Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.A1QMDX Arachis hypogaea HOM05D005684 ORTHO05D007427 4.0e-142 508.1 251 100.0
arahy.Tifrunner.gnm1.ann1.G9AZJ3 Arachis hypogaea HOM05D005684 ORTHO05D007427 4.0e-142 508.1 251 100.0
Lj6g0016495 Lotus japonicus HOM05D005684 ORTHO05D007427 1.7e-137 492.7 251 96.0
Phvul.006G040700 Phaseolus vulgaris HOM05D005684 ORTHO05D007427 7.2e-136 487.3 251 95.6
Lalb_Chr06g0171921 Lupinus albus HOM05D005684 ORTHO05D007427 1.2e-135 486.5 251 95.6
TPR.G16583 Trifolium pratense HOM05D005684 ORTHO05D007427 1.2e-135 486.5 250 95.2
VMungo0540G0423 Vigna mungo HOM05D005684 ORTHO05D007427 1.2e-135 486.5 251 95.2
Ca_14720_v3 Cicer arietinum L. HOM05D005684 ORTHO05D007427 8.0e-135 483.8 250 94.8
Medtr3g051210 Medicago truncatula HOM05D005684 ORTHO05D007427 1.8e-134 482.6 250 94.4
Glyma.08G314600 Glycine max HOM05D005684 ORTHO05D007427 3.4e-133 478.4 251 93.6
Glyma.18G099600 Glycine max HOM05D005684 ORTHO05D007427 9.8e-133 476.9 251 93.2
CANSAT21G0158 Cannabis sativa HOM05D005684 ORTHO05D007427 4.9e-132 474.6 249 91.6
Manes.03G124800 Manihot esculenta HOM05D005684 ORTHO05D007427 8.3e-132 473.8 249 91.6
CiPaw.12G128600 Carya illinoinensis HOM05D005684 ORTHO05D007427 1.8e-131 472.6 246 93.1
TWI38G0783 Tripterygium wilfordii HOM05D005684 ORTHO05D007427 3.2e-131 471.9 251 91.6
Potri.001G424600 Populus trichocarpa HOM05D005684 ORTHO05D007427 4.1e-131 471.5 249 92.0
ClCG10G005500 Citrullus lanatus HOM05D005684 ORTHO05D007427 5.4e-131 471.1 251 90.8
Medtr7g033650 Medicago truncatula HOM05D005684 ORTHO05D007427 1.2e-130 469.9 250 92.4
CsaV3_3G005220 Cucumis sativus L. HOM05D005684 ORTHO05D007427 1.6e-130 469.5 251 90.4
FvH4_3g22390 Fragaria vesca HOM05D005684 ORTHO05D007427 5.9e-130 467.6 251 90.0
Ciclev10009283m.g Citrus clementina HOM05D005684 ORTHO05D007427 7.8e-130 467.2 251 90.4
Manes.15G073300 Manihot esculenta HOM05D005684 ORTHO05D007427 7.8e-130 467.2 249 90.8
Cpa.g.sc97.28 Carica papaya HOM05D005684 ORTHO05D007427 1.0e-129 466.8 251 91.2
Actinidia35335 Actinidia chinensis HOM05D005684 ORTHO05D007427 1.3e-129 466.5 250 90.8
MD03G1205400 Malus domestica HOM05D005684 ORTHO05D007427 1.3e-129 466.5 251 90.4
FAN21G0196 Fragaria x ananassa HOM05D005684 ORTHO05D007427 1.7e-129 466.1 251 89.6
Lj1A870G92 Lonicera japonica HOM05D005684 ORTHO05D007427 2.3e-129 465.7 250 90.8
Dinv22273 Davidia involucrata HOM05D005684 ORTHO05D007427 2.9e-129 465.3 250 90.0
RcHm_v2.0_Chr5g0039061 Rosa chinensis HOM05D005684 ORTHO05D007427 2.9e-129 465.3 251 89.6
Sed0015085 Sechium edule HOM05D005684 ORTHO05D007427 1.1e-128 463.4 251 89.6
QL09p032912 Quercus lobata HOM05D005684 ORTHO05D007427 1.5e-128 463.0 246 92.7
MD11G1221300 Malus domestica HOM05D005684 ORTHO05D007427 1.9e-128 462.6 249 90.0
Actinidia10725 Actinidia chinensis HOM05D005684 ORTHO05D007427 2.5e-128 462.2 250 90.4
QL08p011467 Quercus lobata HOM05D005684 ORTHO05D007427 3.3e-128 461.8 246 93.1
FAN11G1729 Fragaria x ananassa HOM05D005684 ORTHO05D007427 9.5e-128 460.3 259 87.3
QL08p011589 Quercus lobata HOM05D005684 ORTHO05D007427 9.5e-128 460.3 246 92.7
PGR031G1629 Punica granatum HOM05D005684 ORTHO05D007427 1.6e-127 459.5 251 89.6
Aqoxy7G03212 Aquilegia oxysepala HOM05D005684 ORTHO05D007427 2.1e-127 459.1 250 90.4
Lsat_1_v5_gn_7_109480 Lactuca sativa HOM05D005684 ORTHO05D007427 4.7e-127 458.0 250 88.4
Sc16g0006290 Simmondsia chinensis HOM05D005684 ORTHO05D007427 4.7e-127 458.0 250 89.6
Gohir.D01G065700 Gossypium hirsutum HOM05D005684 ORTHO05D007427 6.1e-127 457.6 251 90.4
Gorai.002G087600 Gossypium raimondii HOM05D005684 ORTHO05D007427 6.1e-127 457.6 251 90.4
GSVIVG01037615001 Vitis vinifera HOM05D005684 ORTHO05D007427 6.1e-127 457.6 249 90.8
ECA236G3763 Erigeron canadensis HOM05D005684 ORTHO05D007427 8.0e-127 457.2 250 88.4
Gohir.A01G078600 Gossypium hirsutum HOM05D005684 ORTHO05D007427 1.8e-126 456.1 251 90.0
Eucgr.F03458 Eucalyptus grandis HOM05D005684 ORTHO05D007427 6.8e-126 454.1 251 89.2
HanXRQChr11g0336331 Helianthus annuus HOM05D005684 ORTHO05D007427 6.8e-126 454.1 250 88.0
Peaxi162Scf00387g00210 Petunia axillaris HOM05D005684 ORTHO05D007427 6.8e-126 454.1 250 86.4
Solyc10g006320.3 Solanum lycopersicum HOM05D005684 ORTHO05D007427 6.8e-126 454.1 250 86.4
Sopen10g002270 Solanum pennellii HOM05D005684 ORTHO05D007427 6.8e-126 454.1 250 86.8
PGSC0003DMG400014423 Solanum tuberosum HOM05D005684 ORTHO05D007427 8.9e-126 453.8 250 86.4
Nitab4.5_0005048g0050 Nicotiana tabacum HOM05D005684 ORTHO05D007427 1.2e-125 453.4 250 86.0
ATR0749G094 Amborella trichopoda HOM05D005684 ORTHO05D007427 2.6e-125 452.2 249 88.8
TAR383G0098 Trochodendron aralioides HOM05D005684 ORTHO05D007427 2.6e-125 452.2 250 89.2
MSTRG.12968 Avicennia marina HOM05D005684 ORTHO05D007427 4.4e-125 451.4 250 87.2
Cc05_g13580 Coffea canephora HOM05D005684 ORTHO05D007427 5.8e-125 451.1 250 88.0
THA.LOC104817661 Tarenaya hassleriana HOM05D005684 ORTHO05D007427 9.8e-125 450.3 251 86.1
PSO170G3986 Papaver somniferum HOM05D005684 ORTHO05D007427 1.7e-124 449.5 245 91.4
Thhalv10014489m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 2.2e-124 449.1 251 85.7
Duzib170G0103 Durio zibethinus HOM05D005684 ORTHO05D007427 4.9e-124 448.0 251 88.4
Migut.H01837 Erythranthe guttata HOM05D005684 ORTHO05D007427 4.9e-124 448.0 250 86.8
vmacro09729 Vaccinium macrocarpon HOM05D005684 ORTHO05D007427 8.3e-124 447.2 267 83.9
PSO017G1132 Papaver somniferum HOM05D005684 ORTHO05D007427 1.1e-123 446.8 245 90.6
Carub.0007s1380 Capsella rubella HOM05D005684 ORTHO05D007427 1.4e-123 446.4 249 85.1
AL7G25790 Arabidopsis lyrata HOM05D005684 ORTHO05D007427 9.2e-123 443.7 251 84.1
AT4G27040 Arabidopsis thaliana HOM05D005684 ORTHO05D007427 9.2e-123 443.7 251 84.1
COL.COLO4_09643 Corchorus olitorius HOM05D005684 ORTHO05D007427 1.2e-122 443.4 251 88.8
Nn8g40268 Nelumbo nucifera HOM05D005684 ORTHO05D007427 1.2e-122 443.4 250 86.0
Sabra16G0288400 Salix brachista HOM05D005684 ORTHO05D007427 1.6e-122 443.0 296 77.4
CARHR234690 Cardamine hirsuta HOM05D005684 ORTHO05D007427 3.5e-122 441.8 251 84.1
MBI15_g26086_MAGBIO Magnolia biondii HOM05D005684 ORTHO05D007427 4.6e-122 441.4 247 88.3
Cfa020373 Carpinus fangiana HOM05D005684 ORTHO05D007427 6.0e-122 441.0 230 92.2
Aa31LG3G10790 Aethionema arabicum HOM05D005684 ORTHO05D007427 1.3e-121 439.9 256 83.6
Thhalv10026070m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 1.1e-120 436.8 251 83.3
Sp7g25020 Schrenkiella parvula HOM05D005684 ORTHO05D007427 1.1e-120 436.8 251 83.7
BcaC06g32714 Brassica carinata HOM05D005684 ORTHO05D007427 1.5e-120 436.4 251 83.3
BolC7t46008H Brassica oleracea HOM05D005684 ORTHO05D007427 1.5e-120 436.4 251 83.3
A03p57030 Brassica napus HOM05D005684 ORTHO05D007427 2.5e-120 435.6 251 83.3
C07p55040 Brassica napus HOM05D005684 ORTHO05D007427 2.5e-120 435.6 251 83.3
BraA03t14772Z Brassica rapa HOM05D005684 ORTHO05D007427 4.3e-120 434.9 251 82.9
RhsimUnG0251500 Rhododendron simsii HOM05D001404 ORTHO05D002309 4.3e-120 434.9 233 91.8
A01p18200 Brassica napus HOM05D005684 ORTHO05D007427 9.5e-120 433.7 251 82.9
BraA01t01775Z Brassica rapa HOM05D005684 ORTHO05D007427 9.5e-120 433.7 251 82.9
SEGI_16862 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 2.1e-119 432.6 251 83.7
Haze_09656 Corylus avellana HOM05D005684 ORTHO05D007427 3.6e-119 431.8 246 87.0
Aa31LG5G10350 Aethionema arabicum HOM05D005684 ORTHO05D007427 4.0e-118 428.3 298 71.5
SGA_v2.0_scaffold9G05066 Striga asiatica HOM05D005684 ORTHO05D007427 6.8e-118 427.6 269 80.3
BcaC09g50622 Brassica carinata HOM05D005684 ORTHO05D007427 8.9e-118 427.2 251 82.1
CAN.G1781.5 Capsicum annuum HOM05D005684 ORTHO05D007427 4.4e-117 424.9 233 86.3
Os09g0529700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 3.2e-115 418.7 250 81.2
Os11g0670700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 4.6e-114 414.8 250 80.4
Nitab4.5_0001393g0150 Nicotiana tabacum HOM05D005684 ORTHO05D007427 1.1e-112 410.2 250 79.2
SMO232G0102 Selaginella moellendorffii HOM05D005684 ORTHO05D007427 6.8e-110 401.0 245 77.1
Oeu062595.4 Olea europaea HOM05D005684 ORTHO05D007427 1.5e-109 399.8 358 60.1
Hma1.2p1_0673F.1_g201210 Hydrangea macrophylla HOM05D005684 ORTHO05D007427 5.8e-109 397.9 255 79.2
Mapoly0007s0150 Marchantia polymorpha HOM05D005684 ORTHO05D007427 1.1e-104 383.6 242 74.4
CDE08G1370 Ceratophyllum demersum HOM05D005684 ORTHO05D007427 1.5e-104 383.3 243 77.8
Prupe.4G210400 Prunus persica HOM05D005684 ORTHO05D007427 1.5e-104 383.3 251 77.7
Pp3c10_13560 Physcomitrium patens HOM05D005684 ORTHO05D007427 2.5e-104 382.5 241 77.6
BolC1t02253H Brassica oleracea HOM05D005684 ORTHO05D007427 3.3e-104 382.1 223 80.7
HPP92_001822 Vanilla planifolia HOM05D005684 ORTHO05D007427 1.2e-103 380.2 212 88.2
AUR62020473 Chenopodium quinoa HOM05D005684 ORTHO05D007427 2.1e-98 362.8 250 72.8
BolC1t02251H Brassica oleracea HOM05D005684 ORTHO05D007427 6.6e-97 357.8 238 73.9
EL10Ac4g07848 Beta vulgaris HOM05D005684 ORTHO05D007427 3.3e-96 355.5 250 73.6
Psat5g180640 Pisum sativum HOM05D005684 ORTHO05D007427 4.0e-94 348.6 181 92.3
SEGI_13452 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 1.3e-92 343.6 206 83.0
FAN16G3416 Fragaria x ananassa HOM05D005684 ORTHO05D007427 2.9e-92 342.4 194 87.6
CBR_g28043 Chara braunii HOM05D005684 ORTHO05D007427 7.1e-91 337.8 245 67.8
AUR62015738 Chenopodium quinoa HOM05D005684 ORTHO05D007427 3.4e-85 318.9 324 55.6
Zm00001eb103240 Zea mays HOM05D005684 ORTHO05D007427 1.2e-82 310.5 187 82.4
Ah.06g186400 Amaranthus hybridus HOM05D005684 ORTHO05D007427 3.2e-75 285.8 208 70.2
MELO3C032233.2 Cucumis melo HOM05D005684 ORTHO05D007427 3.2e-75 285.8 151 92.1
C01p23200 Brassica napus HOM05D005684 ORTHO05D007427 8.7e-73 277.7 185 73.0
Cre17.g706650 Chlamydomonas reinhardtii HOM05D005684 ORTHO05D007427 3.3e-72 275.8 245 53.9
Duzib213G0140 Durio zibethinus HOM05D005684 ORTHO05D007427 4.5e-69 265.4 211 68.7
MCO16G427 Micromonas commoda HOM05D005684 ORTHO05D007427 2.1e-66 256.5 254 50.4
AagrBONN_evm.TU.Sc2ySwM_228.646 Anthoceros agrestis HOM05D005684 ORTHO05D007427 6.7e-65 251.5 152 78.9
CAN.G915.10 Capsicum annuum HOM05D005684 ORTHO05D007427 4.5e-61 238.8 197 61.9
Thecc.07G042900 Theobroma cacao HOM05D005684 ORTHO05D007427 1.3e-60 237.3 251 56.2
TAR626G1586 Trochodendron aralioides HOM05D005684 ORTHO05D007427 9.1e-54 214.5 120 87.5
TAR626G0395 Trochodendron aralioides HOM05D005684 ORTHO05D007427 1.8e-49 200.3 99 98.0
GSVIVG01037619001 Vitis vinifera HOM05D005684 ORTHO05D007427 2.3e-49 199.9 118 82.2
MELO3C031910.2 Cucumis melo HOM05D005684 ORTHO05D007427 2.2e-47 193.4 101 90.1
PRCOL_00005955 Prasinoderma coloniale HOM05D005684 ORTHO05D007427 3.7e-47 192.6 249 45.4
PGR142G1953 Punica granatum HOM05D005684 ORTHO05D007427 2.2e-44 183.3 101 85.1
Cfa026637 Carpinus fangiana HOM05D005684 ORTHO05D007427 8.8e-41 171.4 257 36.2
C01p23160 Brassica napus HOM05D005684 ORTHO05D007427 3.7e-39 166.0 116 69.8
Dinv40739 Davidia involucrata HOM05D005684 ORTHO05D007427 6.3e-39 165.2 158 60.8
Prupe.5G052500 Prunus persica HOM05D005684 ORTHO05D007427 3.1e-38 162.9 100 79.0
CAN.G1192.5 Capsicum annuum HOM05D005684 ORTHO05D000076 1.2e-29 134.4 124 60.5
SEGI_35638 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 7.3e-19 98.6 68 66.2
HanXRQChr09g0268041 Helianthus annuus HOM05D005684 ORTHO05D007427 1.0e-17 94.7 101 49.5
Actinidia05107 Actinidia chinensis HOM05D006458 ORTHO05D008433 2.0e-16 90.5 137 45.3
AagrBONN_evm.TU.Sc2ySwM_340.2023 Anthoceros agrestis HOM05D005684 ORTHO05D007427 3.2e-14 83.2 55 74.5
Hma1.2p1_0212F.1_g090110 Hydrangea macrophylla HOM05D005684 ORTHO05D048316 5.4e-14 82.4 44 81.8
SEGI_36060 Sequoiadendron giganteum HOM05D005684 ORTHO05D383802 5.9e-13 79.0 56 69.6
GSVIVG01037618001 Vitis vinifera HOM05D005684 ORTHO05D048316 5.2e-09 65.9 30 93.3
Zm00001eb057030 Zea mays HOM05D000424 ORTHO05D000355 3.4e-08 63.2 55 63.6


User provided reference genes

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