Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.GSAX37 Arachis hypogaea HOM05D000804 ORTHO05D005389 1.2e-29 132.5 64 100.0
arahy.Tifrunner.gnm1.ann1.A8SNFY Arachis hypogaea HOM05D000804 ORTHO05D005389 7.5e-29 129.8 63 98.4
arahy.Tifrunner.gnm1.ann1.00QVML Arachis hypogaea HOM05D000804 ORTHO05D005389 5.4e-27 123.6 63 95.2
Ca_23822_v3 Cicer arietinum L. HOM05D000804 ORTHO05D005389 1.3e-20 102.4 62 79.0
Ca_23827_v3 Cicer arietinum L. HOM05D000804 ORTHO05D005389 1.3e-20 102.4 62 79.0
Glyma.03G021000 Glycine max HOM05D000804 ORTHO05D005389 2.9e-20 101.3 61 80.3
VMungo0331G1063 Vigna mungo HOM05D000804 ORTHO05D005389 1.6e-18 95.5 62 77.4
Medtr8g035620 Medicago truncatula HOM05D000804 ORTHO05D005389 3.5e-18 94.4 62 72.6
Psat4g196240 Pisum sativum HOM05D000804 ORTHO05D005389 3.5e-18 94.4 63 73.0
TPR.G30883 Trifolium pratense HOM05D000804 ORTHO05D005389 5.9e-18 93.6 62 74.2
Phvul.010G085900 Phaseolus vulgaris HOM05D000804 ORTHO05D005389 1.7e-17 92.0 61 75.4
Lj3g0026096 Lotus japonicus HOM05D000804 ORTHO05D005389 2.3e-17 91.7 61 73.8
Potri.019G043800 Populus trichocarpa HOM05D000804 ORTHO05D005389 3.3e-16 87.8 59 69.5
Lalb_Chr07g0189561 Lupinus albus HOM05D000804 ORTHO05D005389 5.6e-16 87.0 61 75.4
QL04p052206 Quercus lobata HOM05D000804 ORTHO05D005389 5.6e-16 87.0 62 66.1
Sabra19G0054400 Salix brachista HOM05D000804 ORTHO05D005389 3.6e-15 84.3 59 67.8
Aqoxy3G02136 Aquilegia oxysepala HOM05D000804 ORTHO05D005389 1.0e-14 82.8 55 70.9
PSO063G5197 Papaver somniferum HOM05D000804 ORTHO05D005389 1.0e-14 82.8 59 66.1
Rhsim01G0134900 Rhododendron simsii HOM05D000804 ORTHO05D005389 1.8e-14 82.0 58 69.0
Gohir.A13G075600 Gossypium hirsutum HOM05D000804 ORTHO05D005389 2.3e-14 81.6 57 68.4
Gohir.D13G099900 Gossypium hirsutum HOM05D000804 ORTHO05D005389 2.3e-14 81.6 57 68.4
Gorai.013G111900 Gossypium raimondii HOM05D000804 ORTHO05D005389 2.3e-14 81.6 57 68.4
CDE12G0592 Ceratophyllum demersum HOM05D000804 ORTHO05D005389 3.1e-14 81.3 53 71.7
TWI32G1345 Tripterygium wilfordii HOM05D000804 ORTHO05D005389 3.1e-14 81.3 59 62.7
Hma1.2p1_0915F.1_g236280 Hydrangea macrophylla HOM05D000804 ORTHO05D005389 4.0e-14 80.9 61 63.9
Manes.09G131500 Manihot esculenta HOM05D000804 ORTHO05D005389 4.0e-14 80.9 59 66.1
Ciclev10030562m.g Citrus clementina HOM05D000804 ORTHO05D005389 5.2e-14 80.5 57 64.9
Prupe.2G098200 Prunus persica HOM05D000804 ORTHO05D005389 6.8e-14 80.1 55 70.9
MELO3C020372.2 Cucumis melo HOM05D000804 ORTHO05D005389 1.2e-13 79.3 61 60.7
GSVIVG01011337001 Vitis vinifera HOM05D000804 ORTHO05D005389 2.6e-13 78.2 53 71.7
Cpa.g.sc73.84 Carica papaya HOM05D000804 ORTHO05D005389 4.4e-13 77.4 56 66.1
Cc02_g26260 Coffea canephora HOM05D000804 ORTHO05D005389 4.4e-13 77.4 59 61.0
ECA248G3066 Erigeron canadensis HOM05D000804 ORTHO05D005389 4.4e-13 77.4 58 63.8
MD07G1077300 Malus domestica HOM05D000804 ORTHO05D005389 4.4e-13 77.4 55 67.3
Nitab4.5_0003594g0020 Nicotiana tabacum HOM05D000804 ORTHO05D005389 5.8e-13 77.0 58 60.3
RcHm_v2.0_Chr1g0337111 Rosa chinensis HOM05D000804 ORTHO05D005389 5.8e-13 77.0 60 56.7
RcHm_v2.0_Chr1g0337141 Rosa chinensis HOM05D000804 ORTHO05D005389 5.8e-13 77.0 60 56.7
FvH4_7g07130 Fragaria vesca HOM05D000804 ORTHO05D005389 7.5e-13 76.6 59 57.6
FAN06G2879 Fragaria x ananassa HOM05D000804 ORTHO05D005389 7.5e-13 76.6 59 57.6
FAN10G1244 Fragaria x ananassa HOM05D000804 ORTHO05D005389 7.5e-13 76.6 59 57.6
CSS0037336 Camellia sinensis var. sinensis HOM05D000804 ORTHO05D005389 9.8e-13 76.3 53 73.6
CANSAT56G1528 Cannabis sativa HOM05D000804 ORTHO05D005389 1.3e-12 75.9 64 60.9
Duzib128G1116 Durio zibethinus HOM05D000804 ORTHO05D005389 1.3e-12 75.9 57 66.7
Solyc01g081050.4 Solanum lycopersicum HOM05D000804 ORTHO05D005389 1.7e-12 75.5 57 61.4
CAN.G700.21 Capsicum annuum HOM05D000804 ORTHO05D005389 2.9e-12 74.7 58 60.3
Nitab4.5_0000592g0250 Nicotiana tabacum HOM05D000804 ORTHO05D005389 2.9e-12 74.7 58 62.1
vmacro21110 Vaccinium macrocarpon HOM05D000804 ORTHO05D005389 3.7e-12 74.3 59 64.4
Peaxi162Scf00592g00212 Petunia axillaris HOM05D000804 ORTHO05D005389 8.3e-12 73.2 58 60.3
Nn1g09657 Nelumbo nucifera HOM05D000804 ORTHO05D005389 1.1e-11 72.8 57 63.2
Sc17g0001320 Simmondsia chinensis HOM05D000804 ORTHO05D005389 1.1e-11 72.8 56 58.9
AUR62017553 Chenopodium quinoa HOM05D000804 ORTHO05D005389 1.4e-11 72.4 63 55.6
DCAR_029554 Daucus carota HOM05D000804 ORTHO05D005389 1.4e-11 72.4 60 53.3
Thecc.05G230500 Theobroma cacao HOM05D000804 ORTHO05D005389 1.4e-11 72.4 57 63.2
EL10Ac5g10540 Beta vulgaris HOM05D000804 ORTHO05D005389 2.0e-10 68.6 63 52.4
AUR62028598 Chenopodium quinoa HOM05D000804 ORTHO05D005389 2.0e-10 68.6 64 54.7
FAN01G0713 Fragaria x ananassa HOM05D000804 ORTHO05D005389 2.0e-10 68.6 59 52.5
Aa31LG9G17950 Aethionema arabicum HOM05D000804 ORTHO05D005389 2.7e-10 68.2 63 50.8
BraA08t32948Z Brassica rapa HOM05D000804 ORTHO05D005389 6.0e-10 67.0 62 51.6
AT5G35930 Arabidopsis thaliana HOM05D000804 ORTHO05D005389 7.8e-10 66.6 53 56.6
HanXRQChr01g0020521 Helianthus annuus HOM05D000804 ORTHO05D005389 1.0e-09 66.2 56 57.1
Migut.N01690 Erythranthe guttata HOM05D000804 ORTHO05D005389 3.9e-09 64.3 62 50.0
Ah.02g110870 Amaranthus hybridus HOM05D000804 ORTHO05D005389 1.1e-08 62.8 60 48.3
HPP92_005377 Vanilla planifolia HOM05D000804 ORTHO05D005389 1.9e-08 62.0 60 46.7
Lj7C558T5 Lonicera japonica HOM05D000804 ORTHO05D005389 2.5e-08 61.6 62 50.0
BcaB04g18018 Brassica carinata HOM05D000804 ORTHO05D005389 3.3e-08 61.2 62 48.4
BolC8t48020H Brassica oleracea HOM05D000804 ORTHO05D005389 3.3e-08 61.2 62 48.4
PGR083G1621 Punica granatum HOM05D000804 ORTHO05D005389 4.3e-08 60.8 63 44.4
SalBow4G2892 Salvia bowleyana HOM05D000804 ORTHO05D005389 4.3e-08 60.8 57 50.9
unitig_22.g5901 Utricularia gibba HOM05D000804 ORTHO05D005389 4.3e-08 60.8 52 51.9
MSTRG.4983 Avicennia marina HOM05D000804 ORTHO05D005389 1.2e-07 59.3 51 56.9
Migut.O00426 Erythranthe guttata HOM05D000804 ORTHO05D005389 1.2e-07 59.3 62 46.8
ATR0829G026 Amborella trichopoda HOM05D000804 ORTHO05D005389 2.8e-07 58.2 63 46.0
Pp3c10_8470 Physcomitrium patens HOM05D000804 ORTHO05D005389 2.8e-07 58.2 55 49.1
Cfa003676 Carpinus fangiana HOM05D000804 ORTHO05D005389 1.8e-06 55.5 38 73.7
CsaV3_2G011020 Cucumis sativus L. HOM05D000804 ORTHO05D005389 1.8e-06 55.5 61 49.2
Haze_15812 Corylus avellana HOM05D000804 ORTHO05D005389 6.8e-06 53.5 38 71.1
Sed0024810 Sechium edule HOM05D000804 ORTHO05D005389 8.9e-06 53.1 40 67.5


User provided reference genes

Program Settings