Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.GGZS5I Arachis hypogaea HOM05D003956 ORTHO05D004850 3.3e-40 167.9 85 100.0
arahy.Tifrunner.gnm1.ann1.I3NY02 Arachis hypogaea HOM05D003956 ORTHO05D004850 3.4e-13 78.2 68 69.1
arahy.Tifrunner.gnm1.ann1.DC6B04 Arachis hypogaea HOM05D003956 ORTHO05D004850 1.7e-12 75.9 48 83.3
arahy.Tifrunner.gnm1.ann1.9WT78J Arachis hypogaea HOM05D003956 ORTHO05D004850 2.2e-12 75.5 71 63.4
arahy.Tifrunner.gnm1.ann1.EQKV61 Arachis hypogaea HOM05D003956 ORTHO05D004850 1.1e-11 73.2 68 61.8
arahy.Tifrunner.gnm1.ann1.YQ8C5N Arachis hypogaea HOM05D003956 ORTHO05D004850 1.1e-11 73.2 68 61.8
Hund20662 Selenicereus undatus HOM05D003956 ORTHO05D004850 1.9e-11 72.4 68 60.3
EL10Ac1g01820 Beta vulgaris HOM05D003956 ORTHO05D004850 4.2e-11 71.2 68 60.3
Lalb_Chr13g0303991 Lupinus albus HOM05D003956 ORTHO05D004850 4.2e-11 71.2 43 81.4
Actinidia32373 Actinidia chinensis HOM05D003956 ORTHO05D004850 9.4e-11 70.1 71 59.2
TPR.G28133 Trifolium pratense HOM05D003956 ORTHO05D004850 9.4e-11 70.1 64 62.5
Lj4g0014830 Lotus japonicus HOM05D003956 ORTHO05D004850 1.6e-10 69.3 76 55.3
TPR.G28132 Trifolium pratense HOM05D003956 ORTHO05D004850 1.6e-10 69.3 43 81.4
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 2.1e-10 68.9 43 79.1
Psat0ss7919g0200 Pisum sativum HOM05D003956 ORTHO05D004850 2.1e-10 68.9 43 79.1
SGA_v2.0_scaffold142G35643 Striga asiatica HOM05D003956 ORTHO05D004850 2.1e-10 68.9 68 57.4
SGA_v2.0_scaffold86G26865 Striga asiatica HOM05D003956 ORTHO05D004850 2.1e-10 68.9 68 57.4
SGA_v2.0_scaffold86G26866 Striga asiatica HOM05D003956 ORTHO05D004850 2.7e-10 68.6 68 57.4
vmacro08238 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 2.7e-10 68.6 47 70.2
AUR62034949 Chenopodium quinoa HOM05D003956 ORTHO05D004850 3.6e-10 68.2 68 60.3
AUR62035456 Chenopodium quinoa HOM05D003956 ORTHO05D004850 3.6e-10 68.2 68 60.3
Cc03_g02730 Coffea canephora HOM05D003956 ORTHO05D004850 3.6e-10 68.2 48 68.8
Medtr4g118355 Medicago truncatula HOM05D003956 ORTHO05D004850 3.6e-10 68.2 76 55.3
arahy.Tifrunner.gnm1.ann1.G5444S Arachis hypogaea HOM05D003956 ORTHO05D004850 6.1e-10 67.4 71 60.6
Glyma.07G253700 Glycine max HOM05D003956 ORTHO05D004850 6.1e-10 67.4 76 53.9
Glyma.17G020600 Glycine max HOM05D003956 ORTHO05D004850 6.1e-10 67.4 76 53.9
VMungo1215G0684 Vigna mungo HOM05D003956 ORTHO05D004850 6.1e-10 67.4 76 53.9
Ciclev10006837m.g Citrus clementina HOM05D003956 ORTHO05D004850 7.9e-10 67.0 56 64.3
Prupe.1G146600 Prunus persica HOM05D003956 ORTHO05D004850 7.9e-10 67.0 56 62.5
Hma1.2p1_0511F.1_g169230 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 1.0e-09 66.6 68 58.8
Hma1.2p1_2025F.1_g311530 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 1.0e-09 66.6 68 58.8
QL06p005921 Quercus lobata HOM05D003956 ORTHO05D004850 1.0e-09 66.6 56 64.3
QL06p006231 Quercus lobata HOM05D003956 ORTHO05D004850 1.0e-09 66.6 53 64.2
MSTRG.10031 Avicennia marina HOM05D003956 ORTHO05D004850 1.4e-09 66.2 56 64.3
Haze_01011 Corylus avellana HOM05D003956 ORTHO05D004850 1.4e-09 66.2 71 56.3
Duzib212G0153 Durio zibethinus HOM05D003956 ORTHO05D004850 1.4e-09 66.2 76 52.6
Thecc.04G272600 Theobroma cacao HOM05D003956 ORTHO05D004850 1.4e-09 66.2 76 52.6
MSTRG.10030 Avicennia marina HOM05D003956 ORTHO05D004850 1.8e-09 65.9 43 76.7
Cpa.g.sc16.74 Carica papaya HOM05D003956 ORTHO05D004850 1.8e-09 65.9 76 51.3
Oeu032695.1 Olea europaea HOM05D003956 ORTHO05D004850 1.8e-09 65.9 76 51.3
Psat4g028880 Pisum sativum HOM05D003956 ORTHO05D004850 1.8e-09 65.9 56 62.5
Atru.chr4.2704 Acer truncatum HOM05D003956 ORTHO05D004850 2.3e-09 65.5 76 51.3
MELO3C006585.2 Cucumis melo HOM05D003956 ORTHO05D004850 2.3e-09 65.5 43 74.4
CsaV3_3G013930 Cucumis sativus L. HOM05D003956 ORTHO05D004850 2.3e-09 65.5 43 74.4
PGR004G0287 Punica granatum HOM05D003956 ORTHO05D004850 2.3e-09 65.5 76 53.9
Sabra10G0012900 Salix brachista HOM05D003956 ORTHO05D004850 2.3e-09 65.5 68 55.9
Sc25g0004550 Simmondsia chinensis HOM05D003956 ORTHO05D004850 2.3e-09 65.5 43 74.4
CSS0018237 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 3.0e-09 65.1 83 49.4
CANSAT78G1736 Cannabis sativa HOM05D003956 ORTHO05D004850 3.0e-09 65.1 56 62.5
Dinv44455 Davidia involucrata HOM05D003956 ORTHO05D004850 3.0e-09 65.1 43 74.4
Duzib151G0209 Durio zibethinus HOM05D003956 ORTHO05D004850 3.0e-09 65.1 56 64.3
Eucgr.H03642 Eucalyptus grandis HOM05D003956 ORTHO05D004850 3.0e-09 65.1 43 69.8
Gohir.D10G162900 Gossypium hirsutum HOM05D003956 ORTHO05D004850 3.0e-09 65.1 76 52.6
Gorai.011G181800 Gossypium raimondii HOM05D003956 ORTHO05D004850 3.0e-09 65.1 76 52.6
Phvul.003G098200 Phaseolus vulgaris HOM05D003956 ORTHO05D004850 3.0e-09 65.1 76 52.6
Duzib151G0049 Durio zibethinus HOM05D003956 ORTHO05D004850 3.9e-09 64.7 43 72.1
AUR62034328 Chenopodium quinoa HOM05D003956 ORTHO05D004850 5.1e-09 64.3 43 76.7
Migut.G00280 Erythranthe guttata HOM05D003956 ORTHO05D004850 5.1e-09 64.3 43 72.1
Migut.G00282 Erythranthe guttata HOM05D003956 ORTHO05D004850 5.1e-09 64.3 43 72.1
Nn3g21184 Nelumbo nucifera HOM05D003956 ORTHO05D004850 5.1e-09 64.3 43 72.1
Nitab4.5_0000059g0230 Nicotiana tabacum HOM05D003956 ORTHO05D004850 5.1e-09 64.3 56 62.5
CAN.G889.10 Capsicum annuum HOM05D003956 ORTHO05D004850 6.7e-09 63.9 56 60.7
Nn4g26122 Nelumbo nucifera HOM05D003956 ORTHO05D004850 6.7e-09 63.9 43 72.1
Rhsim04G0213100 Rhododendron simsii HOM05D003956 ORTHO05D004850 6.7e-09 63.9 56 62.5
vmacro15287 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 6.7e-09 63.9 68 54.4
Actinidia23451 Actinidia chinensis HOM05D003956 ORTHO05D004850 8.8e-09 63.5 43 72.1
ATR0626G228 Amborella trichopoda HOM05D003956 ORTHO05D004850 8.8e-09 63.5 56 58.9
CSS0013368 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 8.8e-09 63.5 43 76.7
Nitab4.5_0010477g0010 Nicotiana tabacum HOM05D003956 ORTHO05D004850 8.8e-09 63.5 56 62.5
Peaxi162Scf00095g00414 Petunia axillaris HOM05D003956 ORTHO05D004850 8.8e-09 63.5 56 62.5
TWI09G0935 Tripterygium wilfordii HOM05D003956 ORTHO05D004850 8.8e-09 63.5 43 72.1
arahy.Tifrunner.gnm1.ann1.989M5Y Arachis hypogaea HOM05D003956 ORTHO05D004850 1.1e-08 63.2 71 57.7
CiPaw.01G156600 Carya illinoinensis HOM05D003956 ORTHO05D004850 1.1e-08 63.2 56 62.5
Lsat_1_v5_gn_5_51481 Lactuca sativa HOM05D003956 ORTHO05D004850 1.1e-08 63.2 43 69.8
TAR365G1004 Trochodendron aralioides HOM05D003956 ORTHO05D004850 1.1e-08 63.2 43 69.8
Aa31LG9G1910 Aethionema arabicum HOM05D003956 ORTHO05D004850 1.5e-08 62.8 43 72.1
Ah.11g043140 Amaranthus hybridus HOM05D003956 ORTHO05D004850 1.5e-08 62.8 77 46.8
Potri.010G027800 Populus trichocarpa HOM05D003956 ORTHO05D004850 1.5e-08 62.8 76 50.0
unitig_749.g14056 Utricularia gibba HOM05D003956 ORTHO05D004850 1.5e-08 62.8 43 69.8
ECA240G3955 Erigeron canadensis HOM05D003956 ORTHO05D004850 1.9e-08 62.4 56 60.7
Lj3C806G12 Lonicera japonica HOM05D003956 ORTHO05D004850 1.9e-08 62.4 52 59.6
MD13G1177400 Malus domestica HOM05D003956 ORTHO05D004850 1.9e-08 62.4 71 50.7
Manes.03G188300 Manihot esculenta HOM05D003956 ORTHO05D004850 1.9e-08 62.4 76 50.0
RcHm_v2.0_Chr4g0420131 Rosa chinensis HOM05D003956 ORTHO05D004850 1.9e-08 62.4 56 60.7
Solyc01g080460.3 Solanum lycopersicum HOM05D003956 ORTHO05D004850 1.9e-08 62.4 56 60.7
Sopen01g032260 Solanum pennellii HOM05D003956 ORTHO05D004850 1.9e-08 62.4 56 60.7
BcaC06g32940 Brassica carinata HOM05D003956 ORTHO05D004850 2.5e-08 62.0 43 67.4
ClCG05G005590 Citrullus lanatus HOM05D003956 ORTHO05D004850 2.5e-08 62.0 43 69.8
DCAR_023283 Daucus carota HOM05D003956 ORTHO05D004850 2.5e-08 62.0 45 64.4
FvH4_4g16670 Fragaria vesca HOM05D003956 ORTHO05D004850 2.5e-08 62.0 56 58.9
FAN07G1911 Fragaria x ananassa HOM05D003956 ORTHO05D004850 2.5e-08 62.0 56 58.9
FAN12G0499 Fragaria x ananassa HOM05D003956 ORTHO05D004850 2.5e-08 62.0 56 58.9
FAN12G2270 Fragaria x ananassa HOM05D003956 ORTHO05D004850 2.5e-08 62.0 56 58.9
FAN17G1489 Fragaria x ananassa HOM05D003956 ORTHO05D004850 2.5e-08 62.0 56 58.9
FAN22G1243 Fragaria x ananassa HOM05D003956 ORTHO05D004850 2.5e-08 62.0 56 58.9
MD16G1179500 Malus domestica HOM05D003956 ORTHO05D004850 2.5e-08 62.0 71 52.1
Cfa015539 Carpinus fangiana HOM05D003956 ORTHO05D004850 3.3e-08 61.6 43 72.1
PGSC0003DMG400032107 Solanum tuberosum HOM05D003956 ORTHO05D004850 3.3e-08 61.6 43 69.8
unitig_26.g8936 Utricularia gibba HOM05D003956 ORTHO05D004850 3.3e-08 61.6 43 67.4
Actinidia40209 Actinidia chinensis HOM05D003956 ORTHO05D004850 4.3e-08 61.2 43 69.8
Rhsim02G0016700 Rhododendron simsii HOM05D003956 ORTHO05D004850 4.3e-08 61.2 68 51.5
Sed0002405 Sechium edule HOM05D003956 ORTHO05D004850 4.3e-08 61.2 43 69.8
BcaC06g33414 Brassica carinata HOM05D003956 ORTHO05D004850 5.7e-08 60.8 43 67.4
A03p49170 Brassica napus HOM05D003956 ORTHO05D004850 5.7e-08 60.8 43 67.4
C07p47210 Brassica napus HOM05D003956 ORTHO05D004850 5.7e-08 60.8 43 67.4
BolC7t45243H Brassica oleracea HOM05D003956 ORTHO05D004850 5.7e-08 60.8 43 67.4
BraA03t14011Z Brassica rapa HOM05D003956 ORTHO05D004850 5.7e-08 60.8 43 67.4
Eucgr.B01186 Eucalyptus grandis HOM05D003956 ORTHO05D004850 5.7e-08 60.8 43 67.4
MD16G1179300 Malus domestica HOM05D003956 ORTHO05D004850 5.7e-08 60.8 67 52.2
Sp7g13780 Schrenkiella parvula HOM05D003956 ORTHO05D004850 5.7e-08 60.8 76 50.0
GSVIVG01017850001 Vitis vinifera HOM05D003956 ORTHO05D004850 5.7e-08 60.8 56 58.9
THA.LOC104820228 Tarenaya hassleriana HOM05D003956 ORTHO05D004850 7.4e-08 60.5 76 48.7
CSS0033563 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 1.3e-07 59.7 76 47.4
CARHR222330 Cardamine hirsuta HOM05D003956 ORTHO05D004850 1.7e-07 59.3 43 65.1
MD16G1179400 Malus domestica HOM05D003956 ORTHO05D004850 1.7e-07 59.3 71 49.3
Thecc.04G272800 Theobroma cacao HOM05D003956 ORTHO05D004850 1.7e-07 59.3 46 63.0
Aqoxy2G03183 Aquilegia oxysepala HOM05D003956 ORTHO05D004850 2.2e-07 58.9 56 55.4
Pp3c5_22540 Physcomitrium patens HOM05D003956 ORTHO05D004850 2.2e-07 58.9 43 62.8
AL7G39990 Arabidopsis lyrata HOM05D003956 ORTHO05D004850 2.8e-07 58.5 43 65.1
SGA_v2.0_scaffold86G26869 Striga asiatica HOM05D000924 ORTHO05D001209 2.8e-07 58.5 52 55.8
AT4G15530 Arabidopsis thaliana HOM05D003956 ORTHO05D004850 3.7e-07 58.2 43 65.1
Carub.0007s2635 Capsella rubella HOM05D003956 ORTHO05D004850 3.7e-07 58.2 43 65.1
MD13G1177500 Malus domestica HOM05D003956 ORTHO05D004850 3.7e-07 58.2 43 65.1
PSO170G3340 Papaver somniferum HOM05D003956 ORTHO05D004850 3.7e-07 58.2 43 60.5
Zm00001eb287770 Zea mays HOM05D003956 ORTHO05D004850 4.8e-07 57.8 56 53.6
Zm00001eb349810 Zea mays HOM05D003956 ORTHO05D004850 4.8e-07 57.8 56 51.8
Os05g0405000 Oryza sativa ssp. japonica HOM05D003956 ORTHO05D004850 8.2e-07 57.0 56 50.0
Hund19586 Selenicereus undatus HOM05D003956 ORTHO05D004850 8.2e-07 57.0 43 62.8
Thhalv10024330m.g Eutrema salsugineum HOM05D003956 ORTHO05D004850 1.1e-06 56.6 43 62.8
PSO302G0065 Papaver somniferum HOM05D003956 ORTHO05D004850 1.1e-06 56.6 43 58.1
SalBow2G1708 Salvia bowleyana HOM05D003956 ORTHO05D004850 1.1e-06 56.6 68 50.0
A01p22040 Brassica napus HOM05D003956 ORTHO05D004850 1.4e-06 56.2 43 62.8
BraA01t02110Z Brassica rapa HOM05D003956 ORTHO05D004850 1.4e-06 56.2 43 62.8
CDE08G0632 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 1.4e-06 56.2 43 60.5
BcaC09g50243 Brassica carinata HOM05D003956 ORTHO05D004850 1.8e-06 55.8 43 62.8
BcaC09g50248 Brassica carinata HOM05D003956 ORTHO05D004850 1.8e-06 55.8 43 62.8
BcaNung00266 Brassica carinata HOM05D003956 ORTHO05D004850 1.8e-06 55.8 43 62.8
C01p27430 Brassica napus HOM05D003956 ORTHO05D004850 1.8e-06 55.8 43 62.8
BolC1t02682H Brassica oleracea HOM05D003956 ORTHO05D004850 1.8e-06 55.8 43 62.8
PGR031G3666 Punica granatum HOM05D003956 ORTHO05D004850 1.8e-06 55.8 43 65.1
Mapoly0009s0124 Marchantia polymorpha HOM05D003956 ORTHO05D004850 2.4e-06 55.5 43 60.5
CDE02G0811 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 4.1e-06 54.7 47 53.2
AagrBONN_evm.TU.Sc2ySwM_228.3276 Anthoceros agrestis HOM05D003956 ORTHO05D004850 5.3e-06 54.3 43 58.1
SMO351G0542 Selaginella moellendorffii HOM05D003956 ORTHO05D004850 9.1e-06 53.5 43 58.1


User provided reference genes

Program Settings