Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.GL96XS Arachis hypogaea HOM05D005470 ORTHO05D006855 4.7e-39 164.1 84 100.0
arahy.Tifrunner.gnm1.ann1.K5YBAW Arachis hypogaea HOM05D005470 ORTHO05D006855 2.1e-31 138.7 73 95.9
arahy.Tifrunner.gnm1.ann1.HRPB72 Arachis hypogaea HOM05D005470 ORTHO05D006855 2.3e-30 135.2 73 93.2
arahy.Tifrunner.gnm1.ann1.07T9WF Arachis hypogaea HOM05D005470 ORTHO05D006855 8.3e-28 126.7 89 74.2
arahy.Tifrunner.gnm1.ann1.KE0QUS Arachis hypogaea HOM05D005470 ORTHO05D006855 4.1e-27 124.4 89 74.2
Phvul.007G209400 Phaseolus vulgaris HOM05D005470 ORTHO05D006855 1.2e-26 122.9 89 69.7
arahy.Tifrunner.gnm1.ann1.4GE7F8 Arachis hypogaea HOM05D005470 ORTHO05D006855 2.0e-26 122.1 89 74.2
VMungo0516G0001 Vigna mungo HOM05D005470 ORTHO05D006855 2.3e-25 118.6 89 67.4
Glyma.18G172500 Glycine max HOM05D005470 ORTHO05D006855 8.6e-25 116.7 89 66.3
Psat3g144240 Pisum sativum HOM05D005470 ORTHO05D006855 1.5e-24 115.9 89 66.3
Ca_07533_v3 Cicer arietinum L. HOM05D005470 ORTHO05D006855 1.9e-24 115.5 84 71.4
TPR.G15281 Trifolium pratense HOM05D005470 ORTHO05D006855 2.5e-24 115.2 84 71.4
Lalb_Chr19g0125551 Lupinus albus HOM05D005470 ORTHO05D006855 3.3e-24 114.8 89 65.2
Medtr7g058920 Medicago truncatula HOM05D005470 ORTHO05D006855 5.6e-24 114.0 89 66.3
Lj1g0018515 Lotus japonicus HOM05D005470 ORTHO05D006855 3.6e-23 111.3 89 64.0
arahy.Tifrunner.gnm1.ann1.M1HUIQ Arachis hypogaea HOM05D005470 ORTHO05D006855 2.6e-21 105.1 79 74.7
Actinidia37584 Actinidia chinensis HOM05D005470 ORTHO05D006855 8.3e-20 100.1 89 56.2
Glyma.08G355700 Glycine max HOM05D005470 ORTHO05D006855 1.4e-19 99.4 93 59.1
Manes.12G042650 Manihot esculenta HOM05D005470 ORTHO05D006855 1.4e-19 99.4 89 57.3
Haze_24781 Corylus avellana HOM05D005470 ORTHO05D006855 2.4e-19 98.6 88 56.8
CiPaw.04G106400 Carya illinoinensis HOM05D005470 ORTHO05D006855 3.2e-19 98.2 89 55.1
MD10G1166100 Malus domestica HOM05D005470 ORTHO05D006855 1.2e-18 96.3 89 52.8
Sed0016487 Sechium edule HOM05D005470 ORTHO05D006855 1.2e-18 96.3 89 58.4
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 2.1e-18 95.5 89 57.3
Hma1.2p1_1061F.1_g253380 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 2.7e-18 95.1 89 56.2
CsaV3_6G036910 Cucumis sativus L. HOM05D005470 ORTHO05D006855 4.6e-18 94.4 89 57.3
GSVIVG01028578001 Vitis vinifera HOM05D005470 ORTHO05D006855 4.6e-18 94.4 89 56.2
Atru.chr5.1498 Acer truncatum HOM05D005470 ORTHO05D006855 7.8e-18 93.6 89 52.8
ClCG07G001860 Citrullus lanatus HOM05D005470 ORTHO05D006855 7.8e-18 93.6 89 55.1
Dinv04663 Davidia involucrata HOM05D005470 ORTHO05D006855 7.8e-18 93.6 89 55.1
Gohir.A07G156000 Gossypium hirsutum HOM05D005470 ORTHO05D006855 7.8e-18 93.6 91 53.8
Gohir.D07G162300 Gossypium hirsutum HOM05D005470 ORTHO05D006855 7.8e-18 93.6 91 53.8
Gorai.001G185900 Gossypium raimondii HOM05D005470 ORTHO05D006855 7.8e-18 93.6 91 53.8
Duzib211G0062 Durio zibethinus HOM05D005470 ORTHO05D006855 1.3e-17 92.8 89 56.2
Potri.002G240800 Populus trichocarpa HOM05D005470 ORTHO05D006855 1.3e-17 92.8 89 51.7
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 1.3e-17 92.8 89 52.8
Sabra02G0183400 Salix brachista HOM05D005470 ORTHO05D006855 1.3e-17 92.8 89 51.7
Thecc.01G227800 Theobroma cacao HOM05D005470 ORTHO05D006855 1.3e-17 92.8 89 55.1
AUR62008875 Chenopodium quinoa HOM05D005470 ORTHO05D006855 1.7e-17 92.4 88 52.3
Nn3g19926 Nelumbo nucifera HOM05D005470 ORTHO05D006855 2.3e-17 92.0 89 55.1
QL03p049466 Quercus lobata HOM05D005470 ORTHO05D006855 2.3e-17 92.0 88 54.5
vmacro02749 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 2.3e-17 92.0 88 54.5
Oeu015466.1 Olea europaea HOM05D005470 ORTHO05D006855 3.9e-17 91.3 89 52.8
Prupe.8G204600 Prunus persica HOM05D005470 ORTHO05D006855 3.9e-17 91.3 84 57.1
CsaV3_3G028840 Cucumis sativus L. HOM05D005470 ORTHO05D006855 6.6e-17 90.5 89 53.9
Peaxi162Scf00107g01116 Petunia axillaris HOM05D005470 ORTHO05D006855 6.6e-17 90.5 88 53.4
RcHm_v2.0_Chr6g0285101 Rosa chinensis HOM05D005470 ORTHO05D006855 6.6e-17 90.5 89 49.4
AUR62031834 Chenopodium quinoa HOM05D005470 ORTHO05D006855 8.6e-17 90.1 88 52.3
PSO017G3643 Papaver somniferum HOM05D005470 ORTHO05D006855 8.6e-17 90.1 88 53.4
PSO478G2025 Papaver somniferum HOM05D005470 ORTHO05D006855 8.6e-17 90.1 88 53.4
THA.LOC104802678 Tarenaya hassleriana HOM05D005470 ORTHO05D006855 8.6e-17 90.1 89 52.8
TAR365G1033 Trochodendron aralioides HOM05D005470 ORTHO05D006855 1.1e-16 89.7 89 52.8
CANSAT56G1556 Cannabis sativa HOM05D005470 ORTHO05D006855 1.5e-16 89.4 84 54.8
MELO3C026704.2 Cucumis melo HOM05D005470 ORTHO05D006855 1.5e-16 89.4 89 53.9
Eucgr.H00804 Eucalyptus grandis HOM05D005470 ORTHO05D006855 1.5e-16 89.4 89 49.4
DCAR_018553 Daucus carota HOM05D005470 ORTHO05D006855 1.9e-16 89.0 91 51.6
Lj2A1133T34 Lonicera japonica HOM05D005470 ORTHO05D006855 1.9e-16 89.0 89 52.8
Sc17g0002580 Simmondsia chinensis HOM05D005470 ORTHO05D006855 2.5e-16 88.6 88 52.3
EL10Ac7g17787 Beta vulgaris HOM05D005470 ORTHO05D006855 3.3e-16 88.2 88 50.0
CANSAT01G1736 Cannabis sativa HOM05D005470 ORTHO05D006855 3.3e-16 88.2 91 48.4
Aa31sc866G40 Aethionema arabicum HOM05D005470 ORTHO05D006855 4.3e-16 87.8 89 49.4
Ah.08g214020 Amaranthus hybridus HOM05D005470 ORTHO05D006855 4.3e-16 87.8 87 51.7
Cc01_g17220 Coffea canephora HOM05D005470 ORTHO05D006855 4.3e-16 87.8 89 51.7
FvH4_2g19300 Fragaria vesca HOM05D005470 ORTHO05D006855 4.3e-16 87.8 89 48.3
FAN24G1307 Fragaria x ananassa HOM05D005470 ORTHO05D006855 4.3e-16 87.8 89 48.3
TWI75G1873 Tripterygium wilfordii HOM05D005470 ORTHO05D006855 4.3e-16 87.8 89 51.7
Nitab4.5_0000866g0080 Nicotiana tabacum HOM05D005470 ORTHO05D006855 5.6e-16 87.4 89 51.7
Ciclev10021316m.g Citrus clementina HOM05D005470 ORTHO05D006855 7.3e-16 87.0 84 54.8
Nitab4.5_0000866g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 9.5e-16 86.7 89 51.7
PGR083G1301 Punica granatum HOM05D005470 ORTHO05D006855 9.5e-16 86.7 89 52.8
Hund18358 Selenicereus undatus HOM05D005470 ORTHO05D006855 1.2e-15 86.3 88 52.3
Migut.D00523 Erythranthe guttata HOM05D005470 ORTHO05D006855 1.6e-15 85.9 89 48.3
ATR0736G181 Amborella trichopoda HOM05D005470 ORTHO05D006855 2.1e-15 85.5 89 49.4
Aqoxy2G03764 Aquilegia oxysepala HOM05D005470 ORTHO05D006855 2.1e-15 85.5 89 50.6
Cpa.g.sc8.172 Carica papaya HOM05D005470 ORTHO05D006855 2.1e-15 85.5 89 49.4
Migut.I00044 Erythranthe guttata HOM05D005470 ORTHO05D006855 2.1e-15 85.5 89 48.3
HanXRQChr04g0110691 Helianthus annuus HOM05D005470 ORTHO05D006855 2.1e-15 85.5 89 49.4
Os03g0851800 Oryza sativa ssp. japonica HOM05D005470 ORTHO05D006855 2.1e-15 85.5 89 48.3
Nitab4.5_0003790g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 2.8e-15 85.1 89 50.6
MSTRG.21429 Avicennia marina HOM05D005470 ORTHO05D006855 3.6e-15 84.7 90 48.9
CAN.G1273.33 Capsicum annuum HOM05D005470 ORTHO05D006855 4.7e-15 84.3 89 49.4
SHI28627 Sapria himalayana HOM05D005470 ORTHO05D006855 4.7e-15 84.3 87 52.9
SGA_v2.0_scaffold8G04652 Striga asiatica HOM05D005470 ORTHO05D006855 4.7e-15 84.3 89 49.4
Sopen09g024670 Solanum pennellii HOM05D005470 ORTHO05D006855 8.1e-15 83.6 89 48.3
CSS0013378 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 1.1e-14 83.2 89 50.6
CDE01G0096 Ceratophyllum demersum HOM05D005470 ORTHO05D006855 1.1e-14 83.2 89 47.2
PGSC0003DMG400002375 Solanum tuberosum HOM05D005470 ORTHO05D006855 1.1e-14 83.2 89 48.3
vmacro15781 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 1.1e-14 83.2 83 51.8
Sp2g19240 Schrenkiella parvula HOM05D005470 ORTHO05D006855 1.4e-14 82.8 88 47.7
ECA236G4489 Erigeron canadensis HOM05D005470 ORTHO05D006855 2.4e-14 82.0 89 47.2
Solyc09g061680.3 Solanum lycopersicum HOM05D005470 ORTHO05D006855 2.4e-14 82.0 89 48.3
BcaC06g30753 Brassica carinata HOM05D005470 ORTHO05D006855 3.1e-14 81.6 88 47.7
BolC7t44465H Brassica oleracea HOM05D005470 ORTHO05D006855 3.1e-14 81.6 88 47.7
Zm00001eb064670 Zea mays HOM05D005470 ORTHO05D006855 6.8e-14 80.5 89 47.2
BraA06t26801Z Brassica rapa HOM05D005470 ORTHO05D006855 8.9e-14 80.1 88 47.7
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 1.2e-13 79.7 83 50.6
HPP92_021568 Vanilla planifolia HOM05D005470 ORTHO05D006855 1.5e-13 79.3 91 48.4
C07p39460 Brassica napus HOM05D005470 ORTHO05D006855 2.0e-13 79.0 88 45.5
Thhalv10004618m.g Eutrema salsugineum HOM05D005470 ORTHO05D006855 2.0e-13 79.0 88 46.6
AT5G48840 Arabidopsis thaliana HOM05D005470 ORTHO05D006855 2.6e-13 78.6 88 43.2
BcaC06g30729 Brassica carinata HOM05D005470 ORTHO05D006855 2.6e-13 78.6 83 51.8
AL8G22020 Arabidopsis lyrata HOM05D005470 ORTHO05D006855 4.4e-13 77.8 88 43.2
vmacro15783 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 4.4e-13 77.8 85 50.6
CARHR182880 Cardamine hirsuta HOM05D005470 ORTHO05D006855 2.9e-12 75.1 88 46.6
Carub.0008s0857 Capsella rubella HOM05D005470 ORTHO05D006855 6.4e-12 73.9 88 43.2
unitig_92.g28105 Utricularia gibba HOM05D005470 ORTHO05D006855 1.1e-11 73.2 90 42.2
Lsat_1_v5_gn_8_90101 Lactuca sativa HOM05D005470 ORTHO05D006855 1.4e-11 72.8 89 44.9
Pp3c24_12730 Physcomitrium patens HOM05D005470 ORTHO05D006855 1.9e-11 72.4 88 43.2
Mapoly0006s0023 Marchantia polymorpha HOM05D005470 ORTHO05D006855 2.1e-10 68.9 91 44.0
SEGI_32261 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 4.6e-10 67.8 88 43.2
Atru.chr5.2015 Acer truncatum HOM05D005470 ORTHO05D006855 6.6e-09 63.9 83 43.4
Cfa002558 Carpinus fangiana HOM05D005470 ORTHO05D006855 1.5e-08 62.8 78 42.3
MELO3C014350.2 Cucumis melo HOM05D005470 ORTHO05D006855 3.3e-08 61.6 60 56.7
SMO144G0038 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 4.3e-08 61.2 88 38.6
SMO351G0371 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 5.6e-08 60.8 91 36.3
Hma1.2p1_1061F.1_g253390 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 9.0e-06 53.5 47 63.8


User provided reference genes

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