Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.GC3WT6 Arachis hypogaea HOM05D005513 ORTHO05D006848 1.3e-179 632.9 313 100.0
arahy.Tifrunner.gnm1.ann1.GWB5D5 Arachis hypogaea HOM05D005513 ORTHO05D006848 2.1e-177 625.5 313 98.4
Medtr4g087590 Medicago truncatula HOM05D005513 ORTHO05D006848 5.1e-155 551.2 313 86.3
Phvul.003G059600 Phaseolus vulgaris HOM05D005513 ORTHO05D006848 5.1e-155 551.2 313 86.6
Ca_18624_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 6.7e-155 550.8 314 86.9
Glyma.07G206300 Glycine max HOM05D005513 ORTHO05D006848 8.7e-155 550.4 315 86.3
Glyma.02G138700 Glycine max HOM05D005513 ORTHO05D006848 1.9e-154 549.3 316 86.1
VMungo0251G3259 Vigna mungo HOM05D005513 ORTHO05D006848 1.9e-154 549.3 313 86.6
TPR.G23516 Trifolium pratense HOM05D005513 ORTHO05D006848 9.6e-154 547.0 313 86.3
Lalb_Chr16g0384361 Lupinus albus HOM05D005513 ORTHO05D006848 2.1e-153 545.8 316 85.4
Lj4g0013603 Lotus japonicus HOM05D005513 ORTHO05D006848 6.2e-153 544.3 316 85.4
Psat7g119320 Pisum sativum HOM05D005513 ORTHO05D006848 1.7e-150 536.2 313 85.0
Ca_18630_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 1.2e-143 513.5 304 83.9
CANSAT56G3287 Cannabis sativa HOM05D005513 ORTHO05D006848 2.3e-139 499.2 315 77.5
Cfa015273 Carpinus fangiana HOM05D005513 ORTHO05D006848 5.1e-139 498.0 314 78.3
TAR362G0948 Trochodendron aralioides HOM05D005513 ORTHO05D006848 8.7e-139 497.3 313 76.7
Nn7g37504 Nelumbo nucifera HOM05D005513 ORTHO05D006848 1.1e-138 496.9 314 76.4
Atru.chr4.1482 Acer truncatum HOM05D005513 ORTHO05D006848 2.8e-137 492.3 314 78.3
PGR042G2305 Punica granatum HOM05D005513 ORTHO05D006848 3.7e-137 491.9 316 76.6
Prupe.7G267200 Prunus persica HOM05D005513 ORTHO05D006848 1.4e-136 490.0 314 76.4
TWI38G0850 Tripterygium wilfordii HOM05D005513 ORTHO05D006848 3.1e-136 488.8 319 76.5
Manes.05G132000 Manihot esculenta HOM05D005513 ORTHO05D006848 9.0e-136 487.3 314 75.8
QL10p057731 Quercus lobata HOM05D005513 ORTHO05D006848 1.2e-135 486.9 313 76.7
Ciclev10021262m.g Citrus clementina HOM05D005513 ORTHO05D006848 1.5e-135 486.5 314 75.5
CSS0036954 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 2.0e-135 486.1 315 75.6
CiPaw.01G170000 Carya illinoinensis HOM05D005513 ORTHO05D006848 2.0e-135 486.1 314 76.1
RcHm_v2.0_Chr2g0085091 Rosa chinensis HOM05D005513 ORTHO05D006848 4.5e-135 485.0 314 75.8
Cpa.g.sc343.3 Carica papaya HOM05D005513 ORTHO05D006848 1.0e-134 483.8 314 75.8
FAN26G1480 Fragaria x ananassa HOM05D005513 ORTHO05D006848 1.3e-134 483.4 314 75.2
Actinidia11441 Actinidia chinensis HOM05D005513 ORTHO05D006848 2.2e-134 482.6 327 75.2
FvH4_1g00490 Fragaria vesca HOM05D005513 ORTHO05D006848 2.2e-134 482.6 314 74.2
Gohir.D10G121000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 3.8e-134 481.9 314 75.2
Gorai.011G132900 Gossypium raimondii HOM05D005513 ORTHO05D006848 3.8e-134 481.9 314 75.2
Thecc.04G162400 Theobroma cacao HOM05D005513 ORTHO05D006848 3.8e-134 481.9 314 76.1
FAN23G0174 Fragaria x ananassa HOM05D005513 ORTHO05D006848 5.0e-134 481.5 314 75.2
Duzib151G0764 Durio zibethinus HOM05D005513 ORTHO05D006848 1.4e-133 479.9 314 74.8
Gohir.A10G146000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 1.9e-133 479.6 314 74.5
Cc09_g04220 Coffea canephora HOM05D005513 ORTHO05D006848 5.5e-133 478.0 307 75.9
PSO675G7310 Papaver somniferum HOM05D005513 ORTHO05D006848 7.2e-133 477.6 316 74.1
Atru.chr4.1511 Acer truncatum HOM05D005587 ORTHO05D007287 1.2e-132 476.9 305 78.7
Sed0010820 Sechium edule HOM05D005513 ORTHO05D006848 1.6e-132 476.5 305 75.7
GSVIVG01038190001 Vitis vinifera HOM05D005513 ORTHO05D006848 2.1e-132 476.1 315 75.2
Sed0015185 Sechium edule HOM05D005513 ORTHO05D006848 1.0e-131 473.8 300 76.7
Sabra19G0110200 Salix brachista HOM05D005513 ORTHO05D006848 2.3e-131 472.6 305 76.1
Hund12358 Selenicereus undatus HOM05D005513 ORTHO05D006848 2.3e-131 472.6 313 72.5
FAN28G1408 Fragaria x ananassa HOM05D005513 ORTHO05D006848 6.7e-131 471.1 334 69.8
HanXRQChr10g0285921 Helianthus annuus HOM05D005513 ORTHO05D006848 6.7e-131 471.1 299 75.9
Nitab4.5_0001936g0090 Nicotiana tabacum HOM05D005513 ORTHO05D006848 8.8e-131 470.7 317 72.9
Potri.019G099100 Populus trichocarpa HOM05D005513 ORTHO05D006848 8.8e-131 470.7 305 76.1
SalBow3G2273 Salvia bowleyana HOM05D005513 ORTHO05D006848 2.5e-130 469.2 306 74.8
Oeu057533.3 Olea europaea HOM05D005513 ORTHO05D006848 3.3e-130 468.8 339 69.6
Nitab4.5_0008882g0020 Nicotiana tabacum HOM05D005513 ORTHO05D006848 4.3e-130 468.4 317 72.6
EL10Ac3g06111 Beta vulgaris HOM05D005513 ORTHO05D006848 3.7e-129 465.3 317 71.3
MSTRG.8188 Avicennia marina HOM05D005513 ORTHO05D006848 6.3e-129 464.5 300 75.7
CAN.G575.118 Capsicum annuum HOM05D005513 ORTHO05D006848 6.3e-129 464.5 317 72.6
QL10p057421 Quercus lobata HOM05D005513 ORTHO05D006848 6.3e-129 464.5 371 65.2
AUR62002417 Chenopodium quinoa HOM05D005513 ORTHO05D006848 1.1e-128 463.8 307 72.6
Migut.F01838 Erythranthe guttata HOM05D005513 ORTHO05D006848 1.1e-128 463.8 308 73.7
Eucgr.L00024 Eucalyptus grandis HOM05D005513 ORTHO05D006848 1.1e-128 463.8 316 72.5
PSO541G5416 Papaver somniferum HOM05D005513 ORTHO05D006848 1.1e-128 463.8 316 72.5
ATR0743G005 Amborella trichopoda HOM05D005513 ORTHO05D006848 1.4e-128 463.4 314 71.3
vmacro15699 Vaccinium macrocarpon HOM05D005513 ORTHO05D006848 2.4e-128 462.6 326 70.2
Aqoxy2G04162 Aquilegia oxysepala HOM05D005513 ORTHO05D006848 4.1e-128 461.8 305 72.8
CAN.G1579.15 Capsicum annuum HOM05D005513 ORTHO05D006848 4.1e-128 461.8 317 72.2
Peaxi162Scf00544g00118 Petunia axillaris HOM05D005513 ORTHO05D006848 4.1e-128 461.8 305 74.1
COL.COLO4_08197 Corchorus olitorius HOM05D005513 ORTHO05D006848 5.3e-128 461.5 310 73.9
CAN.G2177.12 Capsicum annuum HOM05D005513 ORTHO05D006848 1.5e-127 459.9 304 74.0
CSS0028849 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 2.6e-127 459.1 282 79.8
Atru.BG.100.p Acer truncatum HOM05D005513 ORTHO05D006848 4.5e-127 458.4 283 79.2
Lsat_1_v5_gn_2_40261 Lactuca sativa HOM05D005513 ORTHO05D006848 4.5e-127 458.4 322 71.7
AUR62023772 Chenopodium quinoa HOM05D005513 ORTHO05D006848 7.7e-127 457.6 307 72.3
CsaV3_6G032350 Cucumis sativus L. HOM05D005513 ORTHO05D006848 1.4e-125 453.4 305 74.1
PGSC0003DMG400004444 Solanum tuberosum HOM05D005513 ORTHO05D006848 1.4e-125 453.4 306 71.9
Sopen12g019010 Solanum pennellii HOM05D005513 ORTHO05D006848 2.5e-125 452.6 306 71.9
Os08g0542600 Oryza sativa ssp. japonica HOM05D005513 ORTHO05D006848 1.2e-124 450.3 300 71.0
THA.LOC104801693 Tarenaya hassleriana HOM05D005513 ORTHO05D006848 1.6e-124 449.9 300 70.3
Aa31LG3G16700 Aethionema arabicum HOM05D005513 ORTHO05D006848 3.6e-124 448.7 299 71.2
RhsimUnG0015400 Rhododendron simsii HOM05D005513 ORTHO05D006848 4.7e-124 448.4 349 66.2
CAN.G575.103 Capsicum annuum HOM05D005513 ORTHO05D006848 1.1e-122 443.7 316 69.9
BraA02t05034Z Brassica rapa HOM05D005513 ORTHO05D006848 1.5e-122 443.4 300 71.7
Thhalv10014198m.g Eutrema salsugineum HOM05D005513 ORTHO05D006848 3.3e-122 442.2 299 70.9
MD15G1148400 Malus domestica HOM05D005513 ORTHO05D006848 3.3e-122 442.2 282 77.3
AL6G20970 Arabidopsis lyrata HOM05D005513 ORTHO05D006848 5.7e-122 441.4 304 70.1
Eucgr.G01603 Eucalyptus grandis HOM05D005513 ORTHO05D006848 5.7e-122 441.4 316 70.6
HPP92_011686 Vanilla planifolia HOM05D005513 ORTHO05D006848 9.7e-122 440.7 300 70.7
HPP92_011691 Vanilla planifolia HOM05D005513 ORTHO05D006848 1.3e-121 440.3 300 70.7
Zm00001eb037350 Zea mays HOM05D005513 ORTHO05D006848 2.8e-121 439.1 298 70.5
A02p00500 Brassica napus HOM05D005513 ORTHO05D006848 3.7e-121 438.7 300 71.3
Sp6g32980 Schrenkiella parvula HOM05D005513 ORTHO05D006848 3.7e-121 438.7 299 69.9
Peaxi162Scf00544g00117 Petunia axillaris HOM05D005513 ORTHO05D006848 4.8e-121 438.3 304 70.1
BcaB05g21485 Brassica carinata HOM05D005513 ORTHO05D006848 6.3e-121 438.0 300 71.0
C02p04480 Brassica napus HOM05D005513 ORTHO05D006848 6.3e-121 438.0 300 71.0
CARHR202830 Cardamine hirsuta HOM05D005513 ORTHO05D006848 1.8e-120 436.4 300 70.7
Rhsim02G0085900 Rhododendron simsii HOM05D005513 ORTHO05D006848 2.4e-120 436.0 367 62.9
ECA238G0802 Erigeron canadensis HOM05D005513 ORTHO05D006848 7.0e-120 434.5 288 74.3
BolC2t06408H Brassica oleracea HOM05D005513 ORTHO05D006848 9.1e-120 434.1 300 70.3
AT5G10460 Arabidopsis thaliana HOM05D005513 ORTHO05D006848 3.4e-119 432.2 299 68.9
Carub.0006s0894 Capsella rubella HOM05D005513 ORTHO05D006848 7.7e-119 431.0 300 68.3
CAN.G2107.3 Capsicum annuum HOM05D005513 ORTHO05D006848 2.5e-117 426.0 298 72.8
BcaC03g13313 Brassica carinata HOM05D005513 ORTHO05D006848 6.1e-116 421.4 300 69.0
SEGI_26385 Sequoiadendron giganteum HOM05D005513 ORTHO05D006848 1.8e-115 419.9 301 65.1
MELO3C011447.2 Cucumis melo HOM05D005513 ORTHO05D006848 2.0e-114 416.4 345 63.2
Lj6A199G41 Lonicera japonica HOM05D005513 ORTHO05D006848 1.7e-113 413.3 286 72.7
Dinv33223 Davidia involucrata HOM05D005513 ORTHO05D006848 4.5e-111 405.2 250 80.8
ClCG08G010170 Citrullus lanatus HOM05D005513 ORTHO05D006848 9.4e-109 397.5 305 67.2
Sc19g0006410 Simmondsia chinensis HOM05D005513 ORTHO05D006848 3.6e-108 395.6 250 78.0
SGA_v2.0_scaffold122G33215 Striga asiatica HOM05D005513 ORTHO05D006848 2.0e-103 379.8 280 68.2
Nitab4.5_0002604g0050 Nicotiana tabacum HOM05D005513 ORTHO05D006848 1.3e-102 377.1 298 65.1
CAN.G575.78 Capsicum annuum HOM05D005513 ORTHO05D006848 1.5e-101 373.6 250 74.0
Solyc12g038820.1 Solanum lycopersicum HOM05D005513 ORTHO05D006848 1.5e-101 373.6 251 73.3
CAN.G2075.11 Capsicum annuum HOM05D005513 ORTHO05D006848 7.2e-101 371.3 303 62.4
SMO119G0305 Selaginella moellendorffii HOM05D005513 ORTHO05D006848 1.0e-99 367.5 302 57.9
Nitab4.5_0000241g0250 Nicotiana tabacum HOM05D005513 ORTHO05D006848 1.2e-95 354.0 253 70.4
Haze_01354 Corylus avellana HOM05D005513 ORTHO05D006848 4.2e-93 345.5 315 60.0
DCAR_005450 Daucus carota HOM05D005513 ORTHO05D006848 1.7e-86 323.6 227 70.0
Medtr4g087600 Medicago truncatula HOM05D005513 ORTHO05D006848 1.6e-84 317.0 208 75.0
CAN.G2075.13 Capsicum annuum HOM05D005513 ORTHO05D006848 2.4e-80 303.1 235 67.7
Lj6A58T47 Lonicera japonica HOM05D005513 ORTHO05D006848 5.0e-78 295.4 202 73.3
MCO04G248 Micromonas commoda HOM05D005513 ORTHO05D006848 2.2e-73 280.0 344 46.5
AUR62021707 Chenopodium quinoa HOM05D005513 ORTHO05D006848 5.4e-72 275.4 186 72.0
CAN.G181.20 Capsicum annuum HOM05D005513 ORTHO05D006848 1.9e-69 266.9 190 70.5
PRCOL_00005454 Prasinoderma coloniale HOM05D005513 ORTHO05D006848 5.8e-58 228.8 303 43.6
Lj6A193T36 Lonicera japonica HOM05D005513 ORTHO05D006848 5.6e-53 212.2 174 66.7
Cre14.g609300 Chlamydomonas reinhardtii HOM05D005513 ORTHO05D006848 1.6e-52 210.7 318 39.6
Gorai.004G148900 Gossypium raimondii HOM05D005513 ORTHO05D006848 1.6e-52 210.7 164 65.2
CAN.G1703.16 Capsicum annuum HOM05D005513 ORTHO05D006848 5.8e-50 202.2 142 72.5
SHI25989 Sapria himalayana HOM05D000105 ORTHO05D000023 3.8e-49 199.5 170 60.0
CAN.G1565.3 Capsicum annuum HOM05D005513 ORTHO05D006848 7.8e-47 191.8 137 71.5
Cc00_g04390 Coffea canephora HOM05D005513 ORTHO05D006848 9.3e-40 168.3 109 73.4
Lj6A58T48 Lonicera japonica HOM05D005513 ORTHO05D006848 4.6e-39 166.0 136 64.7
Lj6A203T27 Lonicera japonica HOM05D005513 ORTHO05D006848 4.5e-34 149.4 100 73.0
CAN.G1703.15 Capsicum annuum HOM05D005513 ORTHO05D006848 1.5e-29 134.4 91 73.6
CAN.G12630.1 Capsicum annuum HOM05D005513 ORTHO05D006848 7.6e-26 122.1 79 77.2
Lj6A203G20 Lonicera japonica HOM05D005513 ORTHO05D006848 1.6e-23 114.4 175 41.1
RcHm_v2.0_Chr2g0085051 Rosa chinensis HOM05D005513 ORTHO05D343180 1.3e-22 111.3 85 67.1
EL10Ac7g16782 Beta vulgaris HOM05D005513 ORTHO05D006848 1.5e-21 107.8 66 78.8
Lj6C203G2 Lonicera japonica HOM05D005513 ORTHO05D006848 2.2e-20 104.0 77 70.1
SHI25988 Sapria himalayana HOM05D000105 ORTHO05D000023 2.2e-12 77.4 81 50.6
Lj6A192T18 Lonicera japonica HOM05D005513 ORTHO05D006848 1.8e-11 74.3 55 67.3
Lj6A230T44 Lonicera japonica HOM05D005513 ORTHO05D006848 9.1e-11 72.0 53 67.9
SHI25987 Sapria himalayana HOM05D005513 ORTHO05D006848 2.9e-09 67.0 51 62.7


User provided reference genes

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