Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.GNZ56R Arachis hypogaea HOM05D003297 ORTHO05D004027 2.6e-52 208.4 102 100.0
arahy.Tifrunner.gnm1.ann1.IZLP0D Arachis hypogaea HOM05D003297 ORTHO05D004027 2.7e-36 155.2 111 72.1
arahy.Tifrunner.gnm1.ann1.5QR84K Arachis hypogaea HOM05D003297 ORTHO05D004027 3.5e-36 154.8 111 71.2
arahy.Tifrunner.gnm1.ann1.G51SBL Arachis hypogaea HOM05D003297 ORTHO05D004027 3.5e-36 154.8 111 71.2
arahy.Tifrunner.gnm1.ann1.PXFG7S Arachis hypogaea HOM05D003297 ORTHO05D004027 8.5e-35 150.2 111 70.3
Glyma.19G075600 Glycine max HOM05D003297 ORTHO05D004027 2.5e-34 148.7 111 68.5
Glyma.12G242000 Glycine max HOM05D003297 ORTHO05D004027 3.2e-34 148.3 111 68.5
Lalb_Chr06g0174311 Lupinus albus HOM05D003297 ORTHO05D004027 7.2e-34 147.1 111 66.7
TPR.G5775 Trifolium pratense HOM05D003297 ORTHO05D004027 1.2e-33 146.4 111 67.6
Medtr2g034610 Medicago truncatula HOM05D003297 ORTHO05D004027 1.6e-33 146.0 111 68.5
Psat1g161760 Pisum sativum HOM05D003297 ORTHO05D004027 2.1e-33 145.6 111 67.6
Phvul.004G055600 Phaseolus vulgaris HOM05D003297 ORTHO05D004027 1.0e-32 143.3 111 65.8
HanXRQChr17g0534591 Helianthus annuus HOM05D003297 ORTHO05D004027 1.4e-32 142.9 93 73.1
HanXRQChr17g0550191 Helianthus annuus HOM05D003297 ORTHO05D004027 1.8e-32 142.5 111 64.9
Lj4g0023257 Lotus japonicus HOM05D003297 ORTHO05D004027 1.8e-32 142.5 111 63.1
Eucgr.J02308 Eucalyptus grandis HOM05D003297 ORTHO05D004027 4.0e-32 141.4 111 64.0
Hma1.2p1_0172F.1_g076190 Hydrangea macrophylla HOM05D003297 ORTHO05D004027 4.0e-32 141.4 111 63.1
Lj1g0013881 Lotus japonicus HOM05D003297 ORTHO05D004027 4.0e-32 141.4 111 64.9
Phvul.010G007000 Phaseolus vulgaris HOM05D003297 ORTHO05D004027 5.2e-32 141.0 111 64.0
Actinidia38211 Actinidia chinensis HOM05D003297 ORTHO05D004027 6.8e-32 140.6 111 63.1
CANSAT64G0772 Cannabis sativa HOM05D003297 ORTHO05D004027 6.8e-32 140.6 111 64.0
Lj7A608T45 Lonicera japonica HOM05D003297 ORTHO05D004027 6.8e-32 140.6 111 63.1
Prupe.6G027300 Prunus persica HOM05D003297 ORTHO05D004027 8.8e-32 140.2 111 61.3
vmacro05937 Vaccinium macrocarpon HOM05D003297 ORTHO05D004027 8.8e-32 140.2 111 63.1
GSVIVG01001822001 Vitis vinifera HOM05D003297 ORTHO05D004027 1.2e-31 139.8 111 63.1
CSS0020533 Camellia sinensis var. sinensis HOM05D003297 ORTHO05D004027 1.5e-31 139.4 111 63.1
Rhsim10G0008800 Rhododendron simsii HOM05D003297 ORTHO05D004027 1.5e-31 139.4 111 62.2
RcHm_v2.0_Chr3g0477231 Rosa chinensis HOM05D003297 ORTHO05D004027 1.5e-31 139.4 111 62.2
RcHm_v2.0_Chr3g0477241 Rosa chinensis HOM05D003297 ORTHO05D004027 1.5e-31 139.4 111 62.2
Cfa007254 Carpinus fangiana HOM05D003297 ORTHO05D004027 2.0e-31 139.0 111 63.1
Ciclev10016373m.g Citrus clementina HOM05D003297 ORTHO05D004027 2.0e-31 139.0 111 62.2
Haze_14833 Corylus avellana HOM05D003297 ORTHO05D004027 2.0e-31 139.0 111 63.1
FvH4_6g20890 Fragaria vesca HOM05D003297 ORTHO05D004027 2.6e-31 138.7 111 61.3
FAN05G2878 Fragaria x ananassa HOM05D003297 ORTHO05D004027 2.6e-31 138.7 111 61.3
FAN05G2899 Fragaria x ananassa HOM05D003297 ORTHO05D004027 2.6e-31 138.7 111 61.3
FAN14G3337 Fragaria x ananassa HOM05D003297 ORTHO05D004027 2.6e-31 138.7 111 61.3
Lsat_1_v5_gn_0_14320 Lactuca sativa HOM05D003297 ORTHO05D004027 2.6e-31 138.7 93 71.0
Lsat_1_v5_gn_2_94421 Lactuca sativa HOM05D003297 ORTHO05D004027 2.6e-31 138.7 111 64.9
Manes.17G106000 Manihot esculenta HOM05D003297 ORTHO05D004027 2.6e-31 138.7 111 62.2
QL02p072446 Quercus lobata HOM05D003297 ORTHO05D004027 3.4e-31 138.3 111 62.2
Rhsim06G0126200 Rhododendron simsii HOM05D003297 ORTHO05D004027 3.4e-31 138.3 111 62.2
MD17G1015400 Malus domestica HOM05D003297 ORTHO05D004027 4.4e-31 137.9 111 62.2
PGR083G1628 Punica granatum HOM05D003297 ORTHO05D004027 5.7e-31 137.5 93 69.9
Aqoxy3G01473 Aquilegia oxysepala HOM05D003297 ORTHO05D004027 7.5e-31 137.1 111 64.0
Cpa.g.sc130.8 Carica papaya HOM05D003297 ORTHO05D004027 7.5e-31 137.1 111 61.3
Prupe.3G302500 Prunus persica HOM05D003297 ORTHO05D004027 7.5e-31 137.1 111 60.4
CSS0005089 Camellia sinensis var. sinensis HOM05D003297 ORTHO05D004027 9.8e-31 136.7 111 62.2
ECA246G0154 Erigeron canadensis HOM05D003297 ORTHO05D004027 9.8e-31 136.7 93 72.0
TWI36G1507 Tripterygium wilfordii HOM05D003297 ORTHO05D004027 9.8e-31 136.7 93 71.0
Atru.chr6.2513 Acer truncatum HOM05D003297 ORTHO05D004027 1.3e-30 136.3 111 61.3
CSS0009984 Camellia sinensis var. sinensis HOM05D003297 ORTHO05D004027 1.3e-30 136.3 111 62.2
Gohir.A05G340500 Gossypium hirsutum HOM05D003297 ORTHO05D004027 1.3e-30 136.3 111 60.4
MD09G1015300 Malus domestica HOM05D003297 ORTHO05D004027 1.3e-30 136.3 111 61.3
Peaxi162Scf00480g00212 Petunia axillaris HOM05D003297 ORTHO05D004027 1.3e-30 136.3 110 60.0
CSS0027121 Camellia sinensis var. sinensis HOM05D003297 ORTHO05D004027 1.7e-30 136.0 111 61.3
CiPaw.03G052300 Carya illinoinensis HOM05D003297 ORTHO05D004027 1.7e-30 136.0 93 69.9
Nn1g00668 Nelumbo nucifera HOM05D003297 ORTHO05D004027 1.7e-30 136.0 93 68.8
Sabra16G0215200 Salix brachista HOM05D003297 ORTHO05D004027 1.7e-30 136.0 93 68.8
Nitab4.5_0004643g0030 Nicotiana tabacum HOM05D003297 ORTHO05D004027 2.8e-30 135.2 111 60.4
Sc03g0006810 Simmondsia chinensis HOM05D003297 ORTHO05D004027 2.8e-30 135.2 111 60.4
Dinv25678 Davidia involucrata HOM05D003297 ORTHO05D004027 3.7e-30 134.8 111 62.2
Peaxi162Scf00304g00127 Petunia axillaris HOM05D003297 ORTHO05D004027 3.7e-30 134.8 111 60.4
Sed0027775 Sechium edule HOM05D003297 ORTHO05D004027 3.7e-30 134.8 111 62.2
ClCG08G000860 Citrullus lanatus HOM05D003297 ORTHO05D004027 4.8e-30 134.4 93 69.9
Cc05_g01780 Coffea canephora HOM05D003297 ORTHO05D004027 4.8e-30 134.4 111 59.5
Cc05_g01790 Coffea canephora HOM05D003297 ORTHO05D004027 4.8e-30 134.4 111 59.5
CsaV3_3G044040 Cucumis sativus L. HOM05D003297 ORTHO05D004027 4.8e-30 134.4 93 69.9
Gorai.012G088800 Gossypium raimondii HOM05D003297 ORTHO05D004027 4.8e-30 134.4 93 66.7
HanXRQChr15g0474721 Helianthus annuus HOM05D003297 ORTHO05D004027 4.8e-30 134.4 111 60.4
Nitab4.5_0003600g0020 Nicotiana tabacum HOM05D003297 ORTHO05D004027 6.3e-30 134.0 111 60.4
Lj5A712T32 Lonicera japonica HOM05D003297 ORTHO05D004027 8.3e-30 133.7 110 60.0
PSO541G1060 Papaver somniferum HOM05D003297 ORTHO05D004027 8.3e-30 133.7 110 60.0
PSO675G2052 Papaver somniferum HOM05D003297 ORTHO05D004027 8.3e-30 133.7 110 60.0
Thecc.04G030000 Theobroma cacao HOM05D003297 ORTHO05D004027 8.3e-30 133.7 93 66.7
DCAR_021763 Daucus carota HOM05D003297 ORTHO05D004027 1.1e-29 133.3 93 67.7
Nitab4.5_0000105g0150 Nicotiana tabacum HOM05D003297 ORTHO05D004027 1.1e-29 133.3 93 67.7
Aa31LG11G15030 Aethionema arabicum HOM05D003297 ORTHO05D004027 1.4e-29 132.9 110 59.1
Gohir.D04G078900 Gossypium hirsutum HOM05D003297 ORTHO05D004027 1.4e-29 132.9 93 66.7
TAR376G0821 Trochodendron aralioides HOM05D003297 ORTHO05D004027 1.4e-29 132.9 93 67.7
TAR371G0644 Trochodendron aralioides HOM05D003297 ORTHO05D004027 1.8e-29 132.5 111 59.5
CAN.G1161.37 Capsicum annuum HOM05D003297 ORTHO05D004027 2.4e-29 132.1 111 58.6
AUR62001824 Chenopodium quinoa HOM05D003297 ORTHO05D004027 2.4e-29 132.1 111 60.4
AUR62009611 Chenopodium quinoa HOM05D003297 ORTHO05D004027 2.4e-29 132.1 111 60.4
Nn3g16636 Nelumbo nucifera HOM05D003297 ORTHO05D004027 2.4e-29 132.1 110 59.1
Solyc10g078830.2 Solanum lycopersicum HOM05D003297 ORTHO05D004027 2.4e-29 132.1 111 59.5
Sopen10g029470 Solanum pennellii HOM05D003297 ORTHO05D004027 2.4e-29 132.1 111 59.5
PGSC0003DMG400011416 Solanum tuberosum HOM05D003297 ORTHO05D004027 2.4e-29 132.1 111 59.5
PSO478G3807 Papaver somniferum HOM05D003297 ORTHO05D004027 3.1e-29 131.7 110 59.1
Peaxi162Scf00003g04521 Petunia axillaris HOM05D003297 ORTHO05D004027 4.1e-29 131.3 93 65.6
HanXRQChr17g0550181 Helianthus annuus HOM05D003297 ORTHO05D004027 5.4e-29 131.0 111 60.4
Duzib264G0931 Durio zibethinus HOM05D003297 ORTHO05D004027 9.1e-29 130.2 111 58.6
PSO017G7282 Papaver somniferum HOM05D003297 ORTHO05D004027 9.1e-29 130.2 110 57.3
Hund04990 Selenicereus undatus HOM05D003297 ORTHO05D004027 9.1e-29 130.2 111 57.7
HanXRQChr15g0474981 Helianthus annuus HOM05D003297 ORTHO05D004027 1.2e-28 129.8 93 66.7
Os01g0184800 Oryza sativa ssp. japonica HOM05D003297 ORTHO05D004027 1.2e-28 129.8 106 64.2
MELO3C022190.2 Cucumis melo HOM05D003297 ORTHO05D004027 2.0e-28 129.0 102 63.7
Gohir.D09G035200 Gossypium hirsutum HOM05D003297 ORTHO05D004027 2.0e-28 129.0 111 57.7
CDE04G3082 Ceratophyllum demersum HOM05D003297 ORTHO05D004027 2.7e-28 128.6 94 67.0
BcaC04g19050 Brassica carinata HOM05D003297 ORTHO05D004027 3.5e-28 128.3 110 59.1
MSTRG.3093 Avicennia marina HOM05D003297 ORTHO05D004027 4.5e-28 127.9 92 65.2
A10p24230 Brassica napus HOM05D003297 ORTHO05D004027 4.5e-28 127.9 110 59.1
C09p62920 Brassica napus HOM05D003297 ORTHO05D004027 4.5e-28 127.9 110 59.1
BolC9t59129H Brassica oleracea HOM05D003297 ORTHO05D004027 4.5e-28 127.9 110 59.1
BraA10t44488Z Brassica rapa HOM05D003297 ORTHO05D004027 4.5e-28 127.9 110 59.1
Migut.D01746 Erythranthe guttata HOM05D003297 ORTHO05D004027 4.5e-28 127.9 110 57.3
Thhalv10014458m.g Eutrema salsugineum HOM05D003297 ORTHO05D004027 4.5e-28 127.9 110 58.2
Migut.H00013 Erythranthe guttata HOM05D003297 ORTHO05D004027 5.9e-28 127.5 110 56.4
Sp6g29790 Schrenkiella parvula HOM05D003297 ORTHO05D004027 5.9e-28 127.5 110 59.1
Carub.0006s1244 Capsella rubella HOM05D003297 ORTHO05D004027 1.0e-27 126.7 110 58.2
THA.LOC104822413 Tarenaya hassleriana HOM05D003297 ORTHO05D004027 1.0e-27 126.7 110 58.2
Gorai.006G040100 Gossypium raimondii HOM05D003297 ORTHO05D004027 1.3e-27 126.3 111 56.8
AL6G24920 Arabidopsis lyrata HOM05D003297 ORTHO05D004027 2.9e-27 125.2 110 57.3
BcaB08g36969 Brassica carinata HOM05D003297 ORTHO05D004027 2.9e-27 125.2 110 57.3
BcaB01g06337 Brassica carinata HOM05D003297 ORTHO05D004027 3.8e-27 124.8 110 56.4
Hund18929 Selenicereus undatus HOM05D003297 ORTHO05D004027 5.0e-27 124.4 111 55.9
AT5G14240 Arabidopsis thaliana HOM05D003297 ORTHO05D004027 6.5e-27 124.0 110 56.4
unitig_0.g1941 Utricularia gibba HOM05D003297 ORTHO05D004027 6.5e-27 124.0 110 54.5
Oeu058767.1 Olea europaea HOM05D003297 ORTHO05D004027 8.6e-27 123.6 110 57.3
Lsat_1_v5_gn_1_126600 Lactuca sativa HOM05D003297 ORTHO05D004027 1.5e-26 122.9 96 64.6
A03p06500 Brassica napus HOM05D003297 ORTHO05D004027 3.3e-26 121.7 110 55.5
BraA03t09982Z Brassica rapa HOM05D003297 ORTHO05D004027 3.3e-26 121.7 110 55.5
BcaB01g05299 Brassica carinata HOM05D003297 ORTHO05D004027 5.5e-26 120.9 110 55.5
C03p07500 Brassica napus HOM05D003297 ORTHO05D004027 5.5e-26 120.9 110 55.5
BolC3t13251H Brassica oleracea HOM05D003297 ORTHO05D004027 7.2e-26 120.6 110 55.5
CARHR103230 Cardamine hirsuta HOM05D003297 ORTHO05D004027 7.2e-26 120.6 110 55.5
CARHR199100 Cardamine hirsuta HOM05D003297 ORTHO05D004027 7.2e-26 120.6 110 55.5
arahy.Tifrunner.gnm1.ann1.BJ0JYY Arachis hypogaea HOM05D003297 ORTHO05D004027 9.5e-26 120.2 100 63.0
ATR1136G208 Amborella trichopoda HOM05D003297 ORTHO05D004027 1.2e-25 119.8 96 61.5
COL.COLO4_08765 Corchorus olitorius HOM05D003297 ORTHO05D004027 1.2e-25 119.8 111 51.4
arahy.Tifrunner.gnm1.ann1.6W6YW6 Arachis hypogaea HOM05D003297 ORTHO05D004027 1.6e-25 119.4 100 63.0
PSO541G1735 Papaver somniferum HOM05D003297 ORTHO05D004027 2.1e-25 119.0 110 54.5
MBI15_g24202_MAGBIO Magnolia biondii HOM05D003297 ORTHO05D004027 2.8e-25 118.6 94 61.7
Ah.16g107000 Amaranthus hybridus HOM05D003297 ORTHO05D004027 3.0e-24 115.2 145 45.5
Potri.017G066200 Populus trichocarpa HOM05D003297 ORTHO05D004027 3.0e-24 115.2 111 53.2
SMO147G0291 Selaginella moellendorffii HOM05D003297 ORTHO05D004027 3.0e-24 115.2 93 62.4
HPP92_005181 Vanilla planifolia HOM05D003297 ORTHO05D004027 4.0e-24 114.8 93 62.4
SEGI_15348 Sequoiadendron giganteum HOM05D003297 ORTHO05D004027 5.2e-24 114.4 96 58.3
Oeu050424.1 Olea europaea HOM05D003297 ORTHO05D004027 6.8e-24 114.0 94 61.7
Gohir.A09G034300 Gossypium hirsutum HOM05D003297 ORTHO05D004027 2.6e-23 112.1 102 54.9
HanXRQChr17g0534631 Helianthus annuus HOM05D003297 ORTHO05D004027 3.4e-23 111.7 66 77.3
Mapoly0059s0038 Marchantia polymorpha HOM05D003297 ORTHO05D004027 7.0e-21 104.0 93 58.1
Duzib147G0281 Durio zibethinus HOM05D003297 ORTHO05D004027 9.2e-21 103.6 66 71.2
AagrBONN_evm.TU.Sc2ySwM_368.1649 Anthoceros agrestis HOM05D003297 ORTHO05D004027 1.2e-20 103.2 93 57.0
Pp3c2_20640 Physcomitrium patens HOM05D003297 ORTHO05D004027 2.7e-20 102.1 97 51.5
RcHm_v2.0_Chr6g0252661 Rosa chinensis HOM05D003297 ORTHO05D004027 3.5e-20 101.7 62 71.0
FAN03G2227 Fragaria x ananassa HOM05D003297 ORTHO05D004027 8.6e-19 97.1 65 66.2
EL10Ac9g22681 Beta vulgaris HOM05D003297 ORTHO05D004027 1.9e-18 95.9 72 63.9
EL10Ac8g19289 Beta vulgaris HOM05D003297 ORTHO05D004027 2.5e-18 95.5 78 60.3
CAN.G1161.54 Capsicum annuum HOM05D000052 ORTHO05D000046 2.5e-18 95.5 65 64.6
CSS0031371 Camellia sinensis var. sinensis HOM05D003297 ORTHO05D004027 1.2e-17 93.2 93 52.7
Sabra17G0062400 Salix brachista HOM05D003297 ORTHO05D004027 4.7e-17 91.3 80 55.0
FAN10G0806 Fragaria x ananassa HOM05D003297 ORTHO05D004027 1.0e-16 90.1 60 66.7
SGA_v2.0_scaffold481G52325 Striga asiatica HOM05D003297 ORTHO05D004027 1.0e-16 90.1 65 64.6
SGA_v2.0_scaffold18G08223 Striga asiatica HOM05D003297 ORTHO05D004027 1.4e-16 89.7 75 60.0
arahy.Tifrunner.gnm1.ann1.D5D511 Arachis hypogaea HOM05D003297 ORTHO05D004027 1.8e-16 89.4 96 56.2
FAN01G2972 Fragaria x ananassa HOM05D003297 ORTHO05D004027 2.3e-16 89.0 80 56.2
Cre06.g291900 Chlamydomonas reinhardtii HOM05D003297 ORTHO05D004027 5.2e-16 87.8 94 43.6
Lsat_1_v5_gn_4_110841 Lactuca sativa HOM05D003297 ORTHO05D004027 1.5e-15 86.3 96 55.2
arahy.Tifrunner.gnm1.ann1.BC5FZ3 Arachis hypogaea HOM05D003297 ORTHO05D004027 2.6e-15 85.5 69 62.3
FAN06G2104 Fragaria x ananassa HOM05D003297 ORTHO05D004027 2.6e-15 85.5 60 63.3
RcHm_v2.0_Chr1g0359641 Rosa chinensis HOM05D003297 ORTHO05D004027 4.9e-14 81.3 59 64.4
CDE07G0254 Ceratophyllum demersum HOM05D003297 ORTHO05D004027 6.4e-14 80.9 58 67.2
BcaNung03173 Brassica carinata HOM05D003297 ORTHO05D004027 1.1e-13 80.1 65 58.5
HanXRQChr17g0534611 Helianthus annuus HOM05D003297 ORTHO05D004027 4.6e-12 74.7 43 76.7
BcaC03g13509 Brassica carinata HOM05D003297 ORTHO05D004027 6.0e-12 74.3 58 62.1
arahy.Tifrunner.gnm1.ann1.J9253V Arachis hypogaea HOM05D003297 ORTHO05D004027 1.0e-11 73.6 58 60.3
RcHm_v2.0_Chr2g0174741 Rosa chinensis HOM05D003297 ORTHO05D004027 5.0e-11 71.2 96 39.6
MCO09G068 Micromonas commoda HOM05D003297 ORTHO05D004027 2.1e-09 65.9 98 36.7
Potri.001G334100 Populus trichocarpa HOM05D003297 ORTHO05D004027 8.0e-09 63.9 48 62.5
arahy.Tifrunner.gnm1.ann1.2MK8LH Arachis hypogaea HOM05D003297 ORTHO05D004027 3.1e-08 62.0 70 52.9
Aqoxy6G01653 Aquilegia oxysepala HOM05D003297 ORTHO05D004027 8.9e-08 60.5 58 51.7
FAN10G1829 Fragaria x ananassa HOM05D003297 ORTHO05D004027 3.4e-07 58.5 36 66.7


User provided reference genes

Program Settings