Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.G9C5AI Arachis hypogaea HOM05D005725 ORTHO05D007531 3.1e-273 944.5 474 100.0
arahy.Tifrunner.gnm1.ann1.GBFD5K Arachis hypogaea HOM05D005725 ORTHO05D007531 1.5e-267 925.6 485 96.7
arahy.Tifrunner.gnm1.ann1.2M6VYA Arachis hypogaea HOM05D005725 ORTHO05D007531 3.4e-235 818.1 453 93.2
Lalb_Chr18g0051971 Lupinus albus HOM05D005725 ORTHO05D007531 1.1e-164 583.9 446 67.9
Medtr2g437810 Medicago truncatula HOM05D005725 ORTHO05D007531 8.5e-162 574.3 447 66.7
Glyma.15G155900 Glycine max HOM05D005725 ORTHO05D007531 2.1e-160 569.7 446 66.1
TPR.G30931 Trifolium pratense HOM05D005725 ORTHO05D007531 3.6e-160 568.9 439 66.3
Lj6g0004794 Lotus japonicus HOM05D005725 ORTHO05D007531 4.8e-157 558.5 449 67.0
Glyma.09G048600 Glycine max HOM05D005725 ORTHO05D007531 1.3e-154 550.4 446 64.8
Phvul.009G244300 Phaseolus vulgaris HOM05D005725 ORTHO05D007531 1.1e-153 547.4 444 64.2
VMungo1309G0521 Vigna mungo HOM05D005725 ORTHO05D007531 2.1e-152 543.1 470 60.4
Psat1g151080 Pisum sativum HOM05D005725 ORTHO05D007531 1.3e-149 533.9 447 62.6
Ca_02400_v3 Cicer arietinum L. HOM05D005725 ORTHO05D007531 3.5e-147 525.8 488 59.2
Potri.001G075300 Populus trichocarpa HOM05D005725 ORTHO05D007531 1.9e-113 413.7 441 52.6
CANSAT54G1139 Cannabis sativa HOM05D005725 ORTHO05D007531 1.8e-111 407.1 443 52.6
Nn7g38404 Nelumbo nucifera HOM05D005725 ORTHO05D007531 2.6e-110 403.3 450 50.7
Dinv17876 Davidia involucrata HOM05D005725 ORTHO05D007531 4.4e-110 402.5 449 51.9
Manes.03G071900 Manihot esculenta HOM05D005725 ORTHO05D007531 6.4e-109 398.7 441 50.6
CiPaw.10G107600 Carya illinoinensis HOM05D005725 ORTHO05D007531 1.6e-107 394.0 454 51.3
RcHm_v2.0_Chr5g0021701 Rosa chinensis HOM05D005725 ORTHO05D007531 5.1e-106 389.0 440 50.7
MELO3C007000.2 Cucumis melo HOM05D005725 ORTHO05D007531 3.3e-105 386.3 447 50.1
GSVIVG01010083001 Vitis vinifera HOM05D005725 ORTHO05D007531 4.3e-105 386.0 447 49.9
FvH4_3g13240 Fragaria vesca HOM05D005725 ORTHO05D007531 2.8e-104 383.3 442 49.3
FAN21G2681 Fragaria x ananassa HOM05D005725 ORTHO05D007531 3.6e-104 382.9 450 49.1
TWI38G1126 Tripterygium wilfordii HOM05D005725 ORTHO05D007531 3.6e-104 382.9 441 49.7
FAN11G2553 Fragaria x ananassa HOM05D005725 ORTHO05D007531 2.7e-99 366.7 471 46.3
Prupe.4G119800 Prunus persica HOM05D005725 ORTHO05D007531 1.0e-98 364.8 442 48.0
Thecc.02G002000 Theobroma cacao HOM05D005725 ORTHO05D007531 1.0e-98 364.8 441 48.5
FAN16G0048 Fragaria x ananassa HOM05D005725 ORTHO05D007531 8.7e-98 361.7 441 48.3
Cfa001153 Carpinus fangiana HOM05D005725 ORTHO05D007531 7.3e-97 358.6 390 52.1
Aqoxy1G01377 Aquilegia oxysepala HOM05D005725 ORTHO05D007531 5.3e-95 352.4 452 46.0
Sabra01G0053700 Salix brachista HOM05D005725 ORTHO05D007531 1.5e-94 350.9 572 40.7
COL.COLO4_25036 Corchorus olitorius HOM05D005725 ORTHO05D007531 8.4e-93 345.1 441 47.6
MD05G1243800 Malus domestica HOM05D005725 ORTHO05D007531 2.4e-92 343.6 445 45.8
ClCG01G025890 Citrullus lanatus HOM05D005725 ORTHO05D007531 4.2e-92 342.8 424 49.8
Atru.chr10.248 Acer truncatum HOM05D005725 ORTHO05D007531 2.3e-90 337.0 441 45.1
Gohir.A11G047200 Gossypium hirsutum HOM05D005725 ORTHO05D007531 9.6e-89 331.6 446 47.1
Gorai.007G055200 Gossypium raimondii HOM05D005725 ORTHO05D007531 3.7e-88 329.7 446 46.9
Gohir.D11G050800 Gossypium hirsutum HOM05D005725 ORTHO05D007531 8.1e-88 328.6 446 46.9
PSO541G5061 Papaver somniferum HOM05D005725 ORTHO05D007531 1.4e-87 327.8 456 44.5
ECA232G4493 Erigeron canadensis HOM05D005725 ORTHO05D007531 1.8e-87 327.4 449 45.2
Duzib132G0485 Durio zibethinus HOM05D005725 ORTHO05D007531 4.0e-87 326.2 450 46.7
FAN25G0714 Fragaria x ananassa HOM05D005725 ORTHO05D007531 5.3e-87 325.9 443 44.2
Eucgr.D00006 Eucalyptus grandis HOM05D005725 ORTHO05D007531 9.9e-86 321.6 441 45.1
HanXRQChr09g0257851 Helianthus annuus HOM05D005725 ORTHO05D007531 1.3e-85 321.2 451 43.5
Sopen01g016500 Solanum pennellii HOM05D005725 ORTHO05D007531 2.4e-84 317.0 447 43.8
DCAR_001262 Daucus carota HOM05D005725 ORTHO05D007531 7.1e-84 315.5 447 43.8
Solyc01g021640.3 Solanum lycopersicum HOM05D005725 ORTHO05D007531 9.3e-84 315.1 447 43.8
Sed0022851 Sechium edule HOM05D005725 ORTHO05D007531 1.6e-83 314.3 415 45.8
AL6G28440 Arabidopsis lyrata HOM05D005725 ORTHO05D007531 4.8e-80 302.8 448 44.2
CsaV3_6G053120 Cucumis sativus L. HOM05D005725 ORTHO05D007531 1.1e-79 301.6 347 49.0
AT5G17370 Arabidopsis thaliana HOM05D005725 ORTHO05D007531 3.4e-78 296.6 448 43.8
Ah.03g147910 Amaranthus hybridus HOM05D005725 ORTHO05D007531 8.4e-77 292.0 444 41.4
Carub.0006s1558 Capsella rubella HOM05D005725 ORTHO05D007531 5.5e-76 289.3 444 43.7
AUR62003571 Chenopodium quinoa HOM05D005725 ORTHO05D007531 7.1e-76 288.9 441 42.4
PGR004G2791 Punica granatum HOM05D005725 ORTHO05D007531 6.0e-75 285.8 445 40.9
Peaxi162Scf00378g00520 Petunia axillaris HOM05D005725 ORTHO05D007531 1.8e-74 284.3 443 43.1
Ciclev10015389m.g Citrus clementina HOM05D005725 ORTHO05D007531 5.7e-73 279.3 413 44.8
QL11p011022 Quercus lobata HOM05D005725 ORTHO05D007531 4.1e-71 273.1 810 30.1
CARHR195840 Cardamine hirsuta HOM05D005725 ORTHO05D007531 1.3e-69 268.1 452 41.6
vmacro03566 Vaccinium macrocarpon HOM05D005725 ORTHO05D007531 2.9e-69 266.9 622 33.6
Lsat_1_v5_gn_8_107401 Lactuca sativa HOM05D005725 ORTHO05D007531 5.0e-69 266.2 406 41.9
A02p04160 Brassica napus HOM05D005725 ORTHO05D007531 1.1e-68 265.0 458 41.9
BcaC03g18554 Brassica carinata HOM05D005725 ORTHO05D007531 2.5e-68 263.8 458 40.8
BolC2t06810H Brassica oleracea HOM05D005725 ORTHO05D007531 3.2e-68 263.5 459 41.8
Thhalv10015915m.g Eutrema salsugineum HOM05D005725 ORTHO05D007531 3.2e-68 263.5 451 41.5
BraA02t05379Z Brassica rapa HOM05D005725 ORTHO05D007531 9.4e-68 261.9 454 41.6
MSTRG.16376 Avicennia marina HOM05D005725 ORTHO05D007531 1.2e-67 261.5 439 38.5
Sp6g26850 Schrenkiella parvula HOM05D005725 ORTHO05D007531 2.1e-67 260.8 453 41.3
C02p09010 Brassica napus HOM05D005725 ORTHO05D007531 6.1e-67 259.2 458 41.0
Aa31LG11G12260 Aethionema arabicum HOM05D005725 ORTHO05D007531 1.4e-66 258.1 464 38.4
Hund26771 Selenicereus undatus HOM05D005725 ORTHO05D007531 1.8e-66 257.7 431 39.7
Cc09_g04730 Coffea canephora HOM05D005725 ORTHO05D007531 6.7e-66 255.8 449 38.3
TAR626G0027 Trochodendron aralioides HOM05D005725 ORTHO05D007531 8.8e-66 255.4 272 52.9
Os07g0108000 Oryza sativa ssp. japonica HOM05D005725 ORTHO05D007531 1.1e-65 255.0 459 37.9
BcaB05g23263 Brassica carinata HOM05D005725 ORTHO05D007531 1.9e-65 254.2 457 40.3
Zm00001eb298410 Zea mays HOM05D005725 ORTHO05D007531 6.3e-64 249.2 453 37.7
ATR0794G001 Amborella trichopoda HOM05D005725 ORTHO05D007531 1.8e-63 247.7 446 39.0
SalBow8G4963 Salvia bowleyana HOM05D005725 ORTHO05D007531 7.7e-62 242.3 443 38.8
Migut.M02028 Erythranthe guttata HOM05D005725 ORTHO05D007531 5.0e-61 239.6 441 37.9
HPP92_000831 Vanilla planifolia HOM05D005725 ORTHO05D007531 7.4e-57 225.7 460 34.3
AUR62017886 Chenopodium quinoa HOM05D005725 ORTHO05D007531 1.3e-56 224.9 445 36.6
CSS0030006 Camellia sinensis var. sinensis HOM05D005725 ORTHO05D007531 5.9e-54 216.1 453 35.3
Nitab4.5_0000253g0020 Nicotiana tabacum HOM05D005725 ORTHO05D007531 8.5e-53 212.2 332 41.3
Nitab4.5_0001484g0010 Nicotiana tabacum HOM05D005725 ORTHO05D007531 2.0e-49 201.1 333 40.8
Atru.chr2.2825 Acer truncatum HOM05D005725 ORTHO05D007531 3.7e-48 196.8 350 38.9
Duzib052G0524 Durio zibethinus HOM05D005725 ORTHO05D007531 1.1e-47 195.3 308 41.9
SHI12770 Sapria himalayana HOM05D005725 ORTHO05D000023 3.5e-46 190.3 274 41.6
RcHm_v2.0_Chr5g0021601 Rosa chinensis HOM05D005725 ORTHO05D007531 1.1e-44 185.3 289 41.5
Sc05g0005240 Simmondsia chinensis HOM05D005725 ORTHO05D007531 3.3e-41 173.7 329 37.7
Haze_05198 Corylus avellana HOM05D005725 ORTHO05D007531 4.4e-41 173.3 196 51.5
DCAR_004356 Daucus carota HOM05D005725 ORTHO05D007531 5.7e-41 172.9 385 33.5
ECA232G1808 Erigeron canadensis HOM05D005725 ORTHO05D007531 1.9e-36 157.9 294 39.8
CDE06G0984 Ceratophyllum demersum HOM05D005725 ORTHO05D007531 4.7e-35 153.3 285 36.8
Potri.003G155900 Populus trichocarpa HOM05D005725 ORTHO05D007531 8.0e-35 152.5 149 56.4
Pp3c6_29180 Physcomitrium patens HOM05D005725 ORTHO05D007531 3.4e-33 147.1 475 29.1
Haze_05199 Corylus avellana HOM05D005725 ORTHO05D007531 2.8e-32 144.1 250 40.8
TAR626G0843 Trochodendron aralioides HOM05D005725 ORTHO05D007531 7.7e-30 136.0 134 52.2
unitig_746.g26584 Utricularia gibba HOM05D005809 ORTHO05D007259 1.1e-28 132.1 218 39.9
DCAR_004355 Daucus carota HOM05D005725 ORTHO05D007531 8.0e-27 125.9 394 28.4
Mapoly0033s0026 Marchantia polymorpha HOM05D005725 ORTHO05D007531 1.7e-24 118.2 493 25.4
RcHm_v2.0_Chr5g0021611 Rosa chinensis HOM05D005725 ORTHO05D007531 3.5e-22 110.5 120 49.2
SGA_v2.0_scaffold423G51459 Striga asiatica HOM05D005725 ORTHO05D007531 3.1e-18 97.4 198 33.8
EL10Ac6g15292 Beta vulgaris HOM05D005725 ORTHO05D007531 1.2e-14 85.5 59 71.2
SMO230G0054 Selaginella moellendorffii HOM05D005725 ORTHO05D007531 1.2e-14 85.5 220 30.9
SEGI_40606 Sequoiadendron giganteum HOM05D005725 ORTHO05D007531 2.7e-14 84.3 132 40.2
A03p08350 Brassica napus HOM05D005725 ORTHO05D007531 1.0e-13 82.4 251 32.3
Oeu013488.1 Olea europaea HOM05D005725 ORTHO05D007531 5.0e-13 80.1 173 34.1
BcaC05g29074 Brassica carinata HOM05D005725 ORTHO05D007531 8.6e-13 79.3 138 41.3
C09p34670 Brassica napus HOM05D005725 ORTHO05D007531 4.3e-12 77.0 140 41.4
BolC9t56313H Brassica oleracea HOM05D005725 ORTHO05D007531 4.3e-12 77.0 140 41.4
CBR_g22873 Chara braunii HOM05D005725 ORTHO05D007531 1.2e-11 75.5 544 23.7
BolC5t33962H Brassica oleracea HOM05D005725 ORTHO05D007531 2.1e-11 74.7 124 42.7
AagrBONN_evm.TU.Sc2ySwM_368.2823 Anthoceros agrestis HOM05D005725 ORTHO05D007531 2.3e-10 71.2 457 22.3
BcaC04g22388 Brassica carinata HOM05D005725 ORTHO05D007531 5.2e-10 70.1 119 41.2
C09p19870 Brassica napus HOM05D005725 ORTHO05D007531 5.2e-10 70.1 119 41.2
BolC9t54892H Brassica oleracea HOM05D005725 ORTHO05D007531 5.2e-10 70.1 119 41.2
unitig_746.g26585 Utricularia gibba HOM05D005725 ORTHO05D007531 8.9e-10 69.3 140 34.3
Atru.chr3.3228 Acer truncatum HOM05D000154 ORTHO05D000092 2.0e-09 68.2 61 50.8
Ciclev10017729m.g Citrus clementina HOM05D005725 ORTHO05D007531 3.2e-07 60.8 38 73.7
Oeu005615.1 Olea europaea HOM05D000039 ORTHO05D005263 9.2e-07 59.3 38 65.8
SHI12772 Sapria himalayana HOM05D005725 ORTHO05D007531 7.8e-06 56.2 74 36.5


User provided reference genes

Program Settings