Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.GC569L Arachis hypogaea HOM05D006086 ORTHO05D007396 6.7e-30 133.3 63 100.0
arahy.Tifrunner.gnm1.ann1.I5363L Arachis hypogaea HOM05D006086 ORTHO05D007396 6.7e-30 133.3 63 100.0
Glyma.20G145600 Glycine max HOM05D006086 ORTHO05D007396 1.2e-26 122.5 63 92.1
Glyma.10G248500 Glycine max HOM05D006086 ORTHO05D007396 2.6e-26 121.3 63 90.5
Phvul.007G056800 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 1.0e-25 119.4 62 88.7
Lj5g0007110 Lotus japonicus HOM05D006086 ORTHO05D007396 1.7e-25 118.6 61 90.2
Potri.008G152200 Populus trichocarpa HOM05D006086 ORTHO05D007396 2.9e-25 117.9 61 90.2
Medtr1g104520 Medicago truncatula HOM05D006086 ORTHO05D007396 3.8e-25 117.5 63 85.7
Thecc.04G230800 Theobroma cacao HOM05D006086 ORTHO05D007396 3.8e-25 117.5 63 87.3
Potri.010G088200 Populus trichocarpa HOM05D006086 ORTHO05D007396 4.9e-25 117.1 63 87.3
Manes.15G028500 Manihot esculenta HOM05D006086 ORTHO05D007396 1.1e-24 115.9 63 85.7
GSVIVG01017965001 Vitis vinifera HOM05D006086 ORTHO05D007396 1.4e-24 115.5 63 87.3
Nn4g26304 Nelumbo nucifera HOM05D006086 ORTHO05D007396 3.2e-24 114.4 62 85.5
Glyma.01G238500 Glycine max HOM05D006086 ORTHO05D007396 4.2e-24 114.0 63 84.1
Medtr5g006200 Medicago truncatula HOM05D006086 ORTHO05D007396 5.5e-24 113.6 60 86.7
Lalb_Chr05g0210971 Lupinus albus HOM05D006086 ORTHO05D007396 7.1e-24 113.2 63 85.7
CiPaw.01G165300 Carya illinoinensis HOM05D006086 ORTHO05D007396 1.2e-23 112.5 61 85.2
arahy.Tifrunner.gnm1.ann1.K13GF2 Arachis hypogaea HOM05D006086 ORTHO05D007396 1.6e-23 112.1 64 85.9
Atru.ctg752_3.89 Acer truncatum HOM05D006086 ORTHO05D007396 2.1e-23 111.7 72 76.4
Cc03_g03710 Coffea canephora HOM05D006086 ORTHO05D007396 2.1e-23 111.7 62 82.3
Lalb_Chr23g0273411 Lupinus albus HOM05D006086 ORTHO05D007396 3.5e-23 110.9 59 88.1
Phvul.002G045900 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 3.5e-23 110.9 63 85.7
arahy.Tifrunner.gnm1.ann1.NA8V5S Arachis hypogaea HOM05D006086 ORTHO05D007396 1.0e-22 109.4 64 84.4
GSVIVG01021842001 Vitis vinifera HOM05D006086 ORTHO05D007396 1.8e-22 108.6 63 79.4
RcHm_v2.0_Chr4g0416351 Rosa chinensis HOM05D006086 ORTHO05D007396 2.3e-22 108.2 59 84.7
A05p26350 Brassica napus HOM05D006086 ORTHO05D007396 5.1e-22 107.1 63 79.4
BraA05t21510Z Brassica rapa HOM05D006086 ORTHO05D007396 5.1e-22 107.1 63 79.4
DCAR_030633 Daucus carota HOM05D006086 ORTHO05D007396 5.1e-22 107.1 63 79.4
FvH4_4g15440 Fragaria vesca HOM05D006086 ORTHO05D007396 5.1e-22 107.1 59 83.1
FAN12G3621 Fragaria x ananassa HOM05D006086 ORTHO05D007396 5.1e-22 107.1 59 83.1
FAN17G2927 Fragaria x ananassa HOM05D006086 ORTHO05D007396 5.1e-22 107.1 59 83.1
FAN22G1306 Fragaria x ananassa HOM05D006086 ORTHO05D007396 5.1e-22 107.1 59 83.1
CsaV3_3G013360 Cucumis sativus L. HOM05D006086 ORTHO05D007396 6.7e-22 106.7 63 82.5
Glyma.11G005000 Glycine max HOM05D006086 ORTHO05D007396 8.7e-22 106.3 57 84.2
Oeu023395.1 Olea europaea HOM05D006086 ORTHO05D007396 8.7e-22 106.3 63 81.0
Prupe.1G012900 Prunus persica HOM05D006086 ORTHO05D007396 8.7e-22 106.3 62 82.3
CSS0045022 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 1.1e-21 105.9 63 81.0
Migut.G00335 Erythranthe guttata HOM05D006086 ORTHO05D007396 1.5e-21 105.5 64 79.7
Solyc09g075980.3 Solanum lycopersicum HOM05D006086 ORTHO05D007396 2.5e-21 104.8 63 81.0
PGSC0003DMG400030088 Solanum tuberosum HOM05D006086 ORTHO05D007396 2.5e-21 104.8 63 81.0
Oeu011629.1 Olea europaea HOM05D006086 ORTHO05D007396 3.3e-21 104.4 63 79.4
SalBow2G3603 Salvia bowleyana HOM05D006086 ORTHO05D007396 3.3e-21 104.4 61 83.6
Sed0006679 Sechium edule HOM05D006086 ORTHO05D007396 3.3e-21 104.4 63 81.0
Oeu031234.1 Olea europaea HOM05D006086 ORTHO05D007396 4.3e-21 104.0 63 76.2
Carub.0003s2258 Capsella rubella HOM05D006086 ORTHO05D007396 5.7e-21 103.6 63 77.8
Gohir.A09G215300 Gossypium hirsutum HOM05D006086 ORTHO05D007396 7.4e-21 103.2 57 84.2
Gohir.D09G217800 Gossypium hirsutum HOM05D006086 ORTHO05D007396 7.4e-21 103.2 57 84.2
CAN.G907.3 Capsicum annuum HOM05D006086 ORTHO05D007396 9.6e-21 102.8 63 79.4
MD13G1192200 Malus domestica HOM05D006086 ORTHO05D007396 1.6e-20 102.1 65 75.4
Manes.03G179500 Manihot esculenta HOM05D006086 ORTHO05D007396 1.6e-20 102.1 63 79.4
Sed0021654 Sechium edule HOM05D006086 ORTHO05D007396 1.6e-20 102.1 62 82.3
Thecc.05G288200 Theobroma cacao HOM05D006086 ORTHO05D007396 1.6e-20 102.1 63 76.2
Gohir.A11G255000 Gossypium hirsutum HOM05D006086 ORTHO05D007396 2.1e-20 101.7 63 76.2
Gohir.D11G264700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 2.1e-20 101.7 63 76.2
Gorai.007G284800 Gossypium raimondii HOM05D006086 ORTHO05D007396 2.1e-20 101.7 63 76.2
Hma1.2p1_3079F.1_g332420 Hydrangea macrophylla HOM05D006086 ORTHO05D007396 2.1e-20 101.7 59 76.3
EL10Ac3g06420 Beta vulgaris HOM05D006086 ORTHO05D007396 2.8e-20 101.3 63 81.0
BolC3t17520H Brassica oleracea HOM05D006086 ORTHO05D007396 2.8e-20 101.3 63 74.6
A01p32670 Brassica napus HOM05D006086 ORTHO05D007396 3.7e-20 100.9 62 74.2
Nn1g02292 Nelumbo nucifera HOM05D006086 ORTHO05D007396 3.7e-20 100.9 61 78.7
Nitab4.5_0000043g0210 Nicotiana tabacum HOM05D006086 ORTHO05D007396 3.7e-20 100.9 63 79.4
Nitab4.5_0012971g0020 Nicotiana tabacum HOM05D006086 ORTHO05D007396 3.7e-20 100.9 63 79.4
AL3G36690 Arabidopsis lyrata HOM05D006086 ORTHO05D007396 4.8e-20 100.5 63 76.2
CSS0028415 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 4.8e-20 100.5 63 76.2
TAR633G0013 Trochodendron aralioides HOM05D006086 ORTHO05D007396 4.8e-20 100.5 63 76.2
TAR636G0808 Trochodendron aralioides HOM05D006086 ORTHO05D007396 4.8e-20 100.5 63 76.2
HPP92_015928 Vanilla planifolia HOM05D006086 ORTHO05D007396 4.8e-20 100.5 63 74.6
BraA01t03396Z Brassica rapa HOM05D006086 ORTHO05D007396 1.8e-19 98.6 62 72.6
Dinv44531 Davidia involucrata HOM05D006086 ORTHO05D007396 1.8e-19 98.6 59 79.7
Phvul.001G152800 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 1.8e-19 98.6 63 79.4
DCAR_027212 Daucus carota HOM05D006086 ORTHO05D007396 2.4e-19 98.2 59 76.3
Gorai.006G238700 Gossypium raimondii HOM05D006086 ORTHO05D007396 3.1e-19 97.8 57 82.5
Prupe.7G268200 Prunus persica HOM05D006086 ORTHO05D007396 4.1e-19 97.4 60 75.0
Glyma.03G155400 Glycine max HOM05D006086 ORTHO05D007396 5.3e-19 97.1 63 77.8
HanXRQChr15g0492031 Helianthus annuus HOM05D006086 ORTHO05D007396 6.9e-19 96.7 60 78.3
Zm00001eb151540 Zea mays HOM05D006086 ORTHO05D007396 6.9e-19 96.7 60 71.7
ECA240G3083 Erigeron canadensis HOM05D006086 ORTHO05D007396 9.0e-19 96.3 68 70.6
Lsat_1_v5_gn_7_65621 Lactuca sativa HOM05D006086 ORTHO05D007396 9.0e-19 96.3 58 79.3
Thecc.01G143500 Theobroma cacao HOM05D006086 ORTHO05D007396 9.0e-19 96.3 62 71.0
C01p41850 Brassica napus HOM05D006086 ORTHO05D007396 1.5e-18 95.5 54 81.5
BolC1t04139H Brassica oleracea HOM05D006086 ORTHO05D007396 1.5e-18 95.5 54 81.5
Glyma.19G157600 Glycine max HOM05D006086 ORTHO05D007396 1.5e-18 95.5 63 76.2
CARHR098310 Cardamine hirsuta HOM05D006086 ORTHO05D007396 2.0e-18 95.1 61 75.4
CiPaw.07G090400 Carya illinoinensis HOM05D006086 ORTHO05D007396 3.4e-18 94.4 61 75.4
Gohir.A02G031700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 3.4e-18 94.4 61 78.7
Gohir.D02G038400 Gossypium hirsutum HOM05D006086 ORTHO05D007396 3.4e-18 94.4 61 78.7
Gorai.005G042300 Gossypium raimondii HOM05D006086 ORTHO05D007396 3.4e-18 94.4 61 78.7
Lj1g0005264 Lotus japonicus HOM05D006086 ORTHO05D007396 3.4e-18 94.4 63 74.6
MD02G1003000 Malus domestica HOM05D006086 ORTHO05D007396 4.5e-18 94.0 64 70.3
Manes.05G077700 Manihot esculenta HOM05D006086 ORTHO05D007396 4.5e-18 94.0 62 72.6
MD16G1192800 Malus domestica HOM05D006086 ORTHO05D007396 5.9e-18 93.6 55 76.4
Potri.013G037800 Populus trichocarpa HOM05D006086 ORTHO05D007396 5.9e-18 93.6 64 71.9
ATR0737G002 Amborella trichopoda HOM05D006086 ORTHO05D007396 7.6e-18 93.2 67 70.1
Os01g0778500 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 7.6e-18 93.2 60 70.0
Potri.005G211000 Populus trichocarpa HOM05D006086 ORTHO05D007396 7.6e-18 93.2 63 73.0
Medtr7g095120 Medicago truncatula HOM05D006086 ORTHO05D007396 1.3e-17 92.4 62 72.6
Psat4g210480 Pisum sativum HOM05D006086 ORTHO05D007396 1.3e-17 92.4 57 71.9
Os07g0572400 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 1.7e-17 92.0 53 79.2
Psat3g063680 Pisum sativum HOM05D006086 ORTHO05D007396 3.8e-17 90.9 63 71.4
CSS0043804 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 1.1e-16 89.4 64 71.9
CiPaw.08G106900 Carya illinoinensis HOM05D006086 ORTHO05D007396 1.1e-16 89.4 58 70.7
BolC5t32839H Brassica oleracea HOM05D006086 ORTHO05D007396 1.9e-16 88.6 57 73.7
Gohir.D11G232700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 2.5e-16 88.2 62 64.5
MD15G1146200 Malus domestica HOM05D006086 ORTHO05D007396 2.5e-16 88.2 55 74.5
Gorai.003G066200 Gossypium raimondii HOM05D006086 ORTHO05D007396 3.2e-16 87.8 62 64.5
Lalb_Chr02g0142691 Lupinus albus HOM05D006086 ORTHO05D007396 4.2e-16 87.4 52 76.9
Os03g0806800 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 4.2e-16 87.4 54 72.2
Sed0017079 Sechium edule HOM05D006086 ORTHO05D007396 5.5e-16 87.0 61 70.5
COL.COLO4_12126 Corchorus olitorius HOM05D006086 ORTHO05D007396 9.3e-16 86.3 65 64.6
Medtr5g006220 Medicago truncatula HOM05D006086 ORTHO05D007396 9.3e-16 86.3 61 65.6
Zm00001eb107360 Zea mays HOM05D006086 ORTHO05D007396 9.3e-16 86.3 60 70.0
Os07g0204400 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 4.6e-15 84.0 54 66.7
Manes.09G155600 Manihot esculenta HOM05D006086 ORTHO05D007396 6.1e-15 83.6 58 67.2
Hund09501 Selenicereus undatus HOM05D006086 ORTHO05D007396 1.0e-14 82.8 56 69.6
Dinv32919 Davidia involucrata HOM05D001893 ORTHO05D007396 5.1e-14 80.5 53 69.8
Cc07_g10970 Coffea canephora HOM05D006086 ORTHO05D007396 6.7e-14 80.1 56 66.1
Oeu034961.1 Olea europaea HOM05D006086 ORTHO05D007396 2.5e-13 78.2 53 62.3
BraA03t13422Z Brassica rapa HOM05D006086 ORTHO05D007396 5.7e-13 77.0 49 75.5
CsaV3_7G028010 Cucumis sativus L. HOM05D006086 ORTHO05D007396 9.7e-13 76.3 58 65.5
ClCG09G007150 Citrullus lanatus HOM05D006086 ORTHO05D007396 1.6e-12 75.5 59 67.8
Lalb_Chr07g0189661 Lupinus albus HOM05D006086 ORTHO05D007396 1.6e-12 75.5 55 67.3
HanXRQChr04g0118911 Helianthus annuus HOM05D006086 ORTHO05D007396 8.2e-12 73.2 54 61.1
Lsat_1_v5_gn_8_56520 Lactuca sativa HOM05D006086 ORTHO05D007396 4.1e-11 70.9 54 61.1
Rhsim02G0023700 Rhododendron simsii HOM05D006086 ORTHO05D007396 6.9e-11 70.1 57 61.4
Medtr5g006260 Medicago truncatula HOM05D006086 ORTHO05D007396 3.8e-09 64.3 81 42.0
Actinidia00772 Actinidia chinensis HOM05D001893 ORTHO05D001914 1.9e-08 62.0 40 70.0
SEGI_12043 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 4.2e-08 60.8 52 57.7
DCAR_012810 Daucus carota HOM05D002570 ORTHO05D002689 2.7e-07 58.2 55 43.6
SEGI_15030 Sequoiadendron giganteum HOM05D002570 ORTHO05D002689 7.9e-07 56.6 64 43.8
PSO170G3310 Papaver somniferum HOM05D002570 ORTHO05D002689 1.4e-06 55.8 63 39.7
SEGI_00264 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 1.4e-06 55.8 53 50.9
Pp3c4_16391 Physcomitrium patens HOM05D002570 ORTHO05D002689 2.3e-06 55.1 67 40.3
SEGI_39026 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 3.0e-06 54.7 27 85.2
PSO017G5699 Papaver somniferum HOM05D002570 ORTHO05D002689 5.1e-06 53.9 58 39.7


User provided reference genes

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