Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 2.7e-146 521.9 260 100.0
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 2.7e-146 521.9 260 100.0
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 3.1e-97 359.0 247 73.7
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 3.4e-96 355.5 247 72.9
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 1.3e-95 353.6 254 72.0
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 6.4e-95 351.3 247 72.9
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 1.9e-94 349.7 247 71.7
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 5.4e-94 348.2 246 72.4
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 1.2e-93 347.1 247 70.9
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 1.3e-92 343.6 247 71.3
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 1.1e-91 340.5 250 70.0
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 5.6e-91 338.2 254 70.1
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 8.1e-90 334.3 254 70.5
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 1.4e-89 333.6 247 70.0
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 5.5e-86 321.6 241 67.2
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 7.1e-86 321.2 249 67.5
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 7.9e-85 317.8 247 66.4
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 6.7e-84 314.7 248 65.3
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 1.9e-83 313.2 246 64.6
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 1.2e-77 293.9 242 63.2
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 4.6e-77 292.0 239 61.9
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 6.0e-77 291.6 246 58.9
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 6.7e-76 288.1 244 59.0
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 3.3e-75 285.8 239 61.9
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 4.3e-75 285.4 243 61.3
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 4.3e-75 285.4 237 60.3
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 2.1e-74 283.1 248 58.5
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 2.8e-74 282.7 241 60.6
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 3.7e-74 282.3 247 59.1
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 3.7e-74 282.3 246 56.9
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 4.1e-73 278.9 244 56.6
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 5.3e-73 278.5 246 57.3
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 6.9e-73 278.1 250 58.0
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 9.0e-73 277.7 202 65.8
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 2.0e-72 276.6 247 56.7
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 1.7e-71 273.5 247 56.3
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 2.9e-71 272.7 247 56.3
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 2.9e-71 272.7 240 58.3
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 2.9e-71 272.7 258 56.2
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 2.5e-70 269.6 241 56.8
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 5.5e-70 268.5 206 64.1
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 5.5e-70 268.5 238 59.7
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 7.2e-70 268.1 239 58.2
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 1.2e-69 267.3 252 52.4
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 2.1e-69 266.5 245 59.6
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 3.6e-69 265.8 187 70.6
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 4.6e-69 265.4 243 58.8
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 1.0e-68 264.2 241 56.4
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 1.8e-68 263.5 178 69.7
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 1.8e-68 263.5 178 69.7
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 2.3e-68 263.1 239 56.1
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 3.0e-68 262.7 237 58.2
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 3.0e-68 262.7 190 66.3
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 3.9e-68 262.3 245 56.3
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 5.1e-68 261.9 190 66.3
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 1.9e-67 260.0 239 54.8
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 2.5e-67 259.6 238 55.9
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 2.5e-67 259.6 185 66.5
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 4.3e-67 258.8 181 68.5
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 4.3e-67 258.8 181 68.5
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 4.3e-67 258.8 181 68.5
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 4.3e-67 258.8 209 59.8
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 5.7e-67 258.5 197 65.0
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 5.7e-67 258.5 185 68.6
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 5.7e-67 258.5 221 58.8
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.3e-66 257.3 242 55.0
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 1.7e-66 256.9 221 57.0
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.7e-66 256.9 241 55.6
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 2.2e-66 256.5 191 64.9
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 6.3e-66 255.0 199 61.3
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 1.1e-65 254.2 201 61.7
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 1.4e-65 253.8 189 65.1
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 1.8e-65 253.4 178 66.9
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 1.8e-65 253.4 180 67.8
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 4.1e-65 252.3 207 63.3
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 9.1e-65 251.1 238 57.1
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 2.0e-64 250.0 244 55.3
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 2.6e-64 249.6 207 62.8
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 2.6e-64 249.6 200 59.0
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 3.4e-64 249.2 236 52.5
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 5.9e-64 248.4 203 59.6
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 5.9e-64 248.4 206 60.7
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 5.9e-64 248.4 233 57.5
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 1.0e-63 247.7 200 59.0
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 2.2e-63 246.5 239 52.7
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 2.2e-63 246.5 176 65.9
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 3.8e-63 245.7 253 51.0
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 3.8e-63 245.7 244 52.9
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 5.0e-63 245.4 160 75.0
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.4e-62 243.8 200 58.0
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 2.5e-62 243.0 268 52.2
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 9.4e-62 241.1 175 64.0
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 9.4e-62 241.1 199 65.3
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 4.6e-61 238.8 224 55.4
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 7.9e-61 238.0 178 64.0
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 1.8e-60 236.9 179 62.6
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 5.1e-60 235.3 234 53.4
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 6.7e-60 235.0 214 54.2
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 1.7e-58 230.3 237 52.7
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 1.7e-58 230.3 208 54.3
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 1.1e-57 227.6 148 72.3
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 4.1e-57 225.7 148 70.9
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 9.1e-57 224.6 149 71.8
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 9.1e-57 224.6 155 73.5
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 1.2e-56 224.2 180 58.9
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 1.5e-56 223.8 183 56.8
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 2.2e-55 219.9 145 74.5
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 3.8e-55 219.2 260 47.7
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 8.5e-55 218.0 159 66.7
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 8.5e-55 218.0 173 58.4
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.4e-54 217.2 154 68.8
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 1.9e-54 216.9 197 55.8
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 2.5e-54 216.5 173 58.4
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 2.5e-54 216.5 173 59.0
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 1.2e-53 214.2 151 68.9
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 4.7e-53 212.2 140 71.4
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 6.1e-53 211.8 142 69.0
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 6.1e-53 211.8 145 67.6
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 1.4e-52 210.7 140 70.0
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 3.0e-52 209.5 199 54.8
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 2.0e-51 206.8 129 78.3
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.3e-50 204.1 191 52.4
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 1.8e-49 200.3 181 55.2
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 3.1e-49 199.5 200 55.5
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 9.1e-49 198.0 152 59.9
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 4.5e-48 195.7 158 58.2
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 7.7e-48 194.9 196 51.5
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 1.1e-46 191.0 247 44.5
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 4.2e-46 189.1 153 58.8
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 5.2e-44 182.2 155 56.8
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 7.5e-43 178.3 196 49.0
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 9.7e-43 177.9 178 56.2
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 1.3e-42 177.6 169 53.8
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 1.7e-42 177.2 154 54.5
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 2.8e-42 176.4 155 54.8
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 1.1e-41 174.5 246 41.9
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 1.8e-41 173.7 139 55.4
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 1.6e-40 170.6 178 49.4
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 4.4e-35 152.5 158 55.7
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 9.8e-35 151.4 198 39.9
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 2.8e-34 149.8 180 45.0
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 1.1e-30 137.9 142 53.5
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 7.0e-25 118.6 125 48.8
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 2.0e-24 117.1 156 44.9
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 5.2e-20 102.4 79 60.8
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 2.4e-17 93.6 148 35.8
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 3.2e-17 93.2 158 34.2
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 2.0e-16 90.5 132 34.1
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 2.1e-13 80.5 83 56.6
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 1.5e-11 74.3 230 29.1
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 2.0e-11 73.9 151 29.8
Nitab4.5_0007808g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.0e-11 73.9 82 42.7
QL02p051406 Quercus lobata HOM05D004693 ORTHO05D005545 1.9e-09 67.4 89 39.3
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.6e-08 64.3 163 27.6
Nitab4.5_0009855g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.1e-08 63.9 76 46.1
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 7.8e-08 62.0 124 27.4
CDE06G0519 Ceratophyllum demersum HOM05D004693 ORTHO05D005545 1.7e-07 60.8 59 49.2


User provided reference genes

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