Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.GJQ7VP Arachis hypogaea HOM05D002505 ORTHO05D006559 0.0e+00 1127.5 611 100.0
arahy.Tifrunner.gnm1.ann1.C6HHUS Arachis hypogaea HOM05D002505 ORTHO05D006559 2.5e-259 898.7 506 97.6
arahy.Tifrunner.gnm1.ann1.91B0ED Arachis hypogaea HOM05D002505 ORTHO05D006559 4.2e-238 828.2 508 92.5
Glyma.09G030100 Glycine max HOM05D002505 ORTHO05D006559 3.1e-140 503.1 522 62.3
Lj6g0017559 Lotus japonicus HOM05D002505 ORTHO05D006559 1.0e-138 498.0 539 59.6
Phvul.006G073200 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 2.1e-136 490.3 539 60.5
Ca_18602_v3 Cicer arietinum L. HOM05D002505 ORTHO05D006559 3.6e-128 463.0 528 58.1
Phvul.006G122700 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 1.4e-127 461.1 573 56.2
VMungo0540G1128 Vigna mungo HOM05D002505 ORTHO05D006559 3.9e-127 459.5 591 53.8
Lalb_Chr20g0120281 Lupinus albus HOM05D002505 ORTHO05D006559 1.4e-119 434.5 505 56.8
VMungo1309G1878 Vigna mungo HOM05D002505 ORTHO05D006559 1.8e-116 424.1 535 55.7
TAR626G1844 Trochodendron aralioides HOM05D002505 ORTHO05D006559 7.2e-105 385.6 520 52.9
Psat4g091000 Pisum sativum HOM05D002505 ORTHO05D006559 2.4e-100 370.5 500 55.6
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 3.1e-100 370.2 514 49.2
ClCG07G010710 Citrullus lanatus HOM05D002505 ORTHO05D006559 5.4e-100 369.4 505 51.5
CiPaw.15G113000 Carya illinoinensis HOM05D002505 ORTHO05D006559 2.0e-99 367.5 431 52.7
Medtr8g078230 Medicago truncatula HOM05D002505 ORTHO05D006559 5.9e-99 365.9 535 52.5
Sc18g0006950 Simmondsia chinensis HOM05D002505 ORTHO05D006559 1.0e-98 365.2 461 54.7
MELO3C016182.2 Cucumis melo HOM05D002505 ORTHO05D006559 4.0e-95 353.2 463 52.3
Potri.015G137000 Populus trichocarpa HOM05D002505 ORTHO05D006559 1.2e-94 351.7 521 47.8
Nn4g25029 Nelumbo nucifera HOM05D002505 ORTHO05D006559 2.0e-94 350.9 456 50.7
TWI59G0446 Tripterygium wilfordii HOM05D002505 ORTHO05D006559 5.7e-94 349.4 455 50.5
CSS0039073 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 1.3e-93 348.2 530 49.1
Sed0021026 Sechium edule HOM05D002505 ORTHO05D006559 6.3e-93 345.9 475 50.7
Gohir.D13G211600 Gossypium hirsutum HOM05D002505 ORTHO05D006559 1.2e-91 341.7 528 49.1
Gorai.013G241700 Gossypium raimondii HOM05D002505 ORTHO05D006559 1.6e-91 341.3 532 49.2
Rhsim09G0088500 Rhododendron simsii HOM05D002505 ORTHO05D006559 5.9e-91 339.3 530 48.1
CsaV3_4G007590 Cucumis sativus L. HOM05D002505 ORTHO05D006559 1.3e-90 338.2 499 50.3
Gohir.A13G207000 Gossypium hirsutum HOM05D002505 ORTHO05D006559 2.3e-90 337.4 524 47.7
Duzib168G0650 Durio zibethinus HOM05D002505 ORTHO05D006559 8.6e-90 335.5 529 47.4
CANSAT21G0880 Cannabis sativa HOM05D002505 ORTHO05D006559 1.2e-88 331.6 421 51.5
MD10G1217100 Malus domestica HOM05D002505 ORTHO05D006559 2.1e-88 330.9 536 47.9
EL10Ac5g10510 Beta vulgaris HOM05D002505 ORTHO05D006559 3.6e-88 330.1 543 45.1
CSS0016681 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 4.7e-88 329.7 537 45.3
Thecc.09G195000 Theobroma cacao HOM05D002505 ORTHO05D006559 8.0e-88 328.9 337 59.1
Actinidia12750 Actinidia chinensis HOM05D002505 ORTHO05D006559 1.4e-87 328.2 421 51.3
AUR62011379 Chenopodium quinoa HOM05D002505 ORTHO05D006559 1.8e-87 327.8 444 48.6
Cpa.g.sc77.87 Carica papaya HOM05D002505 ORTHO05D006559 2.3e-87 327.4 521 48.6
Prupe.4G127000 Prunus persica HOM05D002505 ORTHO05D006559 6.8e-87 325.9 517 48.4
Atru.chr1.1039 Acer truncatum HOM05D002505 ORTHO05D006559 2.0e-86 324.3 529 48.2
MD05G1239100 Malus domestica HOM05D002505 ORTHO05D006559 4.4e-86 323.2 510 50.0
FAN16G0440 Fragaria x ananassa HOM05D002505 ORTHO05D006559 5.8e-86 322.8 514 48.4
vmacro00789 Vaccinium macrocarpon HOM05D002505 ORTHO05D006559 5.8e-86 322.8 551 44.8
FvH4_3g14000 Fragaria vesca HOM05D002505 ORTHO05D006559 1.3e-85 321.6 532 45.3
Eucgr.D02598 Eucalyptus grandis HOM05D002505 ORTHO05D006559 2.2e-85 320.9 519 46.4
FAN25G1470 Fragaria x ananassa HOM05D002505 ORTHO05D006559 4.9e-85 319.7 524 47.3
Solyc01g098030.4 Solanum lycopersicum HOM05D002505 ORTHO05D006559 4.9e-85 319.7 341 57.8
MSTRG.14571 Avicennia marina HOM05D002505 ORTHO05D006559 8.3e-85 318.9 428 49.8
PGR102G1955 Punica granatum HOM05D002505 ORTHO05D006559 1.4e-84 318.2 521 47.4
PGSC0003DMG400022499 Solanum tuberosum HOM05D002505 ORTHO05D006559 3.2e-84 317.0 476 48.3
Peaxi162Scf00225g00129 Petunia axillaris HOM05D002505 ORTHO05D006559 4.1e-84 316.6 385 51.2
RcHm_v2.0_Chr5g0023231 Rosa chinensis HOM05D002505 ORTHO05D006559 4.1e-84 316.6 519 48.9
FAN21G2970 Fragaria x ananassa HOM05D002505 ORTHO05D006559 5.4e-84 316.2 525 47.4
AUR62016680 Chenopodium quinoa HOM05D002505 ORTHO05D006559 2.7e-83 313.9 415 51.6
Cc05_g16590 Coffea canephora HOM05D002505 ORTHO05D006559 3.5e-83 313.5 380 52.9
Oeu019749.1 Olea europaea HOM05D002505 ORTHO05D006559 2.3e-82 310.8 350 53.4
Sopen01g041610 Solanum pennellii HOM05D002505 ORTHO05D006559 2.3e-82 310.8 434 50.2
Ah.09g227860 Amaranthus hybridus HOM05D002505 ORTHO05D006559 1.5e-81 308.1 437 46.0
Nitab4.5_0002840g0110 Nicotiana tabacum HOM05D002505 ORTHO05D006559 1.9e-81 307.8 344 56.4
Hund09330 Selenicereus undatus HOM05D002505 ORTHO05D006559 1.9e-81 307.8 526 45.8
Atru.chr3.1220 Acer truncatum HOM05D002505 ORTHO05D006559 3.3e-81 307.0 521 45.1
GSVIVG01031552001 Vitis vinifera HOM05D002505 ORTHO05D006559 5.6e-81 306.2 208 69.7
Manes.08G161700 Manihot esculenta HOM05D002505 ORTHO05D006559 9.5e-81 305.4 502 48.2
AUR62002958 Chenopodium quinoa HOM05D002505 ORTHO05D006559 2.1e-80 304.3 432 44.9
Migut.H01653 Erythranthe guttata HOM05D002505 ORTHO05D006559 2.8e-80 303.9 341 56.6
Sabra15G0148600 Salix brachista HOM05D002505 ORTHO05D006559 4.7e-80 303.1 528 41.5
FAN11G2806 Fragaria x ananassa HOM05D002505 ORTHO05D006559 1.8e-79 301.2 513 44.8
AUR62007763 Chenopodium quinoa HOM05D002505 ORTHO05D006559 3.1e-79 300.4 432 45.4
Rhsim06G0244600 Rhododendron simsii HOM05D002505 ORTHO05D006559 4.0e-79 300.1 501 47.1
CDE05G0972 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 4.4e-78 296.6 425 46.8
CARHR043910 Cardamine hirsuta HOM05D002505 ORTHO05D006559 2.9e-77 293.9 574 42.3
Nitab4.5_0002361g0170 Nicotiana tabacum HOM05D002505 ORTHO05D006559 3.7e-77 293.5 333 55.6
CAN.G134.186 Capsicum annuum HOM05D002505 ORTHO05D006559 3.2e-76 290.4 376 50.3
SGA_v2.0_scaffold49G18207 Striga asiatica HOM05D002505 ORTHO05D006559 9.2e-76 288.9 473 45.7
Carub.0001s4291 Capsella rubella HOM05D002505 ORTHO05D006559 6.0e-75 286.2 563 43.7
AL1G62310 Arabidopsis lyrata HOM05D002505 ORTHO05D006559 1.0e-74 285.4 554 43.9
AT1G53645 Arabidopsis thaliana HOM05D002505 ORTHO05D006559 1.3e-74 285.0 554 43.9
Lsat_1_v5_gn_5_3041 Lactuca sativa HOM05D002505 ORTHO05D006559 1.5e-73 281.6 516 44.8
THA.LOC104822601 Tarenaya hassleriana HOM05D002505 ORTHO05D006559 1.5e-73 281.6 422 46.7
SHI32899 Sapria himalayana HOM05D002505 ORTHO05D006559 2.3e-71 274.2 448 44.2
BraA06t23318Z Brassica rapa HOM05D001023 ORTHO05D006559 5.2e-71 273.1 538 45.7
Sp1g40180 Schrenkiella parvula HOM05D002505 ORTHO05D006559 8.9e-71 272.3 443 45.1
HPP92_002279 Vanilla planifolia HOM05D002505 ORTHO05D006559 1.2e-70 271.9 395 44.3
ECA246G4077 Erigeron canadensis HOM05D002505 ORTHO05D006559 2.0e-70 271.2 492 42.5
HanXRQChr05g0159341 Helianthus annuus HOM05D002505 ORTHO05D006559 5.8e-70 269.6 312 49.0
ATR0057G033 Amborella trichopoda HOM05D002505 ORTHO05D006559 9.9e-70 268.9 423 46.1
PSO170G3666 Papaver somniferum HOM05D002505 ORTHO05D006559 1.3e-69 268.5 483 42.4
PSO017G2893 Papaver somniferum HOM05D002505 ORTHO05D006559 6.4e-69 266.2 485 41.9
Thhalv10011382m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 8.3e-69 265.8 447 45.9
Aqoxy1G00117 Aquilegia oxysepala HOM05D002505 ORTHO05D006559 5.4e-68 263.1 469 43.5
CDE02G1608 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 7.1e-68 262.7 341 50.4
BcaB02g10898 Brassica carinata HOM05D002505 ORTHO05D006559 4.6e-67 260.0 448 44.4
A06p00890 Brassica napus HOM05D001023 ORTHO05D006559 1.3e-66 258.5 578 42.7
C06p09440 Brassica napus HOM05D001023 ORTHO05D006559 1.5e-65 255.0 330 51.5
Ciclev10019766m.g Citrus clementina HOM05D002505 ORTHO05D006559 1.6e-64 251.5 395 46.8
BcaB07g33312 Brassica carinata HOM05D002505 ORTHO05D006559 3.6e-64 250.4 337 49.9
DCAR_009664 Daucus carota HOM05D002505 ORTHO05D006559 1.2e-62 245.4 524 41.8
Lj1C206G15 Lonicera japonica HOM05D002505 ORTHO05D006559 2.0e-62 244.6 291 50.5
BcaC08g43545 Brassica carinata HOM05D002505 ORTHO05D006559 7.6e-62 242.7 531 42.6
unitig_21.g20249 Utricularia gibba HOM05D002505 ORTHO05D006559 7.6e-62 242.7 203 58.6
BolC6t36013H Brassica oleracea HOM05D001023 ORTHO05D006559 1.3e-61 241.9 534 42.5
Zm00001eb060430 Zea mays HOM05D002505 ORTHO05D006559 1.3e-61 241.9 465 41.1
Aa31LG10G1650 Aethionema arabicum HOM05D002505 ORTHO05D006559 1.7e-61 241.5 436 40.4
Os06g0664400 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D006559 1.3e-58 231.9 315 49.5
Dinv17234 Davidia involucrata HOM05D002505 ORTHO05D006559 4.8e-56 223.4 429 44.1
BolC6t36693H Brassica oleracea HOM05D002505 ORTHO05D006559 2.9e-53 214.2 165 61.8
Haze_18498 Corylus avellana HOM05D002505 ORTHO05D006559 3.2e-52 210.7 341 47.8
QL04p094522 Quercus lobata HOM05D002505 ORTHO05D000632 2.5e-49 201.1 611 33.2
C06p15180 Brassica napus HOM05D002505 ORTHO05D006559 6.2e-48 196.4 139 67.6
A05p18000 Brassica napus HOM05D002505 ORTHO05D006559 8.1e-48 196.1 177 54.8
BraA05t20694Z Brassica rapa HOM05D002505 ORTHO05D006559 8.1e-48 196.1 177 54.8
Glyma.15G135900 Glycine max HOM05D002505 ORTHO05D006559 5.6e-41 173.3 131 67.2
Thhalv10012156m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 2.8e-40 171.0 107 73.8
BcaC08g44112 Brassica carinata HOM05D002505 ORTHO05D006559 1.1e-36 159.1 139 58.3
Ah.13g066500 Amaranthus hybridus HOM05D002505 ORTHO05D006559 5.5e-36 156.8 327 38.2
Dinv29488 Davidia involucrata HOM05D002505 ORTHO05D006559 2.3e-34 151.4 90 76.7
Ah.07g202770 Amaranthus hybridus HOM05D002505 ORTHO05D006559 1.1e-28 132.5 91 70.3
CSS0015020 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 2.5e-25 121.3 394 36.8
Mapoly0043s0004 Marchantia polymorpha HOM05D002505 ORTHO05D006559 1.8e-23 115.2 179 35.8
AagrBONN_evm.TU.Sc2ySwM_228.276 Anthoceros agrestis HOM05D002505 ORTHO05D006559 3.1e-23 114.4 190 35.8
Pp3c12_26140 Physcomitrium patens HOM05D002505 ORTHO05D006559 5.0e-21 107.1 143 37.8
Actinidia26206 Actinidia chinensis HOM05D002505 ORTHO05D006559 6.1e-19 100.1 64 71.9
QL04p094482 Quercus lobata HOM05D000280 ORTHO05D006559 3.9e-18 97.4 63 76.2
RcHm_v2.0_Chr5g0023281 Rosa chinensis HOM05D002505 ORTHO05D006559 1.5e-17 95.5 62 77.4
Haze_18499 Corylus avellana HOM05D002505 ORTHO05D006559 1.7e-16 92.0 62 72.6
Ah.13g066490 Amaranthus hybridus HOM05D002505 ORTHO05D006559 1.4e-15 89.0 63 71.4
SEGI_13390 Sequoiadendron giganteum HOM05D002505 ORTHO05D006559 1.4e-15 89.0 82 51.2
COL.COLO4_21461 Corchorus olitorius HOM05D002505 ORTHO05D006559 2.7e-11 74.7 296 34.5
Actinidia26205 Actinidia chinensis HOM05D002505 ORTHO05D006559 3.7e-08 64.3 210 33.8
arahy.Tifrunner.gnm1.ann1.V3D0DH Arachis hypogaea HOM05D005511 ORTHO05D006616 2.4e-07 61.6 84 48.8
CBR_g41404 Chara braunii HOM05D002505 ORTHO05D006559 2.4e-07 61.6 72 37.5


User provided reference genes

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