0
Nn4g25313 Nelumbo nucifera HOM05D004916 ORTHO05D006147 1.5e-09 67.4 289 34.3
RcHm_v2.0_Chr3g0485631 Rosa chinensis HOM05D004916 ORTHO05D006147 2.6e-09 66.6 95 42.1
Aa31LG10G16040 Aethionema arabicum HOM05D004916 ORTHO05D006147 3.4e-09 66.2 224 29.5
AL6G51680 Arabidopsis lyrata HOM05D004916 ORTHO05D006147 3.4e-09 66.2 73 49.3
BcaC02g12602 Brassica carinata HOM05D004916 ORTHO05D006147 3.4e-09 66.2 182 30.8
BcaC07g40699 Brassica carinata HOM05D004916 ORTHO05D006147 3.4e-09 66.2 228 33.3
A03p31520 Brassica napus HOM05D004916 ORTHO05D006147 3.4e-09 66.2 78 50.0
BraA03t12331Z Brassica rapa HOM05D004916 ORTHO05D006147 3.4e-09 66.2 78 50.0
Gohir.A08G121950 Gossypium hirsutum HOM05D004916 ORTHO05D006147 3.4e-09 66.2 203 32.0
BcaC02g09022 Brassica carinata HOM05D004916 ORTHO05D006147 4.5e-09 65.9 182 30.8
TAR362G0057 Trochodendron aralioides HOM05D004916 ORTHO05D006147 4.5e-09 65.9 227 26.9
Sp6g01560 Schrenkiella parvula HOM05D004916 ORTHO05D006147 7.6e-09 65.1 81 48.1
TWI23G0103 Tripterygium wilfordii HOM05D004916 ORTHO05D006147 7.6e-09 65.1 92 42.4
ATR0796G037 Amborella trichopoda HOM05D004916 ORTHO05D006147 9.9e-09 64.7 76 47.4
BcaC04g24078 Brassica carinata HOM05D004916 ORTHO05D006147 9.9e-09 64.7 81 46.9
BolC9t53063H Brassica oleracea HOM05D004916 ORTHO05D006147 9.9e-09 64.7 81 46.9
AT4G01670 Arabidopsis thaliana HOM05D004916 ORTHO05D006147 1.3e-08 64.3 81 46.9
FvH4_1g26130 Fragaria vesca HOM05D004916 ORTHO05D006147 1.3e-08 64.3 94 40.4
FAN19G1053 Fragaria x ananassa HOM05D004916 ORTHO05D006147 1.3e-08 64.3 94 40.4
FAN28G2008 Fragaria x ananassa HOM05D004916 ORTHO05D006147 1.3e-08 64.3 94 39.4
BcaB01g02376 Brassica carinata HOM05D004916 ORTHO05D006147 1.7e-08 63.9 81 46.9
FAN23G1874 Fragaria x ananassa HOM05D004916 ORTHO05D006147 1.7e-08 63.9 95 38.9
FAN26G2369 Fragaria x ananassa HOM05D004916 ORTHO05D006147 1.7e-08 63.9 94 39.4
CARHR250000 Cardamine hirsuta HOM05D004916 ORTHO05D006147 2.2e-08 63.5 81 46.9
C09p01290 Brassica napus HOM05D004916 ORTHO05D006147 2.9e-08 63.2 81 45.7
A09p01200 Brassica napus HOM05D004916 ORTHO05D006147 3.8e-08 62.8 81 46.9
BraA09t35790Z Brassica rapa HOM05D004916 ORTHO05D006147 3.8e-08 62.8 81 46.9
CDE11G0113 Ceratophyllum demersum HOM05D004916 ORTHO05D006147 8.4e-08 61.6 73 45.2
CARHR172410 Cardamine hirsuta HOM05D004916 ORTHO05D006147 1.4e-07 60.8 165 30.9
Carub.0006s3554 Capsella rubella HOM05D004916 ORTHO05D006147 2.4e-07 60.1 237 30.0
Aa31LG5G1380 Aethionema arabicum HOM05D004916 ORTHO05D006147 9.3e-07 58.2 74 41.9
THA.LOC109116831 Tarenaya hassleriana HOM05D004916 ORTHO05D006147 2.1e-06 57.0 102 43.1
Os01g0284900 Oryza sativa ssp. japonica HOM05D004916 ORTHO05D006147 4.6e-06 55.8 80 37.5


User provided reference genes

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