Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.GCV40F Arachis hypogaea HOM05D003856 ORTHO05D004547 4.7e-289 997.3 548 100.0
arahy.Tifrunner.gnm1.ann1.D1JSNC Arachis hypogaea HOM05D003856 ORTHO05D004547 1.6e-175 620.2 463 78.0
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 1.2e-143 514.2 333 83.8
arahy.Tifrunner.gnm1.ann1.ZZ9Q5Y Arachis hypogaea HOM05D003856 ORTHO05D004547 4.6e-135 485.7 247 98.8
Glyma.18G075400 Glycine max HOM05D003856 ORTHO05D004547 2.4e-131 473.4 247 96.0
Lj5g0025471 Lotus japonicus HOM05D003856 ORTHO05D004547 4.0e-131 472.6 247 95.1
VMungo0540G0895 Vigna mungo HOM05D003856 ORTHO05D004547 9.0e-131 471.5 247 95.5
Glyma.08G331200 Glycine max HOM05D003856 ORTHO05D004547 1.2e-130 471.1 247 95.1
Lalb_Chr06g0168331 Lupinus albus HOM05D003856 ORTHO05D004547 1.2e-130 471.1 247 95.5
Lalb_Chr02g0149201 Lupinus albus HOM05D003856 ORTHO05D004547 2.6e-130 469.9 247 95.1
Ca_10008_v3 Cicer arietinum L. HOM05D003856 ORTHO05D004547 3.4e-130 469.5 248 95.6
Phvul.006G059000 Phaseolus vulgaris HOM05D003856 ORTHO05D004547 3.4e-130 469.5 247 95.5
Psat6g143120 Pisum sativum HOM05D003856 ORTHO05D004547 3.5e-127 459.5 248 93.1
Medtr1g079890 Medicago truncatula HOM05D003856 ORTHO05D004547 8.7e-126 454.9 248 91.9
Hma1.2p1_0657F.1_g197110 Hydrangea macrophylla HOM05D003856 ORTHO05D004547 1.3e-124 451.1 247 90.7
Actinidia02310 Actinidia chinensis HOM05D003856 ORTHO05D004547 1.6e-124 450.7 247 91.1
TPR.G32278 Trifolium pratense HOM05D003856 ORTHO05D004547 2.1e-124 450.3 248 91.5
Migut.M01400 Erythranthe guttata HOM05D003856 ORTHO05D004547 3.7e-124 449.5 247 90.7
Manes.08G069500 Manihot esculenta HOM05D003856 ORTHO05D004547 6.2e-124 448.7 247 90.7
Dinv07408 Davidia involucrata HOM05D003856 ORTHO05D004547 1.4e-123 447.6 246 89.8
TAR626G0303 Trochodendron aralioides HOM05D003856 ORTHO05D004547 1.4e-123 447.6 247 90.3
Aqoxy1G04060 Aquilegia oxysepala HOM05D003856 ORTHO05D004547 1.8e-123 447.2 247 90.3
CANSAT56G3590 Cannabis sativa HOM05D003856 ORTHO05D004547 1.8e-123 447.2 247 90.3
Lj2A261T38 Lonicera japonica HOM05D003856 ORTHO05D004547 1.8e-123 447.2 247 90.3
Potri.016G013100 Populus trichocarpa HOM05D003856 ORTHO05D004547 2.4e-123 446.8 247 89.1
Nitab4.5_0004406g0030 Nicotiana tabacum HOM05D003856 ORTHO05D004547 4.0e-123 446.0 247 89.5
RcHm_v2.0_Chr5g0001451 Rosa chinensis HOM05D003856 ORTHO05D004547 4.0e-123 446.0 247 89.9
MBI16_g31714_MAGBIO Magnolia biondii HOM05D003856 ORTHO05D004547 5.3e-123 445.7 247 89.9
THA.LOC104812995 Tarenaya hassleriana HOM05D003856 ORTHO05D004547 5.3e-123 445.7 247 89.5
Cc09_g00840 Coffea canephora HOM05D003856 ORTHO05D004547 6.9e-123 445.3 248 90.7
PGR004G0563 Punica granatum HOM05D003856 ORTHO05D004547 1.2e-122 444.5 247 89.1
TAR627G0499 Trochodendron aralioides HOM05D003856 ORTHO05D004547 1.2e-122 444.5 247 89.1
TAR627G1166 Trochodendron aralioides HOM05D003856 ORTHO05D004547 1.2e-122 444.5 247 89.1
Actinidia26855 Actinidia chinensis HOM05D003856 ORTHO05D004547 1.5e-122 444.1 247 89.9
FAN25G1896 Fragaria x ananassa HOM05D003856 ORTHO05D004547 1.5e-122 444.1 247 89.1
Gohir.D10G008700 Gossypium hirsutum HOM05D003856 ORTHO05D004547 2.0e-122 443.7 247 89.5
Gorai.011G009500 Gossypium raimondii HOM05D003856 ORTHO05D004547 2.0e-122 443.7 247 89.5
CiPaw.09G102800 Carya illinoinensis HOM05D003856 ORTHO05D004547 2.6e-122 443.4 247 89.1
CsaV3_1G017260 Cucumis sativus L. HOM05D003856 ORTHO05D004547 2.6e-122 443.4 247 88.7
Duzib192G0794 Durio zibethinus HOM05D003856 ORTHO05D004547 2.6e-122 443.4 247 89.1
ECA248G1273 Erigeron canadensis HOM05D003856 ORTHO05D004547 2.6e-122 443.4 247 89.1
FvH4_3g00930 Fragaria vesca HOM05D003856 ORTHO05D004547 2.6e-122 443.4 245 89.4
Sc17g0007760 Simmondsia chinensis HOM05D003856 ORTHO05D004547 3.4e-122 443.0 247 88.7
Aa31LG9G10060 Aethionema arabicum HOM05D003856 ORTHO05D004547 4.5e-122 442.6 247 87.4
ClCG01G010160 Citrullus lanatus HOM05D003856 ORTHO05D004547 4.5e-122 442.6 247 88.3
QL05p069616 Quercus lobata HOM05D003856 ORTHO05D004547 4.5e-122 442.6 246 88.6
SalBow8G1854 Salvia bowleyana HOM05D003856 ORTHO05D004547 4.5e-122 442.6 245 88.6
Thecc.06G233900 Theobroma cacao HOM05D003856 ORTHO05D004547 4.5e-122 442.6 247 89.1
BcaB03g11729 Brassica carinata HOM05D003856 ORTHO05D004547 5.8e-122 442.2 247 89.1
Duzib235G1167 Durio zibethinus HOM05D003856 ORTHO05D004547 5.8e-122 442.2 247 89.1
Lsat_1_v5_gn_4_61900 Lactuca sativa HOM05D003856 ORTHO05D004547 5.8e-122 442.2 247 88.3
DCAR_004889 Daucus carota HOM05D003856 ORTHO05D004547 7.6e-122 441.8 245 91.4
Gohir.A10G009000 Gossypium hirsutum HOM05D003856 ORTHO05D004547 7.6e-122 441.8 247 89.1
Gohir.D10G008800 Gossypium hirsutum HOM05D003856 ORTHO05D004547 7.6e-122 441.8 247 88.7
Gorai.011G009600 Gossypium raimondii HOM05D003856 ORTHO05D004547 7.6e-122 441.8 247 88.7
Potri.006G011500 Populus trichocarpa HOM05D003856 ORTHO05D004547 7.6e-122 441.8 247 87.4
HanXRQChr01g0006771 Helianthus annuus HOM05D003856 ORTHO05D004547 1.0e-121 441.4 243 90.1
C01p16660 Brassica napus HOM05D003856 ORTHO05D004547 1.3e-121 441.0 247 88.7
Cpa.g.sc75.112 Carica papaya HOM05D003856 ORTHO05D004547 1.3e-121 441.0 247 89.1
Cfa010272 Carpinus fangiana HOM05D003856 ORTHO05D004547 1.7e-121 440.7 247 88.7
CiPaw.10G078300 Carya illinoinensis HOM05D003856 ORTHO05D004547 1.7e-121 440.7 247 88.7
Haze_06930 Corylus avellana HOM05D003856 ORTHO05D004547 1.7e-121 440.7 247 88.7
Gohir.A10G009100 Gossypium hirsutum HOM05D003856 ORTHO05D004547 1.7e-121 440.7 247 88.3
Hund06997 Selenicereus undatus HOM05D003856 ORTHO05D004547 1.7e-121 440.7 247 88.7
BcaC01g00774 Brassica carinata HOM05D003856 ORTHO05D004547 2.9e-121 439.9 247 88.7
A08p15680 Brassica napus HOM05D003856 ORTHO05D004547 2.9e-121 439.9 247 88.7
BolC1t01613H Brassica oleracea HOM05D003856 ORTHO05D004547 2.9e-121 439.9 247 88.7
CAN.G449.18 Capsicum annuum HOM05D003856 ORTHO05D004547 2.9e-121 439.9 248 89.5
CSS0032798 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 3.8e-121 439.5 247 89.1
Ciclev10016420m.g Citrus clementina HOM05D003856 ORTHO05D004547 3.8e-121 439.5 247 88.3
MD05G1358200 Malus domestica HOM05D003856 ORTHO05D004547 3.8e-121 439.5 244 89.3
Sed0028227 Sechium edule HOM05D003856 ORTHO05D004547 3.8e-121 439.5 247 88.3
THA.LOC104813601 Tarenaya hassleriana HOM05D003856 ORTHO05D004547 4.9e-121 439.1 247 88.3
C03p84130 Brassica napus HOM05D003856 ORTHO05D004547 6.5e-121 438.7 247 88.3
BolC3t20692H Brassica oleracea HOM05D003856 ORTHO05D004547 6.5e-121 438.7 247 88.3
A01p13750 Brassica napus HOM05D003856 ORTHO05D004547 8.4e-121 438.3 247 88.3
A09p26760 Brassica napus HOM05D003856 ORTHO05D004547 8.4e-121 438.3 247 87.4
C09p33910 Brassica napus HOM05D003856 ORTHO05D004547 8.4e-121 438.3 247 87.4
BolC9t56227H Brassica oleracea HOM05D003856 ORTHO05D004547 8.4e-121 438.3 247 87.4
BraA01t01320Z Brassica rapa HOM05D003856 ORTHO05D004547 8.4e-121 438.3 247 88.3
BraA08t33548Z Brassica rapa HOM05D003856 ORTHO05D004547 8.4e-121 438.3 247 88.3
BraA09t38248Z Brassica rapa HOM05D003856 ORTHO05D004547 8.4e-121 438.3 247 87.4
Sopen05g032590 Solanum pennellii HOM05D003856 ORTHO05D004547 8.4e-121 438.3 248 89.1
PGSC0003DMG400008443 Solanum tuberosum HOM05D003856 ORTHO05D004547 8.4e-121 438.3 248 89.1
FAN21G0260 Fragaria x ananassa HOM05D003856 ORTHO05D004547 1.1e-120 438.0 252 87.3
MD10G1332300 Malus domestica HOM05D003856 ORTHO05D004547 1.1e-120 438.0 244 88.9
SalBow1G0666 Salvia bowleyana HOM05D003856 ORTHO05D004547 1.1e-120 438.0 245 88.2
TWI38G2230 Tripterygium wilfordii HOM05D003856 ORTHO05D004547 1.1e-120 438.0 248 88.7
Atru.chr1.2436 Acer truncatum HOM05D003856 ORTHO05D004547 1.4e-120 437.6 248 88.7
Atru.chr1.2438 Acer truncatum HOM05D003856 ORTHO05D004547 1.4e-120 437.6 248 88.7
HanXRQChr10g0285161 Helianthus annuus HOM05D003856 ORTHO05D004547 1.4e-120 437.6 243 88.5
Nn1g07399 Nelumbo nucifera HOM05D003856 ORTHO05D004547 1.4e-120 437.6 247 87.9
Sed0026067 Sechium edule HOM05D003856 ORTHO05D004547 1.4e-120 437.6 247 87.4
SGA_v2.0_scaffold4G01871 Striga asiatica HOM05D003856 ORTHO05D004547 1.4e-120 437.6 244 88.5
AL7G31210 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 1.9e-120 437.2 247 87.4
AT4G12590 Arabidopsis thaliana HOM05D003856 ORTHO05D004547 2.5e-120 436.8 247 87.0
Thhalv10026090m.g Eutrema salsugineum HOM05D003856 ORTHO05D004547 2.5e-120 436.8 247 87.9
BcaC04g21245 Brassica carinata HOM05D003856 ORTHO05D004547 3.2e-120 436.4 247 87.0
Lsat_1_v5_gn_0_29081 Lactuca sativa HOM05D003856 ORTHO05D004547 3.2e-120 436.4 243 89.3
Solyc05g054100.3 Solanum lycopersicum HOM05D003856 ORTHO05D004547 3.2e-120 436.4 256 87.1
Prupe.4G009900 Prunus persica HOM05D003856 ORTHO05D004547 5.5e-120 435.6 244 88.5
AL6G47550 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 7.1e-120 435.3 247 86.6
CDE04G3203 Ceratophyllum demersum HOM05D003856 ORTHO05D004547 9.3e-120 434.9 247 87.0
CDE06G2351 Ceratophyllum demersum HOM05D003856 ORTHO05D004547 9.3e-120 434.9 247 86.6
Ah.14g087610 Amaranthus hybridus HOM05D003856 ORTHO05D004547 1.2e-119 434.5 245 87.8
Sp7g20520 Schrenkiella parvula HOM05D003856 ORTHO05D004547 1.2e-119 434.5 247 87.4
Rhsim02G0099500 Rhododendron simsii HOM05D003856 ORTHO05D004547 1.6e-119 434.1 270 83.0
Carub.0006s3186 Capsella rubella HOM05D003856 ORTHO05D004547 3.5e-119 433.0 247 86.2
Eucgr.D01412 Eucalyptus grandis HOM05D003856 ORTHO05D004547 3.5e-119 433.0 247 86.2
BcaB01g01755 Brassica carinata HOM05D003856 ORTHO05D004547 1.0e-118 431.4 247 85.8
BcaC09g51102 Brassica carinata HOM05D003856 ORTHO05D004547 1.0e-118 431.4 248 87.5
MSTRG.7166 Avicennia marina HOM05D003856 ORTHO05D004547 3.0e-118 429.9 247 86.2
CARHR229320 Cardamine hirsuta HOM05D003856 ORTHO05D004547 3.0e-118 429.9 248 86.7
CARHR253580 Cardamine hirsuta HOM05D003856 ORTHO05D004547 6.7e-118 428.7 247 86.2
EL10Ac8g20193 Beta vulgaris HOM05D003856 ORTHO05D004547 8.7e-118 428.3 244 87.7
Thhalv10028913m.g Eutrema salsugineum HOM05D003856 ORTHO05D004547 2.5e-117 426.8 247 85.0
DCAR_027821 Daucus carota HOM05D003856 ORTHO05D004547 7.4e-117 425.2 286 78.7
Nitab4.5_0001735g0170 Nicotiana tabacum HOM05D003856 ORTHO05D004547 1.3e-116 424.5 248 87.5
Sp6g04920 Schrenkiella parvula HOM05D003856 ORTHO05D004547 2.8e-116 423.3 247 83.8
PSO541G3298 Papaver somniferum HOM05D003856 ORTHO05D004547 1.4e-115 421.0 246 86.2
Nn1g03306 Nelumbo nucifera HOM05D003856 ORTHO05D004547 4.1e-115 419.5 235 88.1
PSO675G7111 Papaver somniferum HOM05D003856 ORTHO05D004547 4.1e-115 419.5 246 85.8
Oeu009395.1 Olea europaea HOM05D003856 ORTHO05D004547 3.4e-114 416.4 306 70.9
unitig_61.g26092 Utricularia gibba HOM05D003856 ORTHO05D004547 5.9e-114 415.6 261 80.1
TWI63G1684 Tripterygium wilfordii HOM05D003856 ORTHO05D004547 1.0e-113 414.8 290 75.2
Peaxi162Scf00990g00017 Petunia axillaris HOM05D003856 ORTHO05D004547 8.4e-113 411.8 247 84.6
Sabra06G0009100 Salix brachista HOM05D003856 ORTHO05D004547 6.7e-110 402.1 334 65.6
Mapoly0029s0061 Marchantia polymorpha HOM05D003856 ORTHO05D004547 8.7e-110 401.7 252 79.0
Zm00001eb102120 Zea mays HOM05D003856 ORTHO05D004547 1.9e-109 400.6 249 81.5
Os09g0497400 Oryza sativa ssp. japonica HOM05D003856 ORTHO05D004547 2.2e-108 397.1 249 80.3
Pp3c11_24600 Physcomitrium patens HOM05D003856 ORTHO05D004547 1.4e-107 394.4 251 79.3
AagrBONN_evm.TU.Sc2ySwM_362.305 Anthoceros agrestis HOM05D003856 ORTHO05D004547 2.4e-107 393.7 245 80.4
Sabra16G0002300 Salix brachista HOM05D003856 ORTHO05D004547 9.0e-107 391.7 216 89.4
Pp3c7_950 Physcomitrium patens HOM05D003856 ORTHO05D004547 1.3e-105 387.9 259 74.5
SMO239G0047 Selaginella moellendorffii HOM05D003856 ORTHO05D004547 1.7e-105 387.5 251 77.3
Haze_06937 Corylus avellana HOM05D003856 ORTHO05D004547 1.4e-104 384.4 266 76.3
GSVIVG01003331001 Vitis vinifera HOM05D003856 ORTHO05D004547 4.6e-103 379.4 211 87.7
GSVIVG01003337001 Vitis vinifera HOM05D003856 ORTHO05D004547 4.6e-103 379.4 211 87.7
ATR0712G091 Amborella trichopoda HOM05D003856 ORTHO05D004547 3.9e-102 376.3 212 87.3
vmacro15762 Vaccinium macrocarpon HOM05D003856 ORTHO05D004547 7.4e-101 372.1 359 59.6
SHI24455 Sapria himalayana HOM05D003856 ORTHO05D004547 5.7e-93 345.9 245 73.1
Lj1C1240G8 Lonicera japonica HOM05D003856 ORTHO05D004547 2.2e-89 334.0 198 87.9
Gorai.013G129800 Gossypium raimondii HOM05D003856 ORTHO05D004547 5.7e-85 319.3 247 69.6
Nitab4.5_0003626g0020 Nicotiana tabacum HOM05D003856 ORTHO05D004547 5.7e-85 319.3 245 69.8
Lalb_Chr21g0311231 Lupinus albus HOM05D003856 ORTHO05D004547 2.4e-83 313.9 166 91.6
MELO3C021687.2 Cucumis melo HOM05D003856 ORTHO05D004547 5.0e-81 306.2 179 86.6
AUR62021855 Chenopodium quinoa HOM05D003856 ORTHO05D004547 1.8e-78 297.7 172 88.4
CSS0048239 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 5.2e-78 296.2 165 88.5
AUR62012797 Chenopodium quinoa HOM05D003856 ORTHO05D004547 8.8e-78 295.4 172 87.8
HPP92_000415 Vanilla planifolia HOM05D003856 ORTHO05D004547 2.7e-71 273.9 280 54.3
MCO07G661 Micromonas commoda HOM05D003856 ORTHO05D004547 2.1e-63 247.7 242 49.6
SEGI_40422 Sequoiadendron giganteum HOM05D003856 ORTHO05D004547 3.9e-57 226.9 138 81.9
Haze_26609 Corylus avellana HOM05D003856 ORTHO05D004547 3.3e-48 197.2 232 43.5
Cre09.g400400 Chlamydomonas reinhardtii HOM05D003856 ORTHO05D004547 3.6e-47 193.7 247 44.5
Gorai.012G047500 Gossypium raimondii HOM05D003856 ORTHO05D004547 5.2e-46 189.9 247 49.4
MD10G1332200 Malus domestica HOM05D003856 ORTHO05D004547 4.9e-44 183.3 102 86.3
Carub.0007s1888 Capsella rubella HOM05D003856 ORTHO05D004547 6.0e-42 176.4 206 53.9
SEGI_31097 Sequoiadendron giganteum HOM05D003856 ORTHO05D004547 2.1e-39 167.9 97 84.5
CSS0021523 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 5.4e-35 153.3 165 54.5
Lalb_Chr21g0311241 Lupinus albus HOM05D003856 ORTHO05D004547 2.5e-32 144.4 82 89.0
COL.COLO4_31891 Corchorus olitorius HOM05D003856 ORTHO05D004547 2.2e-28 131.3 141 52.5
C01p16690 Brassica napus HOM05D003856 ORTHO05D004547 3.2e-27 127.5 84 75.0
CARHR290760 Cardamine hirsuta HOM05D003856 ORTHO05D004547 7.8e-26 122.9 87 71.3
AL649U10020 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 1.0e-25 122.5 82 76.8
Carub.0008s0836 Capsella rubella HOM05D003856 ORTHO05D004547 3.0e-25 120.9 215 43.3
PRCOL_00006309 Prasinoderma coloniale HOM05D003856 ORTHO05D004547 8.7e-25 119.4 232 36.2
CBR_g38137 Chara braunii HOM05D003856 ORTHO05D004547 5.4e-19 100.1 99 48.5
COL.COLO4_31890 Corchorus olitorius HOM05D003856 ORTHO05D004547 1.1e-16 92.4 57 84.2
Migut.L00276 Erythranthe guttata HOM05D003856 ORTHO05D004547 7.4e-16 89.7 53 81.1
HPP92_000455 Vanilla planifolia HOM05D003856 ORTHO05D004547 1.1e-14 85.9 51 86.3
vmacro04321 Vaccinium macrocarpon HOM05D004428 ORTHO05D013648 9.0e-14 82.8 76 61.8
Oeu040759.1 Olea europaea HOM05D003856 ORTHO05D004547 1.2e-13 82.4 52 86.5
Hund21152 Selenicereus undatus HOM05D003856 ORTHO05D004547 1.5e-13 82.0 47 76.6
Dinv13969 Davidia involucrata HOM05D003856 ORTHO05D004547 6.4e-12 76.6 79 55.7
Ah.14g078790 Amaranthus hybridus HOM05D006286 ORTHO05D007741 1.6e-10 72.0 38 86.8
vmacro16921 Vaccinium macrocarpon HOM05D000007 ORTHO05D013648 1.6e-10 72.0 106 46.2
Rhsim07G0218800 Rhododendron simsii HOM05D003856 ORTHO05D013648 2.1e-10 71.6 94 50.0
FAN07G2353 Fragaria x ananassa HOM05D003856 ORTHO05D004547 6.7e-09 66.6 44 79.5
Rhsim07G0218900 Rhododendron simsii HOM05D003856 ORTHO05D013648 8.1e-07 59.7 90 47.8


User provided reference genes

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