Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.GL3N7R Arachis hypogaea HOM05D007406 ORTHO05D009434 4.2e-119 431.4 221 100.0
arahy.Tifrunner.gnm1.ann1.V0H9ZK Arachis hypogaea HOM05D007406 ORTHO05D009434 7.6e-113 410.6 221 95.9
VMungo0647G2305 Vigna mungo HOM05D007406 ORTHO05D009434 1.3e-93 346.7 221 77.4
Lalb_Chr14g0368031 Lupinus albus HOM05D007406 ORTHO05D009434 5.3e-90 334.7 221 75.1
Glyma.14G090300 Glycine max HOM05D007406 ORTHO05D009434 6.9e-90 334.3 221 74.2
Ca_06987_v3 Cicer arietinum L. HOM05D007406 ORTHO05D009434 2.0e-89 332.8 221 75.6
Phvul.001G031500 Phaseolus vulgaris HOM05D007406 ORTHO05D009434 2.0e-89 332.8 226 75.2
TPR.G13149 Trifolium pratense HOM05D007406 ORTHO05D009434 2.0e-89 332.8 219 75.8
Lj5g0009058 Lotus japonicus HOM05D007406 ORTHO05D009434 2.2e-88 329.3 221 75.1
Medtr1g017290 Medicago truncatula HOM05D007406 ORTHO05D009434 1.0e-85 320.5 222 72.5
FAN24G2334 Fragaria x ananassa HOM05D007406 ORTHO05D009434 2.2e-83 312.8 223 74.9
FvH4_2g32510 Fragaria vesca HOM05D007406 ORTHO05D009434 1.4e-82 310.1 223 74.4
MD15G1064200 Malus domestica HOM05D007406 ORTHO05D009434 5.3e-82 308.1 219 71.7
FAN27G1006 Fragaria x ananassa HOM05D007406 ORTHO05D009434 6.9e-82 307.8 222 73.0
RcHm_v2.0_Chr6g0310141 Rosa chinensis HOM05D007406 ORTHO05D009434 1.5e-81 306.6 223 74.4
CiPaw.08G053000 Carya illinoinensis HOM05D007406 ORTHO05D009434 7.7e-81 304.3 221 70.6
Prupe.1G418200 Prunus persica HOM05D007406 ORTHO05D009434 1.3e-80 303.5 223 71.3
Thecc.08G083300 Theobroma cacao HOM05D007406 ORTHO05D009434 5.0e-80 301.6 222 70.3
TAR628G0119 Trochodendron aralioides HOM05D007406 ORTHO05D009434 8.5e-80 300.8 221 70.1
TWI36G1291 Tripterygium wilfordii HOM05D007406 ORTHO05D009434 3.2e-79 298.9 222 69.4
Gohir.A02G079900 Gossypium hirsutum HOM05D007406 ORTHO05D009434 1.6e-78 296.6 222 70.7
Duzib041G0608 Durio zibethinus HOM05D007406 ORTHO05D009434 2.1e-78 296.2 222 70.3
Manes.18G050400 Manihot esculenta HOM05D007406 ORTHO05D009434 7.9e-78 294.3 222 69.8
Prupe.6G207800 Prunus persica HOM05D007406 ORTHO05D009434 1.8e-77 293.1 210 71.4
Gohir.D02G087800 Gossypium hirsutum HOM05D007406 ORTHO05D009434 2.3e-77 292.7 222 70.3
Gorai.005G098400 Gossypium raimondii HOM05D007406 ORTHO05D009434 2.3e-77 292.7 222 70.3
Ciclev10002365m.g Citrus clementina HOM05D007406 ORTHO05D009434 3.9e-77 292.0 222 68.9
Cpa.g.sc160.29 Carica papaya HOM05D007406 ORTHO05D009434 8.8e-77 290.8 222 68.9
HanXRQChr08g0226371 Helianthus annuus HOM05D007406 ORTHO05D009434 1.5e-76 290.0 221 67.9
CAN.G416.4 Capsicum annuum HOM05D007406 ORTHO05D009434 2.0e-76 289.7 218 68.3
CANSAT25G0188 Cannabis sativa HOM05D007406 ORTHO05D009434 5.7e-76 288.1 221 66.5
Sopen04g031040 Solanum pennellii HOM05D007406 ORTHO05D009434 5.7e-76 288.1 218 68.3
vmacro21408 Vaccinium macrocarpon HOM05D007406 ORTHO05D009434 7.4e-76 287.7 245 62.9
Cfa013727 Carpinus fangiana HOM05D007406 ORTHO05D009434 2.2e-75 286.2 221 68.8
DCAR_020070 Daucus carota HOM05D007406 ORTHO05D009434 2.8e-75 285.8 222 65.3
Solyc04g077450.3 Solanum lycopersicum HOM05D007406 ORTHO05D009434 2.8e-75 285.8 218 67.9
Potri.002G114400 Populus trichocarpa HOM05D007406 ORTHO05D009434 3.7e-75 285.4 223 67.7
Actinidia10229 Actinidia chinensis HOM05D007406 ORTHO05D009434 6.3e-75 284.6 205 70.7
Hma1.2p1_1926F.1_g307730 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 1.4e-74 283.5 220 68.2
Sed0009876 Sechium edule HOM05D007406 ORTHO05D009434 1.4e-74 283.5 222 68.9
ClCG05G017610 Citrullus lanatus HOM05D007406 ORTHO05D009434 2.4e-74 282.7 220 67.7
Nn6g34540 Nelumbo nucifera HOM05D007406 ORTHO05D009434 5.3e-74 281.6 222 64.9
Atru.chr13.879 Acer truncatum HOM05D007406 ORTHO05D009434 1.2e-73 280.4 222 68.0
MELO3C016844.2 Cucumis melo HOM05D007406 ORTHO05D009434 4.5e-73 278.5 222 66.2
Migut.N02801 Erythranthe guttata HOM05D007406 ORTHO05D009434 5.9e-73 278.1 219 65.8
Cc10_g07740 Coffea canephora HOM05D007406 ORTHO05D009434 2.2e-72 276.2 221 64.3
THA.LOC104799833 Tarenaya hassleriana HOM05D007406 ORTHO05D009434 2.2e-72 276.2 191 71.2
Carub.0003s1158 Capsella rubella HOM05D007406 ORTHO05D009434 3.8e-72 275.4 221 64.7
Thhalv10021516m.g Eutrema salsugineum HOM05D007406 ORTHO05D009434 3.8e-72 275.4 221 64.7
PGR031G1333 Punica granatum HOM05D007406 ORTHO05D009434 6.5e-72 274.6 231 63.6
PSO017G2718 Papaver somniferum HOM05D007406 ORTHO05D009434 8.5e-72 274.2 217 64.1
AL3G23880 Arabidopsis lyrata HOM05D007406 ORTHO05D009434 1.1e-71 273.9 221 64.7
AT3G12210 Arabidopsis thaliana HOM05D007406 ORTHO05D009434 1.1e-71 273.9 221 64.7
Haze_22374 Corylus avellana HOM05D007406 ORTHO05D009434 1.4e-71 273.5 249 61.0
Sp3g10440 Schrenkiella parvula HOM05D007406 ORTHO05D009434 1.4e-71 273.5 221 64.3
BolC5t34221H Brassica oleracea HOM05D007406 ORTHO05D009434 1.9e-71 273.1 217 63.6
BraA05t22509Z Brassica rapa HOM05D007406 ORTHO05D009434 1.9e-71 273.1 217 64.1
Eucgr.F02216 Eucalyptus grandis HOM05D007406 ORTHO05D009434 7.2e-71 271.2 222 66.2
Lsat_1_v5_gn_1_721 Lactuca sativa HOM05D007406 ORTHO05D009434 9.4e-71 270.8 207 68.6
Aqoxy6G02928 Aquilegia oxysepala HOM05D007406 ORTHO05D009434 2.1e-70 269.6 220 62.7
ECA247G1434 Erigeron canadensis HOM05D007406 ORTHO05D009434 3.0e-69 265.8 217 62.7
AUR62034986 Chenopodium quinoa HOM05D007406 ORTHO05D009434 5.2e-69 265.0 220 64.5
ATR0739G008 Amborella trichopoda HOM05D007406 ORTHO05D009434 5.7e-68 261.5 220 60.5
Aa31LG11G6470 Aethionema arabicum HOM05D007406 ORTHO05D009434 2.8e-67 259.2 216 62.5
MSTRG.22203 Avicennia marina HOM05D007406 ORTHO05D009434 4.8e-67 258.5 220 61.8
SalBow2G1084 Salvia bowleyana HOM05D007406 ORTHO05D009434 1.1e-66 257.3 221 61.1
Hund05268 Selenicereus undatus HOM05D007406 ORTHO05D009434 1.4e-66 256.9 219 63.5
EL10Ac1g02342 Beta vulgaris HOM05D007406 ORTHO05D009434 1.6e-65 253.4 220 62.3
Rhsim06G0065300 Rhododendron simsii HOM05D007406 ORTHO05D009434 2.0e-65 253.1 171 72.5
Nitab4.5_0007871g0020 Nicotiana tabacum HOM05D007406 ORTHO05D009434 2.6e-65 252.7 218 62.4
Zm00001eb215640 Zea mays HOM05D007406 ORTHO05D009434 5.9e-65 251.5 221 61.5
Ah.05g166920 Amaranthus hybridus HOM05D007406 ORTHO05D009434 1.0e-64 250.8 220 60.5
SGA_v2.0_scaffold28G11843 Striga asiatica HOM05D007406 ORTHO05D009434 2.9e-64 249.2 221 62.9
MBI16_g35726_MAGBIO Magnolia biondii HOM05D007406 ORTHO05D009434 3.8e-64 248.8 234 57.7
BcaC05g29272 Brassica carinata HOM05D007406 ORTHO05D009434 1.9e-63 246.5 171 69.6
CSS0019783 Camellia sinensis var. sinensis HOM05D007406 ORTHO05D009434 1.9e-63 246.5 171 71.9
PSO170G2494 Papaver somniferum HOM05D007406 ORTHO05D009434 4.2e-63 245.4 187 65.8
COL.COLO4_28451 Corchorus olitorius HOM05D007406 ORTHO05D009434 3.6e-62 242.3 197 64.0
Sabra02G0090500 Salix brachista HOM05D000717 ORTHO05D000555 4.0e-61 238.8 171 70.2
CsaV3_4G035340 Cucumis sativus L. HOM05D007406 ORTHO05D009434 1.5e-60 236.9 171 68.4
Lj4C76T9 Lonicera japonica HOM05D007406 ORTHO05D009434 4.8e-59 231.9 159 73.0
Oeu053653.1 Olea europaea HOM05D007406 ORTHO05D009434 1.8e-58 229.9 174 65.5
SEGI_23576 Sequoiadendron giganteum HOM05D007406 ORTHO05D009434 5.9e-57 224.9 229 54.6
Peaxi162Scf01161g00328 Petunia axillaris HOM05D007406 ORTHO05D009434 2.2e-56 223.0 218 56.9
GSVIVG01009288001 Vitis vinifera HOM05D007406 ORTHO05D009434 3.2e-55 219.2 155 72.3
Pp3c10_2700 Physcomitrium patens HOM05D007406 ORTHO05D009434 6.8e-53 211.5 196 56.6
CARHR086780 Cardamine hirsuta HOM05D007406 ORTHO05D009434 9.8e-52 207.6 142 71.1
AUR62039350 Chenopodium quinoa HOM05D007406 ORTHO05D009434 4.7e-46 188.7 155 65.2
CDE04G3630 Ceratophyllum demersum HOM05D007406 ORTHO05D009434 5.2e-45 185.3 144 61.8
Nitab4.5_0001494g0090 Nicotiana tabacum HOM05D007406 ORTHO05D009434 8.3e-43 177.9 218 50.5
Sc15g0005330 Simmondsia chinensis HOM05D007406 ORTHO05D009434 5.9e-41 171.8 140 62.1
A05p37120 Brassica napus HOM05D007406 ORTHO05D004372 1.0e-40 171.0 142 63.4
C05p55550 Brassica napus HOM05D007406 ORTHO05D004372 1.3e-40 170.6 142 62.7
Aa31sc118G30 Aethionema arabicum HOM05D007406 ORTHO05D009434 1.4e-26 124.0 95 65.3
Hma1.2p1_1926F.1_g307740 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 1.0e-24 117.9 76 78.9
Hma1.2p1_2378F.1_g320925 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 1.0e-24 117.9 76 78.9
Dinv39200 Davidia involucrata HOM05D007406 ORTHO05D009434 1.2e-20 104.4 62 83.9
MCO14G094 Micromonas commoda HOM05D007406 ORTHO05D009434 4.9e-19 99.0 192 35.9
Psat0s3650g0120 Pisum sativum HOM05D007406 ORTHO05D009434 1.2e-17 94.4 59 71.2
Sc15g0005340 Simmondsia chinensis HOM05D007406 ORTHO05D009434 4.7e-14 82.4 77 59.7
Os03g0728600 Oryza sativa ssp. japonica HOM05D007406 ORTHO05D009434 1.4e-13 80.9 77 48.1
PRCOL_00000641 Prasinoderma coloniale HOM05D007406 ORTHO05D009434 3.8e-11 72.8 194 32.0
Cre10.g466400 Chlamydomonas reinhardtii HOM05D007406 ORTHO05D009434 1.4e-10 70.9 153 35.3
CDE04G2918 Ceratophyllum demersum HOM05D007406 ORTHO05D009434 8.1e-06 55.1 43 55.8


User provided reference genes

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