Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.GADS7N Arachis hypogaea HOM05D005110 ORTHO05D006074 1.1e-98 363.2 174 100.0
arahy.Tifrunner.gnm1.ann1.NUG06Z Arachis hypogaea HOM05D005110 ORTHO05D006074 3.6e-94 348.2 176 96.0
Medtr2g086680 Medicago truncatula HOM05D005110 ORTHO05D006074 3.2e-50 202.2 181 61.3
Phvul.005G122600 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 2.7e-49 199.1 182 61.0
Glyma.13G315400 Glycine max HOM05D005110 ORTHO05D006074 5.7e-47 191.4 181 60.8
VMungo1080G1295 Vigna mungo HOM05D005110 ORTHO05D006074 7.4e-47 191.0 181 59.7
Lj3g0016581 Lotus japonicus HOM05D005110 ORTHO05D006074 4.8e-46 188.3 180 58.9
Glyma.12G091100 Glycine max HOM05D005110 ORTHO05D006074 1.0e-43 180.6 176 56.8
Lj3g0002892 Lotus japonicus HOM05D005110 ORTHO05D006074 1.7e-43 179.9 173 56.6
Psat5g259000 Pisum sativum HOM05D005110 ORTHO05D006074 2.2e-43 179.5 178 53.9
TPR.G17227 Trifolium pratense HOM05D005110 ORTHO05D006074 2.9e-43 179.1 178 56.7
Psat7g142160 Pisum sativum HOM05D005110 ORTHO05D006074 9.4e-42 174.1 178 55.6
arahy.Tifrunner.gnm1.ann1.XFIF97 Arachis hypogaea HOM05D005110 ORTHO05D006074 4.7e-41 171.8 178 59.0
Glyma.11G182100 Glycine max HOM05D005110 ORTHO05D006074 4.7e-41 171.8 175 54.3
Lalb_Chr03g0028181 Lupinus albus HOM05D005110 ORTHO05D006074 1.4e-40 170.2 178 55.6
arahy.Tifrunner.gnm1.ann1.EYNG7S Arachis hypogaea HOM05D005110 ORTHO05D006074 4.0e-40 168.7 178 57.3
Lalb_Chr01g0004911 Lupinus albus HOM05D005110 ORTHO05D006074 8.8e-40 167.5 178 54.5
QL01p011992 Quercus lobata HOM05D005110 ORTHO05D006074 1.2e-39 167.2 177 52.0
Phvul.011G095400 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 1.5e-39 166.8 173 54.3
QL01p011978 Quercus lobata HOM05D005110 ORTHO05D006074 4.4e-39 165.2 174 53.4
Gohir.D05G082600 Gossypium hirsutum HOM05D005110 ORTHO05D006074 5.7e-39 164.9 183 53.0
Gorai.009G084200 Gossypium raimondii HOM05D005110 ORTHO05D006074 5.7e-39 164.9 183 53.0
Gohir.A05G079700 Gossypium hirsutum HOM05D005110 ORTHO05D006074 7.5e-39 164.5 183 52.5
Lalb_Chr19g0136401 Lupinus albus HOM05D005110 ORTHO05D006074 9.7e-39 164.1 178 53.4
GSVIVG01036094001 Vitis vinifera HOM05D005110 ORTHO05D006074 6.3e-38 161.4 175 52.6
Dinv22825 Davidia involucrata HOM05D005110 ORTHO05D006074 3.1e-37 159.1 183 51.4
Duzib168G1438 Durio zibethinus HOM05D005110 ORTHO05D006074 3.1e-37 159.1 183 49.7
Thecc.09G280200 Theobroma cacao HOM05D005110 ORTHO05D006074 4.1e-37 158.7 176 52.3
CANSAT54G0919 Cannabis sativa HOM05D005110 ORTHO05D006074 2.7e-36 156.0 179 48.6
Cpa.g.sc195.13 Carica papaya HOM05D005110 ORTHO05D006074 3.5e-36 155.6 162 51.9
CSS0022586 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 4.5e-36 155.2 178 47.8
Actinidia25117 Actinidia chinensis HOM05D005110 ORTHO05D006074 5.9e-36 154.8 177 50.3
Duzib150G1383 Durio zibethinus HOM05D005110 ORTHO05D006074 7.7e-36 154.5 178 50.6
MD03G1148100 Malus domestica HOM05D005110 ORTHO05D006074 7.7e-36 154.5 176 49.4
TWI31G0848 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 7.7e-36 154.5 169 53.3
VMungo1127G0906 Vigna mungo HOM05D005110 ORTHO05D006074 7.7e-36 154.5 173 50.3
Dinv42535 Davidia involucrata HOM05D005110 ORTHO05D006074 1.0e-35 154.1 178 50.0
Cfa009996 Carpinus fangiana HOM05D005110 ORTHO05D006074 2.2e-35 152.9 183 47.5
CiPaw.14G098700 Carya illinoinensis HOM05D005110 ORTHO05D006074 3.8e-35 152.1 174 50.0
TWI79G0870 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 3.8e-35 152.1 178 49.4
Ciclev10029378m.g Citrus clementina HOM05D005110 ORTHO05D006074 5.0e-35 151.8 179 52.5
Actinidia37076 Actinidia chinensis HOM05D005110 ORTHO05D006074 8.5e-35 151.0 181 49.2
CiPaw.13G134200 Carya illinoinensis HOM05D005110 ORTHO05D006074 1.1e-34 150.6 176 47.2
Prupe.6G134300 Prunus persica HOM05D005110 ORTHO05D006074 1.1e-34 150.6 180 48.9
Atru.chr3.3190 Acer truncatum HOM05D005110 ORTHO05D006074 2.5e-34 149.4 185 49.2
MD11G1167600 Malus domestica HOM05D005110 ORTHO05D006074 5.5e-34 148.3 176 48.9
Hma1.2p1_0587F.1_g184070 Hydrangea macrophylla HOM05D005110 ORTHO05D006074 7.2e-34 147.9 179 45.3
COL.COLO4_34021 Corchorus olitorius HOM05D005110 ORTHO05D006074 9.4e-34 147.5 175 47.4
FvH4_3g25370 Fragaria vesca HOM05D005110 ORTHO05D006074 9.4e-34 147.5 176 50.0
FAN21G3897 Fragaria x ananassa HOM05D005110 ORTHO05D006074 9.4e-34 147.5 176 50.0
Duzib170G1118 Durio zibethinus HOM05D005110 ORTHO05D006074 1.6e-33 146.7 177 49.2
FAN11G1413 Fragaria x ananassa HOM05D005110 ORTHO05D006074 1.6e-33 146.7 176 50.0
Rhsim13G0112900 Rhododendron simsii HOM05D005110 ORTHO05D006074 2.1e-33 146.4 187 46.0
FAN25G3715 Fragaria x ananassa HOM05D005110 ORTHO05D006074 2.7e-33 146.0 176 50.0
Nn2g14215 Nelumbo nucifera HOM05D005110 ORTHO05D006074 2.7e-33 146.0 176 48.3
CAN.G919.35 Capsicum annuum HOM05D005110 ORTHO05D006074 6.1e-33 144.8 180 46.1
Rhsim01G0204600 Rhododendron simsii HOM05D005110 ORTHO05D006074 2.3e-32 142.9 184 47.8
Peaxi162Scf00091g00622 Petunia axillaris HOM05D005110 ORTHO05D006074 6.8e-32 141.4 174 44.3
PGSC0003DMG400005884 Solanum tuberosum HOM05D005110 ORTHO05D006074 2.0e-31 139.8 178 46.1
vmacro03324 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 4.4e-31 138.7 188 46.3
DCAR_010338 Daucus carota HOM05D005110 ORTHO05D006074 9.8e-31 137.5 178 44.4
SGA_v2.0_scaffold22G09852 Striga asiatica HOM05D005110 ORTHO05D006074 4.8e-30 135.2 173 45.7
Manes.11G163300 Manihot esculenta HOM05D005110 ORTHO05D006074 6.3e-30 134.8 173 48.0
ECA248G3565 Erigeron canadensis HOM05D005110 ORTHO05D006074 8.3e-30 134.4 186 43.5
Hund18768 Selenicereus undatus HOM05D005110 ORTHO05D006074 8.3e-30 134.4 171 46.2
MBI17_g32417_MAGBIO Magnolia biondii HOM05D005110 ORTHO05D006074 1.4e-29 133.7 181 44.2
PGR102G3267 Punica granatum HOM05D005110 ORTHO05D006074 1.4e-29 133.7 175 45.1
Sed0010097 Sechium edule HOM05D005110 ORTHO05D006074 1.4e-29 133.7 186 46.2
Oeu027156.1 Olea europaea HOM05D005110 ORTHO05D006074 1.8e-29 133.3 178 44.4
CSS0002660 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 2.4e-29 132.9 179 45.8
Potri.009G019300 Populus trichocarpa HOM05D005110 ORTHO05D006074 2.4e-29 132.9 179 45.8
Sopen06g030680 Solanum pennellii HOM05D005110 ORTHO05D006074 5.4e-29 131.7 179 43.0
Oeu035569.1 Olea europaea HOM05D005110 ORTHO05D006074 7.0e-29 131.3 180 45.0
Nitab4.5_0005472g0010 Nicotiana tabacum HOM05D005110 ORTHO05D006074 9.1e-29 131.0 179 43.6
Cc01_g08910 Coffea canephora HOM05D005110 ORTHO05D006074 1.6e-28 130.2 178 44.4
Migut.D02434 Erythranthe guttata HOM05D005110 ORTHO05D006074 2.0e-28 129.8 180 42.8
Sabra09G0012800 Salix brachista HOM05D005110 ORTHO05D006074 2.7e-28 129.4 180 43.9
Eucgr.B03836 Eucalyptus grandis HOM05D005110 ORTHO05D006074 3.5e-28 129.0 196 42.3
Nitab4.5_0000937g0070 Nicotiana tabacum HOM05D005110 ORTHO05D006074 3.5e-28 129.0 177 44.6
Solyc06g074260.4 Solanum lycopersicum HOM05D005110 ORTHO05D006074 4.5e-28 128.6 178 42.7
ClCG02G022270 Citrullus lanatus HOM05D005110 ORTHO05D006074 7.7e-28 127.9 179 45.8
Oeu002365.1 Olea europaea HOM05D005110 ORTHO05D006074 7.7e-28 127.9 179 43.0
MSTRG.18766 Avicennia marina HOM05D005110 ORTHO05D006074 1.0e-27 127.5 178 44.4
CsaV3_6G038400 Cucumis sativus L. HOM05D005110 ORTHO05D006074 2.3e-27 126.3 164 47.0
MSTRG.21034 Avicennia marina HOM05D005110 ORTHO05D006074 2.9e-27 125.9 178 44.4
THA.LOC104800521 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 5.0e-27 125.2 172 46.5
MELO3C014504.2 Cucumis melo HOM05D005110 ORTHO05D006074 8.6e-27 124.4 164 45.7
Lsat_1_v5_gn_1_59041 Lactuca sativa HOM05D005110 ORTHO05D006074 1.5e-26 123.6 169 46.2
HanXRQChr13g0426031 Helianthus annuus HOM05D005110 ORTHO05D006074 2.5e-26 122.9 184 41.8
BcaC02g10869 Brassica carinata HOM05D005110 ORTHO05D006074 3.3e-26 122.5 175 44.0
DCAR_012208 Daucus carota HOM05D005110 ORTHO05D006074 3.3e-26 122.5 180 41.7
A07p18150 Brassica napus HOM05D005110 ORTHO05D006074 1.2e-25 120.6 167 44.9
C04p24220 Brassica napus HOM05D005110 ORTHO05D006074 1.2e-25 120.6 175 44.0
BolC4t23920H Brassica oleracea HOM05D005110 ORTHO05D006074 1.2e-25 120.6 175 44.0
BraA07t29533Z Brassica rapa HOM05D005110 ORTHO05D006074 1.2e-25 120.6 167 44.9
Thhalv10002110m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 1.6e-25 120.2 152 46.7
QL01p011973 Quercus lobata HOM05D005110 ORTHO05D006074 3.6e-25 119.0 176 42.0
CARHR119990 Cardamine hirsuta HOM05D005110 ORTHO05D006074 4.7e-25 118.6 175 42.9
Sp4g10180 Schrenkiella parvula HOM05D005110 ORTHO05D006074 4.7e-25 118.6 153 46.4
Sc06g0008710 Simmondsia chinensis HOM05D005110 ORTHO05D006074 6.1e-25 118.2 187 40.6
vmacro14345 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 8.0e-25 117.9 186 40.9
BcaB02g10088 Brassica carinata HOM05D005110 ORTHO05D006074 1.4e-24 117.1 175 43.4
Carub.0004s0802 Capsella rubella HOM05D005110 ORTHO05D006074 1.4e-24 117.1 153 47.7
ClCG01G012070 Citrullus lanatus HOM05D005110 ORTHO05D006074 3.0e-24 115.9 187 39.0
HanXRQChr01g0024471 Helianthus annuus HOM05D005110 ORTHO05D006074 1.2e-23 114.0 181 40.9
Thhalv10014830m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 1.5e-23 113.6 180 42.2
AT2G27385 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 2.6e-23 112.8 175 42.3
Aqoxy4G02728 Aquilegia oxysepala HOM05D005110 ORTHO05D006074 3.4e-23 112.5 180 38.9
SalBow6G3038 Salvia bowleyana HOM05D005110 ORTHO05D006074 3.4e-23 112.5 179 42.5
BcaB08g36432 Brassica carinata HOM05D000477 ORTHO05D006074 5.7e-23 111.7 177 43.5
MSTRG.17701 Avicennia marina HOM05D005110 ORTHO05D006074 9.8e-23 110.9 175 41.7
Sp6g22820 Schrenkiella parvula HOM05D005110 ORTHO05D006074 9.8e-23 110.9 178 42.1
C02p10870 Brassica napus HOM05D005110 ORTHO05D006074 2.2e-22 109.8 177 41.2
BraA02t05659Z Brassica rapa HOM05D005110 ORTHO05D006074 3.7e-22 109.0 179 42.5
CsaV3_1G014930 Cucumis sativus L. HOM05D005110 ORTHO05D006074 3.7e-22 109.0 173 38.2
CsaV3_1G015850 Cucumis sativus L. HOM05D005110 ORTHO05D006074 3.7e-22 109.0 173 38.2
BcaB05g22726 Brassica carinata HOM05D005110 ORTHO05D006074 6.3e-22 108.2 178 42.1
AL4G21340 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 8.3e-22 107.8 175 42.3
AL6G33450 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 8.3e-22 107.8 178 40.4
AT5G22430 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 8.3e-22 107.8 178 40.4
Carub.0006s2017 Capsella rubella HOM05D005110 ORTHO05D006074 8.3e-22 107.8 178 41.0
CARHR191100 Cardamine hirsuta HOM05D005110 ORTHO05D006074 1.4e-21 107.1 180 43.3
Aa31LG1G13130 Aethionema arabicum HOM05D005110 ORTHO05D006074 7.0e-21 104.8 177 40.1
BNapus_Darmor_BZH_scaffold_38p00660 Brassica napus HOM05D005110 ORTHO05D006074 9.2e-21 104.4 179 40.8
BolC2t07157H Brassica oleracea HOM05D005110 ORTHO05D006074 9.2e-21 104.4 179 41.3
Haze_23356 Corylus avellana HOM05D005110 ORTHO05D006074 5.9e-20 101.7 104 51.0
MELO3C004693.2 Cucumis melo HOM05D005110 ORTHO05D006074 7.8e-20 101.3 187 36.9
THA.LOC104810920 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 1.0e-19 100.9 174 40.2
TAR623G0362 Trochodendron aralioides HOM05D005110 ORTHO05D006074 6.6e-19 98.2 126 42.9
Manes.04G002101 Manihot esculenta HOM05D005110 ORTHO05D006074 1.9e-18 96.7 117 42.7
Hund20930 Selenicereus undatus HOM05D005110 ORTHO05D006074 1.9e-18 96.7 135 45.2
BcaC03g13883 Brassica carinata HOM05D005110 ORTHO05D006074 3.3e-18 95.9 149 38.9
Lj2P968T16 Lonicera japonica HOM05D005110 ORTHO05D006074 4.3e-18 95.5 123 46.3
TAR369G1010 Trochodendron aralioides HOM05D005110 ORTHO05D006074 1.6e-17 93.6 128 43.8
TPR.G4458 Trifolium pratense HOM05D005110 ORTHO05D006074 3.6e-17 92.4 70 64.3
Actinidia35470 Actinidia chinensis HOM05D005110 ORTHO05D006074 1.3e-14 84.0 94 50.0
HPP92_011908 Vanilla planifolia HOM05D005110 ORTHO05D006074 4.1e-13 79.0 117 42.7
ATR0580G107 Amborella trichopoda HOM05D005110 ORTHO05D006074 9.2e-13 77.8 187 32.1
unitig_746.g26607 Utricularia gibba HOM05D005110 ORTHO05D006074 9.2e-13 77.8 107 37.4
vmacro14354 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 6.6e-11 71.6 102 39.2
BolC9t58287H Brassica oleracea HOM05D005110 ORTHO05D006074 2.3e-08 63.2 169 33.7
C09p54160 Brassica napus HOM05D005110 ORTHO05D006074 5.2e-08 62.0 168 33.3


User provided reference genes

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