Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.GD66SW Arachis hypogaea HOM05D004983 ORTHO05D005847 5.7e-178 627.5 318 100.0
arahy.Tifrunner.gnm1.ann1.TQ2Z41 Arachis hypogaea HOM05D004983 ORTHO05D005847 1.6e-124 449.9 236 97.0
Lalb_Chr08g0236081 Lupinus albus HOM05D004983 ORTHO05D005847 5.1e-102 375.2 271 72.0
VMungo1309G2496 Vigna mungo HOM05D004983 ORTHO05D005847 4.3e-101 372.1 241 77.6
Medtr0168s0080 Medicago truncatula HOM05D004983 ORTHO05D005847 7.3e-101 371.3 236 79.2
TPR.G37260 Trifolium pratense HOM05D004983 ORTHO05D005847 2.4e-99 366.3 235 78.7
Glyma.06G188000 Glycine max HOM05D004983 ORTHO05D005847 4.0e-99 365.5 237 77.2
Phvul.009G183500 Phaseolus vulgaris HOM05D004983 ORTHO05D005847 2.2e-97 359.8 236 76.7
Glyma.04G177000 Glycine max HOM05D004983 ORTHO05D005847 4.2e-96 355.5 236 77.1
Potri.012G072800 Populus trichocarpa HOM05D004983 ORTHO05D005847 2.3e-94 349.7 272 65.8
CiPaw.12G021900 Carya illinoinensis HOM05D004983 ORTHO05D005847 5.6e-93 345.1 263 67.3
Sabra12G0052000 Salix brachista HOM05D004983 ORTHO05D005847 1.3e-92 344.0 246 71.5
TPR.G19166 Trifolium pratense HOM05D004983 ORTHO05D005847 2.8e-92 342.8 214 80.8
CANSAT80G1912 Cannabis sativa HOM05D004983 ORTHO05D005847 3.7e-92 342.4 240 70.4
QL10p014085 Quercus lobata HOM05D004983 ORTHO05D005847 3.7e-92 342.4 244 70.9
Ciclev10021875m.g Citrus clementina HOM05D004983 ORTHO05D005847 1.1e-91 340.9 239 73.6
GSVIVG01008095001 Vitis vinifera HOM05D004983 ORTHO05D005847 1.1e-91 340.9 239 72.4
COL.COLO4_20718 Corchorus olitorius HOM05D004983 ORTHO05D005847 3.1e-91 339.3 255 68.2
FvH4_5g15990 Fragaria vesca HOM05D004983 ORTHO05D005847 6.9e-91 338.2 234 72.6
RcHm_v2.0_Chr7g0180081 Rosa chinensis HOM05D004983 ORTHO05D005847 1.2e-90 337.4 243 69.5
CsaV3_1G001940 Cucumis sativus L. HOM05D004983 ORTHO05D005847 3.4e-90 335.9 251 67.3
MD06G1184000 Malus domestica HOM05D004983 ORTHO05D005847 4.5e-90 335.5 241 70.5
Prupe.5G182700 Prunus persica HOM05D004983 ORTHO05D005847 4.5e-90 335.5 244 70.9
TAR374G1152 Trochodendron aralioides HOM05D000005 ORTHO05D000012 7.6e-90 334.7 235 71.5
Atru.chr9.2363 Acer truncatum HOM05D004983 ORTHO05D005847 9.9e-90 334.3 242 70.7
Haze_07411 Corylus avellana HOM05D004983 ORTHO05D005847 9.9e-90 334.3 273 63.7
FAN04G0333 Fragaria x ananassa HOM05D004983 ORTHO05D005847 9.9e-90 334.3 257 67.7
FAN18G0171 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.3e-89 334.0 233 72.1
Gohir.D10G187500 Gossypium hirsutum HOM05D004983 ORTHO05D005847 6.4e-89 331.6 242 69.4
Hma1.2p1_0572F.1_g181120 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 4.2e-88 328.9 233 71.7
FAN13G0935 Fragaria x ananassa HOM05D004983 ORTHO05D005847 5.5e-88 328.6 233 70.8
Eucgr.B00384 Eucalyptus grandis HOM05D004983 ORTHO05D005847 7.1e-88 328.2 237 67.9
Lsat_1_v5_gn_1_11380 Lactuca sativa HOM05D004983 ORTHO05D005847 1.2e-87 327.4 251 66.5
Manes.06G098600 Manihot esculenta HOM05D004983 ORTHO05D005847 3.5e-87 325.9 242 69.8
Thecc.K0001100 Theobroma cacao HOM05D004983 ORTHO05D005847 2.3e-86 323.2 242 67.4
HanXRQChr02g0045351 Helianthus annuus HOM05D004983 ORTHO05D005847 5.1e-86 322.0 230 71.7
PGR044G0258 Punica granatum HOM05D004983 ORTHO05D005847 1.1e-85 320.9 229 69.4
BraA02t05144Z Brassica rapa HOM05D001227 ORTHO05D001082 1.5e-85 320.5 239 65.3
AUR62021780 Chenopodium quinoa HOM05D004983 ORTHO05D005847 1.5e-85 320.5 237 67.5
Lj1g0016910 Lotus japonicus HOM05D004983 ORTHO05D005847 1.9e-85 320.1 197 80.7
Hund04599 Selenicereus undatus HOM05D004983 ORTHO05D005847 1.9e-85 320.1 277 62.5
CARHR200420 Cardamine hirsuta HOM05D004983 ORTHO05D005847 2.5e-85 319.7 234 68.8
Oeu022186.1 Olea europaea HOM05D004983 ORTHO05D005847 2.5e-85 319.7 237 68.8
C09p64060 Brassica napus HOM05D004983 ORTHO05D005847 3.3e-85 319.3 238 67.6
Thhalv10014312m.g Eutrema salsugineum HOM05D004983 ORTHO05D005847 4.3e-85 318.9 253 65.2
AT5G13050 Arabidopsis thaliana HOM05D004983 ORTHO05D005847 5.6e-85 318.5 254 63.4
BolC2t06531H Brassica oleracea HOM05D004983 ORTHO05D005847 7.4e-85 318.2 237 64.6
A02p01650 Brassica napus HOM05D001227 ORTHO05D001082 1.6e-84 317.0 236 65.7
AUR62008315 Chenopodium quinoa HOM05D004983 ORTHO05D005847 1.6e-84 317.0 257 63.8
BcaNung01856 Brassica carinata HOM05D001227 ORTHO05D001082 2.8e-84 316.2 233 65.7
C02p05860 Brassica napus HOM05D001227 ORTHO05D001082 2.8e-84 316.2 233 65.7
BolC9t59243H Brassica oleracea HOM05D004983 ORTHO05D005847 2.8e-84 316.2 238 66.8
AL6G23630 Arabidopsis lyrata HOM05D004983 ORTHO05D005847 3.7e-84 315.8 235 66.0
Aqoxy3G00847 Aquilegia oxysepala HOM05D004983 ORTHO05D005847 6.2e-84 315.1 240 68.3
A10p25150 Brassica napus HOM05D004983 ORTHO05D005847 6.2e-84 315.1 238 66.4
Aa31LG3G14620 Aethionema arabicum HOM05D004983 ORTHO05D005847 1.1e-83 314.3 250 64.4
Duzib205G0093 Durio zibethinus HOM05D004983 ORTHO05D005847 1.1e-83 314.3 237 66.7
BraA10t44577Z Brassica rapa HOM05D004983 ORTHO05D005847 1.4e-83 313.9 238 66.4
vmacro19336 Vaccinium macrocarpon HOM05D004983 ORTHO05D005847 1.4e-83 313.9 288 58.0
Sc12g0005910 Simmondsia chinensis HOM05D004983 ORTHO05D005847 2.4e-83 313.2 235 67.7
Cc04_g16050 Coffea canephora HOM05D004983 ORTHO05D005847 3.1e-83 312.8 237 67.1
Nitab4.5_0008162g0040 Nicotiana tabacum HOM05D004983 ORTHO05D005847 3.1e-83 312.8 257 63.0
Dinv13111 Davidia involucrata HOM05D004983 ORTHO05D005847 5.3e-83 312.0 256 64.8
Nn4g22978 Nelumbo nucifera HOM05D004983 ORTHO05D005847 5.3e-83 312.0 257 64.2
Nitab4.5_0000026g0320 Nicotiana tabacum HOM05D004983 ORTHO05D005847 9.0e-83 311.2 260 62.3
Actinidia04943 Actinidia chinensis HOM05D004983 ORTHO05D005847 1.2e-82 310.8 255 63.9
EL10Ac5g10876 Beta vulgaris HOM05D004983 ORTHO05D005847 1.2e-82 310.8 234 66.2
Carub.0006s1121 Capsella rubella HOM05D004983 ORTHO05D005847 2.6e-82 309.7 241 64.3
Dinv19894 Davidia involucrata HOM05D004983 ORTHO05D005847 4.5e-82 308.9 254 63.8
Migut.I00071 Erythranthe guttata HOM05D004983 ORTHO05D005847 4.5e-82 308.9 274 60.9
Solyc03g113590.3 Solanum lycopersicum HOM05D004983 ORTHO05D005847 1.7e-81 307.0 233 66.1
QL03p067725 Quercus lobata HOM05D004983 ORTHO05D005847 2.2e-81 306.6 250 59.6
Sopen03g032630 Solanum pennellii HOM05D004983 ORTHO05D005847 2.2e-81 306.6 233 65.7
SGA_v2.0_scaffold25G10860 Striga asiatica HOM05D004983 ORTHO05D005847 2.9e-81 306.2 247 64.4
Ah.02g112940 Amaranthus hybridus HOM05D004983 ORTHO05D005847 4.9e-81 305.4 258 62.4
PSO591G0429 Papaver somniferum HOM05D004983 ORTHO05D005847 4.9e-81 305.4 231 68.0
QL03p067716 Quercus lobata HOM05D004983 ORTHO05D005847 4.9e-81 305.4 249 59.8
CSS0013980 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 1.4e-80 303.9 243 61.7
Sp6g30930 Schrenkiella parvula HOM05D004983 ORTHO05D005847 1.4e-80 303.9 239 63.6
Rhsim08G0163200 Rhododendron simsii HOM05D004983 ORTHO05D005847 3.2e-80 302.8 309 53.1
CAN.G999.9 Capsicum annuum HOM05D004983 ORTHO05D005847 2.1e-79 300.1 230 64.8
ECA247G1770 Erigeron canadensis HOM05D004983 ORTHO05D005847 6.0e-79 298.5 333 52.3
DCAR_016523 Daucus carota HOM05D004983 ORTHO05D005847 1.3e-78 297.4 269 59.1
PGSC0003DMG400024570 Solanum tuberosum HOM05D004983 ORTHO05D005847 2.3e-78 296.6 222 65.8
Ah.02g112900 Amaranthus hybridus HOM05D004983 ORTHO05D005847 1.5e-77 293.9 241 62.7
TWI75G1117 Tripterygium wilfordii HOM05D004983 ORTHO05D005847 2.5e-77 293.1 252 59.9
Gohir.D12G050100 Gossypium hirsutum HOM05D004983 ORTHO05D005847 3.3e-77 292.7 259 59.1
Gorai.008G053300 Gossypium raimondii HOM05D004983 ORTHO05D005847 5.7e-77 292.0 280 55.4
CDE07G0592 Ceratophyllum demersum HOM05D004983 ORTHO05D005847 9.7e-77 291.2 229 64.6
Ciclev10032272m.g Citrus clementina HOM05D004983 ORTHO05D005847 1.3e-76 290.8 256 58.2
Os07g0578600 Oryza sativa ssp. japonica HOM05D004983 ORTHO05D005847 2.8e-76 289.7 223 63.7
ATR0665G657 Amborella trichopoda HOM05D004983 ORTHO05D005847 3.7e-76 289.3 229 65.5
Prupe.1G263300 Prunus persica HOM05D004983 ORTHO05D005847 4.8e-76 288.9 263 56.7
Haze_12108 Corylus avellana HOM05D004983 ORTHO05D005847 6.3e-76 288.5 235 59.1
Gohir.A12G051800 Gossypium hirsutum HOM05D004983 ORTHO05D005847 8.2e-76 288.1 240 61.7
Thecc.02G237100 Theobroma cacao HOM05D004983 ORTHO05D005847 1.1e-75 287.7 223 63.7
Ah.11g048970 Amaranthus hybridus HOM05D004983 ORTHO05D005847 4.1e-75 285.8 260 59.6
Peaxi162Scf00017g02122 Petunia axillaris HOM05D004983 ORTHO05D005847 6.9e-75 285.0 233 61.8
Zm00001eb107660 Zea mays HOM05D004983 ORTHO05D005847 9.0e-75 284.6 222 64.0
Gorai.011G210300 Gossypium raimondii HOM05D004983 ORTHO05D005847 1.5e-74 283.9 241 63.5
CiPaw.05G143400 Carya illinoinensis HOM05D004983 ORTHO05D005847 2.6e-74 283.1 228 60.5
FvH4_4g35410 Fragaria vesca HOM05D004983 ORTHO05D005847 6.5e-73 278.5 261 55.2
RcHm_v2.0_Chr4g0445021 Rosa chinensis HOM05D004983 ORTHO05D005847 3.2e-72 276.2 260 55.0
HPP92_026476 Vanilla planifolia HOM05D004983 ORTHO05D005847 9.4e-72 274.6 245 58.0
HPP92_014218 Vanilla planifolia HOM05D004983 ORTHO05D005847 4.6e-71 272.3 234 59.4
arahy.Tifrunner.gnm1.ann1.G2IRY3 Arachis hypogaea HOM05D004983 ORTHO05D005847 7.9e-71 271.6 254 56.7
MELO3C017137.2 Cucumis melo HOM05D004983 ORTHO05D005847 1.4e-70 270.8 252 58.7
FAN07G1154 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.8e-70 270.4 288 51.4
unitig_27.g25109 Utricularia gibba HOM05D000870 ORTHO05D005847 2.3e-70 270.0 201 68.2
arahy.Tifrunner.gnm1.ann1.N4VW2L Arachis hypogaea HOM05D004983 ORTHO05D005847 5.1e-70 268.9 264 53.4
Peaxi162Scf00496g00013 Petunia axillaris HOM05D004983 ORTHO05D005847 6.7e-70 268.5 214 65.4
Atru.chr11.1914 Acer truncatum HOM05D004983 ORTHO05D005847 1.5e-69 267.3 239 58.6
BcaNung01178 Brassica carinata HOM05D004983 ORTHO05D005847 3.3e-69 266.2 273 54.6
AUR62021779 Chenopodium quinoa HOM05D004983 ORTHO05D005847 5.7e-69 265.4 197 69.0
Psat5g181720 Pisum sativum HOM05D004983 ORTHO05D005847 1.2e-66 257.7 146 83.6
Sed0011699 Sechium edule HOM05D004983 ORTHO05D005847 3.0e-62 243.0 190 65.8
FAN22G0524 Fragaria x ananassa HOM05D004983 ORTHO05D005847 3.9e-62 242.7 262 50.8
FAN12G3769 Fragaria x ananassa HOM05D004983 ORTHO05D005847 5.1e-62 242.3 300 46.7
AagrBONN_evm.TU.Sc2ySwM_362.273 Anthoceros agrestis HOM05D004983 ORTHO05D005847 3.3e-61 239.6 231 55.4
Duzib251G0645 Durio zibethinus HOM05D004983 ORTHO05D005847 3.7e-60 236.1 180 63.3
Nn4g24106 Nelumbo nucifera HOM05D004983 ORTHO05D005847 2.4e-59 233.4 241 54.8
Cpa.g.sc203.7 Carica papaya HOM05D004983 ORTHO05D005847 5.3e-59 232.3 223 56.1
Gohir.A10G180700 Gossypium hirsutum HOM05D004983 ORTHO05D005847 7.0e-59 231.9 148 77.0
SMO271G0141 Selaginella moellendorffii HOM05D004983 ORTHO05D005847 1.2e-58 231.1 224 53.6
MD16G1082800 Malus domestica HOM05D004983 ORTHO05D005847 1.7e-57 227.3 249 51.0
Lj9A456T34 Lonicera japonica HOM05D004983 ORTHO05D005847 2.2e-57 226.9 141 78.7
CSS0025366 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 4.2e-56 222.6 143 77.6
Nitab4.5_0002376g0010 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.8e-54 217.2 268 45.1
SalBow5G1630 Salvia bowleyana HOM05D004983 ORTHO05D005847 3.0e-54 216.5 242 52.1
Mapoly0019s0150 Marchantia polymorpha HOM05D004983 ORTHO05D005847 2.6e-53 213.4 226 48.7
Dinv31146 Davidia involucrata HOM05D004983 ORTHO05D005847 4.8e-52 209.1 142 70.4
Nitab4.5_0000642g0190 Nicotiana tabacum HOM05D004983 ORTHO05D005847 2.9e-49 199.9 222 51.4
Atru.chr11.1910 Acer truncatum HOM05D004983 ORTHO05D005847 6.1e-47 192.2 144 65.3
Nitab4.5_0000710g0080 Nicotiana tabacum HOM05D004983 ORTHO05D005847 4.8e-44 182.6 162 56.2
CBR_g34194 Chara braunii HOM05D004983 ORTHO05D005847 1.1e-43 181.4 220 44.1
Nitab4.5_0009486g0020 Nicotiana tabacum HOM05D004983 ORTHO05D005847 2.2e-41 173.7 158 57.6
Pp3c3_32060 Physcomitrium patens HOM05D004983 ORTHO05D005847 3.8e-41 172.9 170 50.6
Pp3c12_22470 Physcomitrium patens HOM05D004983 ORTHO05D005847 9.4e-40 168.3 166 52.4
SEGI_36548 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 1.2e-39 167.9 147 59.2
Hma1.2p1_4120F.1_g338320 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 2.4e-35 153.7 96 77.1
GSVIVG01020126001 Vitis vinifera HOM05D004983 ORTHO05D005847 5.5e-32 142.5 124 56.5
Cre09.g403293 Chlamydomonas reinhardtii HOM05D004983 ORTHO05D005847 1.5e-29 134.4 211 37.9
SEGI_02343 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 7.5e-29 132.1 96 67.7
MCO01G728 Micromonas commoda HOM05D004983 ORTHO05D005847 5.9e-26 122.5 238 36.1
Psat0s864g0040 Pisum sativum HOM05D004983 ORTHO05D005847 1.9e-24 117.5 85 72.9
ClCG06G016570 Citrullus lanatus HOM05D004983 ORTHO05D005847 2.5e-24 117.1 104 57.7
FAN17G3002 Fragaria x ananassa HOM05D004983 ORTHO05D005847 2.5e-24 117.1 144 46.5
PRCOL_00002663 Prasinoderma coloniale HOM05D004983 ORTHO05D005847 5.6e-24 115.9 234 34.2
Atru.chr11.1911 Acer truncatum HOM05D004983 ORTHO05D005847 1.5e-21 107.8 111 52.3
Nitab4.5_0000710g0100 Nicotiana tabacum HOM05D004983 ORTHO05D005847 4.1e-11 73.2 59 57.6
Cfa021669 Carpinus fangiana HOM05D004983 ORTHO05D005847 4.3e-08 63.2 170 28.2
Hund25310 Selenicereus undatus HOM05D004983 ORTHO05D005847 1.1e-06 58.5 162 32.1
Ca_28882_v3 Cicer arietinum L. HOM05D004983 ORTHO05D005847 5.2e-06 56.2 207 25.1


User provided reference genes

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