Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.GHD6QC Arachis hypogaea HOM05D004453 ORTHO05D005375 3.1e-134 481.9 252 100.0
arahy.Tifrunner.gnm1.ann1.C35Y2E Arachis hypogaea HOM05D004453 ORTHO05D005375 3.2e-131 471.9 252 98.0
Lalb_Chr16g0385441 Lupinus albus HOM05D004453 ORTHO05D005375 7.6e-101 370.9 249 76.7
Glyma.20G024900 Glycine max HOM05D004453 ORTHO05D005375 1.8e-97 359.8 252 75.8
Glyma.07G225000 Glycine max HOM05D004453 ORTHO05D005375 3.3e-96 355.5 243 76.5
Ca_18793_v3 Cicer arietinum L. HOM05D004453 ORTHO05D005375 1.6e-95 353.2 240 76.7
Psat7g133480 Pisum sativum HOM05D004453 ORTHO05D005375 6.2e-95 351.3 243 76.1
Lj4g0023466 Lotus japonicus HOM05D004453 ORTHO05D005375 1.1e-94 350.5 243 77.0
Phvul.002G101400 Phaseolus vulgaris HOM05D004453 ORTHO05D005375 1.1e-94 350.5 252 73.8
TPR.G34071 Trifolium pratense HOM05D004453 ORTHO05D005375 1.4e-94 350.1 254 75.2
Medtr4g083300 Medicago truncatula HOM05D004453 ORTHO05D005375 9.9e-93 344.0 231 78.4
VMungo0251G3504 Vigna mungo HOM05D004453 ORTHO05D005375 1.4e-83 313.5 199 78.9
Lalb_Chr05g0219881 Lupinus albus HOM05D004453 ORTHO05D005375 2.5e-80 302.8 200 77.0
CARHR045220 Cardamine hirsuta HOM05D004453 ORTHO05D005375 2.2e-79 299.7 242 69.8
Cpa.g.sc119.21 Carica papaya HOM05D004453 ORTHO05D005375 1.8e-78 296.6 201 77.1
Thhalv10011735m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 3.1e-78 295.8 240 68.8
THA.LOC104815673 Tarenaya hassleriana HOM05D004453 ORTHO05D005375 5.3e-78 295.0 238 69.7
Sp1g41150 Schrenkiella parvula HOM05D004453 ORTHO05D005375 9.0e-78 294.3 240 68.8
Dinv03791 Davidia involucrata HOM05D004453 ORTHO05D005375 1.2e-77 293.9 232 66.4
Carub.0001s4404 Capsella rubella HOM05D004453 ORTHO05D005375 1.5e-77 293.5 247 66.8
BcaC08g44204 Brassica carinata HOM05D004453 ORTHO05D005375 2.0e-77 293.1 240 69.2
BolC6t36812H Brassica oleracea HOM05D004453 ORTHO05D005375 2.0e-77 293.1 240 69.2
Manes.17G052200 Manihot esculenta HOM05D004453 ORTHO05D005375 3.4e-77 292.4 247 66.8
TWI34G0101 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 5.9e-77 291.6 242 66.5
AL1G63560 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 2.9e-76 289.3 244 66.4
AT1G55535 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 3.8e-76 288.9 247 66.4
C06p16140 Brassica napus HOM05D004453 ORTHO05D005375 5.0e-76 288.5 239 68.6
Prupe.6G001400 Prunus persica HOM05D004453 ORTHO05D005375 5.0e-76 288.5 236 69.1
GSVIVG01025506001 Vitis vinifera HOM05D004453 ORTHO05D005375 5.0e-76 288.5 238 66.8
TWI60G0130 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 1.9e-75 286.6 235 67.2
Dinv13490 Davidia involucrata HOM05D004453 ORTHO05D005375 2.5e-75 286.2 244 62.7
Eucgr.J01746 Eucalyptus grandis HOM05D004453 ORTHO05D005375 2.5e-75 286.2 235 68.5
Sed0012812 Sechium edule HOM05D004453 ORTHO05D005375 2.5e-75 286.2 246 63.8
CsaV3_4G017680 Cucumis sativus L. HOM05D004453 ORTHO05D005375 4.2e-75 285.4 246 63.4
Ciclev10016282m.g Citrus clementina HOM05D004453 ORTHO05D005375 5.5e-75 285.0 266 63.2
MD11G1001200 Malus domestica HOM05D004453 ORTHO05D005375 5.5e-75 285.0 248 65.3
Cfa009532 Carpinus fangiana HOM05D004453 ORTHO05D005375 7.2e-75 284.6 247 66.4
Manes.16G034900 Manihot esculenta HOM05D004453 ORTHO05D005375 1.6e-74 283.5 240 66.7
QL01p007925 Quercus lobata HOM05D004453 ORTHO05D005375 1.6e-74 283.5 233 68.7
Cc01_g00270 Coffea canephora HOM05D004453 ORTHO05D005375 2.1e-74 283.1 255 61.2
BcaC01g01533 Brassica carinata HOM05D004453 ORTHO05D005375 2.7e-74 282.7 242 66.9
ClCG02G024480 Citrullus lanatus HOM05D004453 ORTHO05D005375 3.6e-74 282.3 199 72.9
MD03G1001500 Malus domestica HOM05D004453 ORTHO05D005375 3.6e-74 282.3 249 65.5
BcaB02g10815 Brassica carinata HOM05D004453 ORTHO05D005375 1.4e-73 280.4 239 67.8
A05p17380 Brassica napus HOM05D004453 ORTHO05D005375 1.4e-73 280.4 242 67.8
C03p92850 Brassica napus HOM05D004453 ORTHO05D005375 1.8e-73 280.0 252 65.9
BolC3t21591H Brassica oleracea HOM05D004453 ORTHO05D005375 1.8e-73 280.0 252 65.9
PGR119G0742 Punica granatum HOM05D004453 ORTHO05D005375 1.8e-73 280.0 242 66.1
A08p00560 Brassica napus HOM05D004453 ORTHO05D005375 3.9e-73 278.9 247 65.6
BraA08t32115Z Brassica rapa HOM05D004453 ORTHO05D005375 5.1e-73 278.5 247 65.6
FvH4_3g45940 Fragaria vesca HOM05D004453 ORTHO05D005375 5.1e-73 278.5 237 65.0
FAN21G0323 Fragaria x ananassa HOM05D004453 ORTHO05D005375 5.1e-73 278.5 237 65.0
FAN11G3564 Fragaria x ananassa HOM05D004453 ORTHO05D005375 8.8e-73 277.7 236 65.3
Atru.chr4.902 Acer truncatum HOM05D004453 ORTHO05D005375 1.1e-72 277.3 239 65.7
FAN25G0403 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.1e-72 277.3 236 64.8
FAN16G2113 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.5e-72 276.9 237 64.1
Rhsim01G0183700 Rhododendron simsii HOM05D004453 ORTHO05D005375 2.0e-72 276.6 244 65.2
Oeu023964.1 Olea europaea HOM05D004453 ORTHO05D005375 2.5e-72 276.2 256 60.5
RcHm_v2.0_Chr5g0084051 Rosa chinensis HOM05D004453 ORTHO05D005375 4.3e-72 275.4 244 63.9
vmacro12597 Vaccinium macrocarpon HOM05D004453 ORTHO05D005375 5.7e-72 275.0 202 70.3
Nn7g35809 Nelumbo nucifera HOM05D004453 ORTHO05D005375 1.7e-71 273.5 242 63.2
Actinidia16228 Actinidia chinensis HOM05D004453 ORTHO05D005375 1.4e-70 270.4 247 59.5
CSS0040072 Camellia sinensis var. sinensis HOM05D004453 ORTHO05D005375 3.1e-70 269.2 248 61.7
MELO3C031044.2 Cucumis melo HOM05D004453 ORTHO05D005375 3.1e-70 269.2 208 68.8
TAR623G1190 Trochodendron aralioides HOM05D004453 ORTHO05D005375 6.9e-70 268.1 236 62.3
Thecc.09G205600 Theobroma cacao HOM05D004453 ORTHO05D005375 2.0e-69 266.5 254 61.8
Potri.001G001400 Populus trichocarpa HOM05D004453 ORTHO05D005375 3.4e-69 265.8 192 74.5
AUR62040892 Chenopodium quinoa HOM05D001653 ORTHO05D001751 1.3e-68 263.8 219 65.3
Nn2g15897 Nelumbo nucifera HOM05D004453 ORTHO05D005375 1.7e-68 263.5 237 61.6
Aqoxy1G00087 Aquilegia oxysepala HOM05D004453 ORTHO05D005375 2.2e-68 263.1 232 64.2
Sabra01G0001000 Salix brachista HOM05D004453 ORTHO05D005375 2.2e-68 263.1 192 71.9
AUR62042621 Chenopodium quinoa HOM05D004453 ORTHO05D005375 3.8e-68 262.3 239 60.7
DCAR_023824 Daucus carota HOM05D004453 ORTHO05D005375 8.5e-68 261.2 208 66.8
Ah.04g153920 Amaranthus hybridus HOM05D004453 ORTHO05D005375 1.1e-67 260.8 218 64.2
Eucgr.B03584 Eucalyptus grandis HOM05D004453 ORTHO05D005375 1.9e-67 260.0 216 65.3
Sc13g0003960 Simmondsia chinensis HOM05D004453 ORTHO05D005375 2.5e-67 259.6 201 66.7
PGR102G2973 Punica granatum HOM05D004453 ORTHO05D005375 3.2e-67 259.2 242 61.2
Duzib150G1073 Durio zibethinus HOM05D004453 ORTHO05D005375 5.5e-67 258.5 258 60.5
Solyc01g050070.4 Solanum lycopersicum HOM05D004453 ORTHO05D005375 9.4e-67 257.7 200 65.5
Hund01806 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.2e-66 257.3 262 58.4
PSO339G2035 Papaver somniferum HOM05D004453 ORTHO05D005375 2.1e-66 256.5 234 61.1
Sopen01g019490 Solanum pennellii HOM05D004453 ORTHO05D005375 2.1e-66 256.5 200 65.0
Peaxi162Scf00186g01212 Petunia axillaris HOM05D004453 ORTHO05D005375 2.7e-66 256.1 234 59.4
Migut.N00531 Erythranthe guttata HOM05D004453 ORTHO05D005375 4.7e-66 255.4 247 59.5
Aa31LG10G710 Aethionema arabicum HOM05D004453 ORTHO05D005375 1.0e-65 254.2 237 62.0
PSO384G0395 Papaver somniferum HOM05D004453 ORTHO05D005375 1.8e-65 253.4 234 60.3
TAR369G0719 Trochodendron aralioides HOM05D004453 ORTHO05D005375 3.9e-65 252.3 236 60.2
MBI19_g09317_MAGBIO Magnolia biondii HOM05D004453 ORTHO05D005375 6.7e-65 251.5 237 60.8
COL.COLO4_35070 Corchorus olitorius HOM05D004453 ORTHO05D005375 3.3e-64 249.2 243 62.1
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 1.3e-63 247.3 227 63.4
EL10Ac7g17533 Beta vulgaris HOM05D004453 ORTHO05D005375 1.4e-62 243.8 242 59.5
Gohir.A03G021700 Gossypium hirsutum HOM05D004453 ORTHO05D005375 1.8e-62 243.4 214 64.5
Gohir.D03G147000 Gossypium hirsutum HOM05D004453 ORTHO05D005375 1.8e-62 243.4 202 65.8
CiPaw.13G179200 Carya illinoinensis HOM05D004453 ORTHO05D005375 3.1e-62 242.7 237 60.3
Thhalv10021458m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 3.1e-62 242.7 214 61.7
HanXRQChr14g0437111 Helianthus annuus HOM05D004453 ORTHO05D005375 4.1e-62 242.3 225 60.0
Aa31LG8G630 Aethionema arabicum HOM05D004453 ORTHO05D005375 5.3e-62 241.9 198 65.2
Gohir.A08G014200 Gossypium hirsutum HOM05D004453 ORTHO05D005375 1.2e-61 240.7 234 60.7
Gorai.003G154400 Gossypium raimondii HOM05D004453 ORTHO05D005375 2.0e-61 240.0 202 64.9
CARHR088030 Cardamine hirsuta HOM05D004453 ORTHO05D005375 7.7e-61 238.0 257 58.0
ECA238G2653 Erigeron canadensis HOM05D004453 ORTHO05D005375 2.2e-60 236.5 241 56.8
MSTRG.18889 Avicennia marina HOM05D004453 ORTHO05D005375 3.8e-60 235.7 255 53.7
Gohir.D08G020800 Gossypium hirsutum HOM05D004453 ORTHO05D005375 1.4e-59 233.8 234 59.0
Gorai.004G020100 Gossypium raimondii HOM05D004453 ORTHO05D005375 1.4e-59 233.8 234 59.0
Carub.0003s1279 Capsella rubella HOM05D004453 ORTHO05D005375 1.9e-59 233.4 262 54.6
SGA_v2.0_scaffold6G03329 Striga asiatica HOM05D004453 ORTHO05D005375 1.9e-59 233.4 240 55.0
AL3G25290 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 4.2e-59 232.3 262 55.3
CDE02G3000 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 5.5e-59 231.9 243 53.5
Sp3g11610 Schrenkiella parvula HOM05D004453 ORTHO05D005375 1.2e-58 230.7 262 56.5
AT3G13420 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 4.7e-58 228.8 172 70.3
CDE04G0921 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 4.7e-58 228.8 186 62.9
Haze_22921 Corylus avellana HOM05D004453 ORTHO05D005375 4.7e-58 228.8 214 63.6
ATR0068G064 Amborella trichopoda HOM05D004453 ORTHO05D005375 6.1e-58 228.4 219 59.8
PSO675G3694 Papaver somniferum HOM05D004453 ORTHO05D005375 6.1e-58 228.4 197 62.4
Potri.003G223300 Populus trichocarpa HOM05D004453 ORTHO05D005375 1.4e-57 227.3 231 56.7
PSO541G5087 Papaver somniferum HOM05D004453 ORTHO05D005375 3.0e-57 226.1 197 61.4
HPP92_000788 Vanilla planifolia HOM05D004453 ORTHO05D005375 6.7e-57 224.9 230 56.1
ECA248G0105 Erigeron canadensis HOM05D004453 ORTHO05D005375 1.1e-56 224.2 235 55.3
HPP92_026813 Vanilla planifolia HOM05D004453 ORTHO05D005375 1.1e-56 224.2 229 55.9
SGA_v2.0_scaffold3G01700 Striga asiatica HOM05D004453 ORTHO05D005375 2.0e-56 223.4 206 58.7
A05p36110 Brassica napus HOM05D004453 ORTHO05D005375 3.3e-56 222.6 160 71.9
Zm00001eb303530 Zea mays HOM05D004453 ORTHO05D005375 3.3e-56 222.6 234 56.0
Os07g0223700 Oryza sativa ssp. japonica HOM05D004453 ORTHO05D005375 3.7e-55 219.2 231 55.8
C05p54480 Brassica napus HOM05D004453 ORTHO05D005375 2.4e-54 216.5 275 49.8
BolC5t34115H Brassica oleracea HOM05D004453 ORTHO05D005375 2.4e-54 216.5 275 49.8
BcaC05g29180 Brassica carinata HOM05D004453 ORTHO05D005375 2.9e-52 209.5 144 72.9
Lsat_1_v5_gn_1_71301 Lactuca sativa HOM05D004453 ORTHO05D005375 5.0e-52 208.8 205 58.5
Lsat_1_v5_gn_2_50660 Lactuca sativa HOM05D004453 ORTHO05D005375 1.1e-51 207.6 216 55.6
Nitab4.5_0002355g0020 Nicotiana tabacum HOM05D004453 ORTHO05D005375 9.4e-51 204.5 200 57.0
SEGI_24089 Sequoiadendron giganteum HOM05D004453 ORTHO05D005375 8.0e-50 201.4 217 54.8
BraA05t20635Z Brassica rapa HOM05D004453 ORTHO05D005375 2.8e-47 193.0 126 77.0
SMO203G0107 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 3.5e-45 186.0 187 55.1
SHI31305 Sapria himalayana HOM05D004453 ORTHO05D005375 2.9e-44 183.0 197 55.8
Nitab4.5_0000075g0210 Nicotiana tabacum HOM05D004453 ORTHO05D005375 1.9e-43 180.3 235 46.8
SHI06880 Sapria himalayana HOM05D004453 ORTHO05D005375 1.9e-43 180.3 173 61.3
unitig_62.g23532 Utricularia gibba HOM05D004453 ORTHO05D005375 5.5e-43 178.7 244 48.4
AagrBONN_evm.TU.Sc2ySwM_228.4359 Anthoceros agrestis HOM05D004453 ORTHO05D005375 3.6e-42 176.0 191 52.9
SMO271G0148 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 3.6e-42 176.0 183 54.6
Mapoly0036s0042 Marchantia polymorpha HOM05D004453 ORTHO05D005375 1.8e-38 163.7 225 46.2
CARHR152870 Cardamine hirsuta HOM05D004453 ORTHO05D005375 3.1e-38 162.9 115 73.9
unitig_52.g17526 Utricularia gibba HOM05D004453 ORTHO05D005375 2.0e-37 160.2 243 46.5
SalBow3G0087 Salvia bowleyana HOM05D004453 ORTHO05D005375 1.7e-36 157.1 149 53.0
Pp3c14_21170 Physcomitrium patens HOM05D004453 ORTHO05D005375 1.1e-35 154.5 196 48.0
Pp3c1_38420 Physcomitrium patens HOM05D004453 ORTHO05D005375 2.1e-34 150.2 190 51.1
Pp3c2_4610 Physcomitrium patens HOM05D004453 ORTHO05D005375 8.0e-34 148.3 208 45.7
Lj1C553T1 Lonicera japonica HOM05D004453 ORTHO05D005375 3.0e-33 146.4 94 77.7
SMO353G0048 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 1.7e-31 140.6 202 42.6
Actinidia30440 Actinidia chinensis HOM05D004453 ORTHO05D005375 9.2e-30 134.8 93 73.1
Lj1C553T2 Lonicera japonica HOM05D004453 ORTHO05D005375 1.1e-27 127.9 111 60.4
HPP92_019023 Vanilla planifolia HOM05D004453 ORTHO05D005375 1.5e-24 117.5 93 62.4
Oeu060910.1 Olea europaea HOM05D004453 ORTHO05D005375 1.9e-22 110.5 133 48.1
Psat5g028160 Pisum sativum HOM05D004453 ORTHO05D005375 9.2e-22 108.2 102 62.7
Psat5g028080 Pisum sativum HOM05D004453 ORTHO05D005375 1.2e-21 107.8 99 58.6
BcaB01g02219 Brassica carinata HOM05D004453 ORTHO05D005375 6.8e-17 92.0 113 46.9
SMO308G0081 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 6.4e-15 85.5 150 43.3
Zm00001eb095200 Zea mays HOM05D004453 ORTHO05D005375 6.0e-13 79.0 103 48.5
CBR_g35002 Chara braunii HOM05D000321 ORTHO05D000204 5.8e-08 62.4 63 57.1
MCO11G868 Micromonas commoda HOM05D004453 ORTHO05D005375 9.9e-08 61.6 180 26.7
BcaC04g20719 Brassica carinata HOM05D004453 ORTHO05D014925 5.4e-06 55.8 86 43.0


User provided reference genes

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