Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.GN5EPC Arachis hypogaea HOM05D007024 ORTHO05D008865 3.3e-74 281.6 137 100.0
arahy.Tifrunner.gnm1.ann1.4131RS Arachis hypogaea HOM05D007024 ORTHO05D008865 5.8e-71 270.8 132 98.5
Phvul.001G173900 Phaseolus vulgaris HOM05D007024 ORTHO05D008865 3.1e-64 248.4 132 87.9
Glyma.19G177600 Glycine max HOM05D007024 ORTHO05D008865 1.2e-63 246.5 132 87.1
Lj1g0023744 Lotus japonicus HOM05D007024 ORTHO05D008865 3.4e-63 245.0 132 86.4
Medtr7g100540 Medicago truncatula HOM05D007024 ORTHO05D008865 3.4e-63 245.0 132 87.1
VMungo1383G1891 Vigna mungo HOM05D007024 ORTHO05D008865 4.5e-63 244.6 132 86.4
QL07p045588 Quercus lobata HOM05D007024 ORTHO05D008865 5.8e-63 244.2 131 83.2
Psat3g045960 Pisum sativum HOM05D007024 ORTHO05D008865 7.6e-63 243.8 132 86.4
Ciclev10013683m.g Citrus clementina HOM05D007024 ORTHO05D008865 2.9e-62 241.9 132 82.6
Ca_08817_v3 Cicer arietinum L. HOM05D007024 ORTHO05D008865 1.1e-61 240.0 132 84.1
Duzib106G2062 Durio zibethinus HOM05D007024 ORTHO05D008865 1.4e-61 239.6 132 83.3
Thecc.05G052000 Theobroma cacao HOM05D007024 ORTHO05D008865 2.5e-61 238.8 132 83.3
CiPaw.09G183100 Carya illinoinensis HOM05D007024 ORTHO05D008865 3.2e-61 238.4 132 84.1
COL.COLO4_10283 Corchorus olitorius HOM05D007024 ORTHO05D008865 5.5e-61 237.7 132 81.1
Cfa017486 Carpinus fangiana HOM05D007024 ORTHO05D008865 7.1e-61 237.3 132 83.3
TPR.G39424 Trifolium pratense HOM05D007024 ORTHO05D008865 9.3e-61 236.9 129 85.3
Sabra06G0104600 Salix brachista HOM05D007024 ORTHO05D008865 1.2e-60 236.5 130 80.8
Gohir.A09G160700 Gossypium hirsutum HOM05D007024 ORTHO05D008865 2.1e-60 235.7 132 81.1
Gohir.D09G156400 Gossypium hirsutum HOM05D007024 ORTHO05D008865 2.1e-60 235.7 132 81.1
Gorai.006G177900 Gossypium raimondii HOM05D007024 ORTHO05D008865 2.1e-60 235.7 132 81.1
Lalb_Chr20g0112901 Lupinus albus HOM05D007024 ORTHO05D008865 2.1e-60 235.7 132 81.8
CsaV3_4G024400 Cucumis sativus L. HOM05D007024 ORTHO05D008865 6.0e-60 234.2 132 79.5
ClCG04G008760 Citrullus lanatus HOM05D007024 ORTHO05D008865 7.9e-60 233.8 132 79.5
PGR004G2860 Punica granatum HOM05D007024 ORTHO05D008865 1.3e-59 233.0 132 80.3
Atru.chr8.2534 Acer truncatum HOM05D007024 ORTHO05D008865 2.3e-59 232.3 132 79.5
FAN02G0668 Fragaria x ananassa HOM05D007024 ORTHO05D008865 2.3e-59 232.3 130 80.0
Potri.006G133100 Populus trichocarpa HOM05D007024 ORTHO05D008865 2.3e-59 232.3 130 80.0
RcHm_v2.0_Chr3g0468261 Rosa chinensis HOM05D007024 ORTHO05D008865 2.3e-59 232.3 130 80.0
FAN14G4602 Fragaria x ananassa HOM05D007024 ORTHO05D007145 3.9e-59 231.5 130 80.0
MD12G1128400 Malus domestica HOM05D007024 ORTHO05D008865 3.9e-59 231.5 130 80.0
GSVIVG01025554001 Vitis vinifera HOM05D007024 ORTHO05D008865 3.9e-59 231.5 136 77.9
CiPaw.09G182200 Carya illinoinensis HOM05D007024 ORTHO05D008865 5.1e-59 231.1 128 84.4
FAN09G4212 Fragaria x ananassa HOM05D007024 ORTHO05D008865 5.1e-59 231.1 130 80.0
Nn2g10613 Nelumbo nucifera HOM05D007024 ORTHO05D008865 6.7e-59 230.7 132 79.5
Sed0013795 Sechium edule HOM05D007024 ORTHO05D008865 8.7e-59 230.3 132 78.8
THA.LOC104805324 Tarenaya hassleriana HOM05D007024 ORTHO05D008865 8.7e-59 230.3 132 78.0
Cpa.g.sc45.24 Carica papaya HOM05D007024 ORTHO05D008865 1.1e-58 229.9 123 84.6
Eucgr.K03198 Eucalyptus grandis HOM05D007024 ORTHO05D008865 1.1e-58 229.9 132 79.5
vmacro08688 Vaccinium macrocarpon HOM05D007024 ORTHO05D008865 1.9e-58 229.2 132 78.8
Aa31LG5G22570 Aethionema arabicum HOM05D007024 ORTHO05D008865 2.5e-58 228.8 131 77.9
Oeu029107.1 Olea europaea HOM05D007024 ORTHO05D008865 4.3e-58 228.0 130 78.5
Peaxi162Scf01517g00138 Petunia axillaris HOM05D007024 ORTHO05D008865 4.3e-58 228.0 129 79.1
Aqoxy4G03151 Aquilegia oxysepala HOM05D007024 ORTHO05D008865 7.4e-58 227.3 131 78.6
Migut.L01652 Erythranthe guttata HOM05D007024 ORTHO05D008865 9.6e-58 226.9 130 76.9
Nitab4.5_0010883g0010 Nicotiana tabacum HOM05D007024 ORTHO05D008865 9.6e-58 226.9 130 77.7
BcaB02g09297 Brassica carinata HOM05D007024 ORTHO05D008865 2.8e-57 225.3 132 75.8
A05p08660 Brassica napus HOM05D007024 ORTHO05D008865 2.8e-57 225.3 132 76.5
Dinv35695 Davidia involucrata HOM05D001458 ORTHO05D006787 2.8e-57 225.3 131 77.1
Sp4g19560 Schrenkiella parvula HOM05D007024 ORTHO05D008865 3.7e-57 224.9 132 76.5
CSS0004845 Camellia sinensis var. sinensis HOM05D007024 ORTHO05D008865 4.8e-57 224.6 132 77.3
Thhalv10017137m.g Eutrema salsugineum HOM05D007024 ORTHO05D008865 4.8e-57 224.6 132 76.5
BcaC02g11844 Brassica carinata HOM05D007024 ORTHO05D008865 6.2e-57 224.2 132 75.8
C04p10750 Brassica napus HOM05D007024 ORTHO05D008865 6.2e-57 224.2 132 75.8
BolC4t22670H Brassica oleracea HOM05D007024 ORTHO05D008865 6.2e-57 224.2 132 75.8
BraA05t19834Z Brassica rapa HOM05D007024 ORTHO05D008865 6.2e-57 224.2 132 75.8
Cc06_g03440 Coffea canephora HOM05D007024 ORTHO05D008865 1.4e-56 223.0 126 79.4
Nitab4.5_0000848g0140 Nicotiana tabacum HOM05D007024 ORTHO05D008865 1.4e-56 223.0 130 76.2
AT2G37240 Arabidopsis thaliana HOM05D007024 ORTHO05D008865 1.8e-56 222.6 132 75.0
MBI18_g34970_MAGBIO Magnolia biondii HOM05D007024 ORTHO05D008865 2.4e-56 222.2 132 74.2
Solyc09g007190.3 Solanum lycopersicum HOM05D007024 ORTHO05D008865 2.4e-56 222.2 130 76.2
Sopen09g002060 Solanum pennellii HOM05D007024 ORTHO05D008865 2.4e-56 222.2 130 76.2
HanXRQChr05g0129231 Helianthus annuus HOM05D007024 ORTHO05D008865 4.0e-56 221.5 136 74.3
AL4G33620 Arabidopsis lyrata HOM05D007024 ORTHO05D008865 5.3e-56 221.1 132 74.2
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 6.9e-56 220.7 125 79.2
Carub.0004s1915 Capsella rubella HOM05D007024 ORTHO05D008865 9.0e-56 220.3 132 74.2
CAN.G350.48 Capsicum annuum HOM05D007024 ORTHO05D008865 9.0e-56 220.3 131 74.0
CARHR132350 Cardamine hirsuta HOM05D007024 ORTHO05D008865 9.0e-56 220.3 132 74.2
PSO782G5617 Papaver somniferum HOM05D007024 ORTHO05D008865 2.0e-55 219.2 131 73.3
Lsat_1_v5_gn_2_109921 Lactuca sativa HOM05D007024 ORTHO05D008865 3.4e-55 218.4 136 73.5
ECA238G1489 Erigeron canadensis HOM05D007024 ORTHO05D008865 4.5e-55 218.0 136 71.3
Sc20g0004190 Simmondsia chinensis HOM05D007024 ORTHO05D008865 4.5e-55 218.0 127 78.0
PSO063G4670 Papaver somniferum HOM05D007024 ORTHO05D008865 1.3e-54 216.5 131 74.0
Actinidia05279 Actinidia chinensis HOM05D007024 ORTHO05D008865 2.2e-54 215.7 128 78.1
ATR0582G226 Amborella trichopoda HOM05D007024 ORTHO05D008865 3.2e-53 211.8 130 73.1
Lj3A977T52 Lonicera japonica HOM05D007024 ORTHO05D008865 4.2e-53 211.5 146 68.5
Os03g0284600 Oryza sativa ssp. japonica HOM05D007024 ORTHO05D008865 7.1e-53 210.7 136 69.1
Zm00001eb013030 Zea mays HOM05D007024 ORTHO05D008865 9.3e-53 210.3 136 69.1
HPP92_003601 Vanilla planifolia HOM05D007024 ORTHO05D008865 1.0e-51 206.8 130 70.0
COL.COLO4_27104 Corchorus olitorius HOM05D007024 ORTHO05D008865 1.3e-51 206.5 111 84.7
unitig_746.g26783 Utricularia gibba HOM05D007024 ORTHO05D008865 1.3e-51 206.5 134 71.6
Haze_20672 Corylus avellana HOM05D007024 ORTHO05D008865 1.3e-49 199.9 112 82.1
Manes.08G001700 Manihot esculenta HOM05D007024 ORTHO05D008865 1.6e-49 199.5 139 71.2
Prupe.6G244000 Prunus persica HOM05D007024 ORTHO05D008865 1.6e-49 199.5 110 79.1
SMO353G0397 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 2.0e-47 192.6 130 58.5
CDE04G0730 Ceratophyllum demersum HOM05D007024 ORTHO05D008865 2.6e-47 192.2 163 57.7
PGSC0003DMG400031729 Solanum tuberosum HOM05D007024 ORTHO05D008865 2.9e-46 188.7 108 78.7
TAR633G0628 Trochodendron aralioides HOM05D007024 ORTHO05D008865 1.1e-45 186.8 112 75.0
Hund12062 Selenicereus undatus HOM05D007024 ORTHO05D008865 2.1e-44 182.6 111 72.1
AUR62040525 Chenopodium quinoa HOM05D006367 ORTHO05D007942 3.6e-44 181.8 97 84.5
Glyma.03G176900 Glycine max HOM05D007024 ORTHO05D008865 3.6e-44 181.8 104 81.7
FvH4_6g15080 Fragaria vesca HOM05D007024 ORTHO05D008865 1.0e-38 163.7 92 80.4
Mapoly0154s0013 Marchantia polymorpha HOM05D007024 ORTHO05D008865 8.5e-38 160.6 128 57.0
TWI74G0989 Tripterygium wilfordii HOM05D007024 ORTHO05D008865 3.2e-37 158.7 92 77.2
PGSC0003DMG400027897 Solanum tuberosum HOM05D007024 ORTHO05D008865 2.3e-35 152.5 92 75.0
SGA_v2.0_scaffold94G28656 Striga asiatica HOM05D007024 ORTHO05D008865 5.3e-32 141.4 92 70.7
SMO171G0126 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 5.0e-30 134.8 130 46.9
SMO353G0028 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 5.0e-30 134.8 111 53.2
CBR_g9017 Chara braunii HOM05D001161 ORTHO05D000497 1.0e-27 127.1 108 51.9
AagrBONN_evm.TU.Sc2ySwM_344.3825 Anthoceros agrestis HOM05D007024 ORTHO05D008865 3.9e-27 125.2 88 62.5
CANSAT80G1842 Cannabis sativa HOM05D007024 ORTHO05D008865 9.4e-21 104.0 79 58.2
Manes.09G070900 Manihot esculenta HOM05D007024 ORTHO05D008865 2.7e-20 102.4 61 75.4
MELO3C003072.2 Cucumis melo HOM05D007024 ORTHO05D008865 6.1e-20 101.3 61 75.4
Hma1.2p1_0111F.1_g053690 Hydrangea macrophylla HOM05D007024 ORTHO05D008865 1.4e-19 100.1 53 81.1
EL10Ac7g17323 Beta vulgaris HOM05D007024 ORTHO05D008865 2.3e-11 72.8 40 77.5
Pp3c27_7100 Physcomitrium patens HOM05D004917 ORTHO05D005954 5.7e-10 68.2 129 31.8
Eucgr.H02332 Eucalyptus grandis HOM05D004917 ORTHO05D005954 2.8e-09 65.9 126 31.0
SEGI_14750 Sequoiadendron giganteum HOM05D004917 ORTHO05D005954 1.4e-08 63.5 133 33.8
Psat4g080360 Pisum sativum HOM05D004917 ORTHO05D005954 4.1e-08 62.0 126 28.6
Eucgr.H02333 Eucalyptus grandis HOM05D004917 ORTHO05D005954 9.1e-08 60.8 126 28.6
ECA232G4556 Erigeron canadensis HOM05D004917 ORTHO05D005954 4.5e-07 58.5 128 30.5
Os03g0729300 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 1.3e-06 57.0 127 30.7
RcHm_v2.0_Chr4g0422601 Rosa chinensis HOM05D007024 ORTHO05D008865 8.6e-06 54.3 29 72.4


User provided reference genes

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