Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.G8ZYC2 Arachis hypogaea HOM05D000533 ORTHO05D001069 2.1e-85 318.9 155 100.0
FvH4_6g41620 Fragaria vesca HOM05D000533 ORTHO05D001069 1.9e-41 172.9 85 96.5
FAN01G2373 Fragaria x ananassa HOM05D000533 ORTHO05D001069 1.9e-41 172.9 85 96.5
Lalb_Chr07g0191821 Lupinus albus HOM05D000533 ORTHO05D001069 1.9e-41 172.9 85 95.3
arahy.Tifrunner.gnm1.ann1.EMA6B0 Arachis hypogaea HOM05D000533 ORTHO05D001069 1.2e-40 170.2 85 95.3
PGR111G0062 Punica granatum HOM05D000533 ORTHO05D001069 2.7e-40 169.1 85 94.1
QL93p0141_0008 Quercus lobata HOM05D000533 ORTHO05D001069 3.5e-40 168.7 85 94.1
LjContig00318g0022363 Lotus japonicus HOM05D000533 ORTHO05D001069 1.7e-39 166.4 85 92.9
LjContig00319g0004717 Lotus japonicus HOM05D000533 ORTHO05D001069 1.7e-39 166.4 85 92.9
arahy.Tifrunner.gnm1.ann1.V68ACY Arachis hypogaea HOM05D000533 ORTHO05D001069 2.3e-39 166.0 79 98.7
Medtr4g006100 Medicago truncatula HOM05D000533 ORTHO05D001069 2.3e-39 166.0 85 92.9
ATR0924G001 Amborella trichopoda HOM05D000533 ORTHO05D001069 3.0e-39 165.6 85 92.9
Gohir.1Z049694 Gossypium hirsutum HOM05D000533 ORTHO05D001069 5.1e-39 164.9 85 90.6
Gohir.D11G334151 Gossypium hirsutum HOM05D000533 ORTHO05D001069 6.6e-39 164.5 85 90.6
Psat0s6989g0240 Pisum sativum HOM05D000533 ORTHO05D001069 8.7e-39 164.1 85 90.6
Psat1g050080 Pisum sativum HOM05D000533 ORTHO05D001069 8.7e-39 164.1 85 90.6
Psat3g095040 Pisum sativum HOM05D000533 ORTHO05D001069 8.7e-39 164.1 85 90.6
Psat7g150960 Pisum sativum HOM05D000533 ORTHO05D001069 8.7e-39 164.1 85 90.6
Medtr6g042200 Medicago truncatula HOM05D000533 ORTHO05D001069 1.9e-38 162.9 85 91.8
Eucgr.K01620 Eucalyptus grandis HOM05D000533 ORTHO05D001069 3.3e-38 162.2 84 92.9
Peaxi162Scf00030g02114 Petunia axillaris HOM05D000533 ORTHO05D001069 4.3e-38 161.8 88 88.6
Psat7g126800 Pisum sativum HOM05D000533 ORTHO05D001069 4.3e-38 161.8 85 89.4
arahy.Tifrunner.gnm1.ann1.URY1CV Arachis hypogaea HOM05D000533 ORTHO05D011117 7.3e-38 161.0 78 98.7
Solyc00g500087.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 9.6e-38 160.6 85 89.4
Solyc00g500124.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 9.6e-38 160.6 85 89.4
Solyc00g500192.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 9.6e-38 160.6 85 89.4
PGSC0003DMG401008783 Solanum tuberosum HOM05D000533 ORTHO05D001069 1.6e-37 159.8 85 88.2
MELO3C027054.2 Cucumis melo HOM05D000533 ORTHO05D001069 2.1e-37 159.5 85 88.2
Sed0014804 Sechium edule HOM05D000533 ORTHO05D001069 2.1e-37 159.5 85 89.4
SalBow1G1175 Salvia bowleyana HOM05D000533 ORTHO05D001069 4.8e-37 158.3 85 89.4
RhsimPtG0005000 Rhododendron simsii HOM05D000533 ORTHO05D001069 8.1e-37 157.5 85 89.4
AL9U11960 Arabidopsis lyrata HOM05D000533 ORTHO05D001069 1.1e-36 157.1 85 87.1
ATCG01110 Arabidopsis thaliana HOM05D000533 ORTHO05D001069 1.1e-36 157.1 85 87.1
EL10Ac1g02290 Beta vulgaris HOM05D000533 ORTHO05D001069 1.1e-36 157.1 85 87.1
EL10Ac6g14289 Beta vulgaris HOM05D000533 ORTHO05D001069 1.1e-36 157.1 85 87.1
TAR625G0265 Trochodendron aralioides HOM05D000533 ORTHO05D001069 1.4e-36 156.8 85 88.2
ATR0043G018 Amborella trichopoda HOM05D000533 ORTHO05D001069 1.8e-36 156.4 85 88.2
Hma1.2p1_0660F.1_g197430 Hydrangea macrophylla HOM05D000533 ORTHO05D001069 1.8e-36 156.4 85 88.2
C05p53840 Brassica napus HOM05D000533 ORTHO05D001069 2.4e-36 156.0 85 85.9
C07p33470 Brassica napus HOM05D000533 ORTHO05D001069 2.4e-36 156.0 85 85.9
C09p40300 Brassica napus HOM05D000533 ORTHO05D001069 2.4e-36 156.0 85 85.9
BolSC37t60797H Brassica oleracea HOM05D000533 ORTHO05D001069 2.4e-36 156.0 85 85.9
BolSC44t60826H Brassica oleracea HOM05D000533 ORTHO05D001069 2.4e-36 156.0 85 85.9
BolSC45t60905H Brassica oleracea HOM05D000533 ORTHO05D001069 2.4e-36 156.0 85 85.9
BraSC143t45656Z Brassica rapa HOM05D000533 ORTHO05D001069 2.4e-36 156.0 85 85.9
BraSC25t45914Z Brassica rapa HOM05D000533 ORTHO05D001069 2.4e-36 156.0 85 85.9
BraSC59t46530Z Brassica rapa HOM05D000533 ORTHO05D001069 2.4e-36 156.0 85 85.9
BraSC59t46554Z Brassica rapa HOM05D000533 ORTHO05D001069 2.4e-36 156.0 85 85.9
Sabra10G0056200 Salix brachista HOM05D000533 ORTHO05D001069 3.1e-36 155.6 85 88.2
SabraPtG0005900 Salix brachista HOM05D000533 ORTHO05D001069 3.1e-36 155.6 85 88.2
AUR62028573 Chenopodium quinoa HOM05D000533 ORTHO05D001069 5.3e-36 154.8 85 87.1
Ah.10g027260 Amaranthus hybridus HOM05D000533 ORTHO05D001069 6.9e-36 154.5 85 85.9
Ah.10g027700 Amaranthus hybridus HOM05D000533 ORTHO05D001069 6.9e-36 154.5 85 85.9
DCAR_032542 Daucus carota HOM05D000533 ORTHO05D001069 1.5e-35 153.3 85 85.9
Lju5009C0T5 Lonicera japonica HOM05D000533 ORTHO05D001069 1.5e-35 153.3 85 85.9
AUR62015545 Chenopodium quinoa HOM05D000533 ORTHO05D001069 4.5e-35 151.8 85 84.7
ECA074G0013 Erigeron canadensis HOM05D000533 ORTHO05D001069 7.6e-35 151.0 85 84.7
HanXRQChr01g0000271 Helianthus annuus HOM05D000533 ORTHO05D001069 7.6e-35 151.0 85 84.7
HanXRQChr02g0059741 Helianthus annuus HOM05D000533 ORTHO05D001069 7.6e-35 151.0 85 84.7
HanXRQChr09g0258481 Helianthus annuus HOM05D000533 ORTHO05D001069 7.6e-35 151.0 85 84.7
HanXRQChr15g0465421 Helianthus annuus HOM05D000533 ORTHO05D001069 7.6e-35 151.0 85 84.7
HanXRQChr15g0465471 Helianthus annuus HOM05D000533 ORTHO05D001069 7.6e-35 151.0 85 84.7
HanXRQChr17g0569711 Helianthus annuus HOM05D000533 ORTHO05D001069 7.6e-35 151.0 85 84.7
HanXRQChr17g0569761 Helianthus annuus HOM05D000533 ORTHO05D001069 7.6e-35 151.0 85 84.7
HanXRQCPg0580331 Helianthus annuus HOM05D000533 ORTHO05D001069 7.6e-35 151.0 85 84.7
BolSC29t60550H Brassica oleracea HOM05D000533 ORTHO05D001069 9.9e-35 150.6 87 83.9
PSO548G0122 Papaver somniferum HOM05D000533 ORTHO05D001069 9.9e-35 150.6 85 84.7
unitig_91.g26523 Utricularia gibba HOM05D000533 ORTHO05D001069 1.7e-34 149.8 85 83.5
Sed0009234 Sechium edule HOM05D000533 ORTHO05D001069 2.2e-34 149.4 79 89.9
EL10Ac9g21011 Beta vulgaris HOM05D000533 ORTHO05D001069 2.9e-34 149.1 80 87.5
Lsat_1_v5_gn_9_49240 Lactuca sativa HOM05D000533 ORTHO05D001069 2.9e-34 149.1 85 83.5
Psat0s1920g0160 Pisum sativum HOM05D000533 ORTHO05D001069 4.9e-34 148.3 85 83.5
AUR62043262 Chenopodium quinoa HOM05D000533 ORTHO05D001069 8.4e-34 147.5 85 83.5
HanXRQChr09g0251511 Helianthus annuus HOM05D000533 ORTHO05D001069 8.4e-34 147.5 85 82.4
Medtr0002s0150 Medicago truncatula HOM05D000533 ORTHO05D001069 1.9e-33 146.4 85 78.8
C09p40120 Brassica napus HOM05D000890 ORTHO05D000697 2.4e-33 146.0 89 78.7
Solyc10g047400.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 5.4e-33 144.8 87 75.9
Lsat_1_v5_gn_5_821 Lactuca sativa HOM05D000533 ORTHO05D001069 7.1e-33 144.4 87 79.3
Eucgr.B00847 Eucalyptus grandis HOM05D000533 ORTHO05D001069 9.3e-33 144.1 84 84.5
vmacro22393 Vaccinium macrocarpon HOM05D000533 ORTHO05D001069 1.2e-32 143.7 79 86.1
vmacro22419 Vaccinium macrocarpon HOM05D000533 ORTHO05D001069 1.2e-32 143.7 79 86.1
Lsat_1_v5_gn_4_33860 Lactuca sativa HOM05D000533 ORTHO05D001069 1.6e-32 143.3 85 81.2
Nitab4.5_0007400g0040 Nicotiana tabacum HOM05D000533 ORTHO05D001069 6.0e-32 141.4 87 80.5
SEGI_11816 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 1.3e-31 140.2 85 78.8
SEGI_26586 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 1.3e-31 140.2 85 78.8
SEGI_36880 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 1.3e-31 140.2 85 78.8
SEGI_41539 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 1.3e-31 140.2 85 78.8
C02p28810 Brassica napus HOM05D000533 ORTHO05D001069 6.7e-31 137.9 93 75.3
Mapoly0048s0043 Marchantia polymorpha HOM05D000533 ORTHO05D001069 3.3e-30 135.6 85 76.5
CSS0030738 Camellia sinensis var. sinensis HOM05D000533 ORTHO05D001069 2.1e-29 132.9 72 88.9
arahy.Tifrunner.gnm1.ann1.1262SD Arachis hypogaea HOM05D000533 ORTHO05D002807 3.1e-28 129.0 61 98.4
FvH4_c3g00020 Fragaria vesca HOM05D000533 ORTHO05D001069 4.0e-28 128.6 65 92.3
Nitab4.5_0001478g0210 Nicotiana tabacum HOM05D000445 ORTHO05D000314 8.4e-26 120.9 96 65.6
Nitab4.5_0006502g0030 Nicotiana tabacum HOM05D000533 ORTHO05D001069 1.1e-25 120.6 65 86.2
BolSC29t60510H Brassica oleracea HOM05D000533 ORTHO05D001069 2.5e-25 119.4 65 83.1
SMO086G0065 Selaginella moellendorffii HOM05D000533 ORTHO05D001069 2.5e-25 119.4 84 70.2
Thecc.01G108100 Theobroma cacao HOM05D000533 ORTHO05D001069 2.5e-25 119.4 61 88.5
BolC2t10601H Brassica oleracea HOM05D000533 ORTHO05D001069 4.2e-25 118.6 64 84.4
BolSC35t60708H Brassica oleracea HOM05D000533 ORTHO05D001069 4.2e-25 118.6 64 84.4
Nn1g08631 Nelumbo nucifera HOM05D000533 ORTHO05D001069 2.1e-24 116.3 63 85.7
HanXRQChr00c0504g0575321 Helianthus annuus HOM05D000533 ORTHO05D001069 2.7e-24 115.9 66 83.3
Gohir.A13G086335 Gossypium hirsutum HOM05D000533 ORTHO05D001069 4.6e-24 115.2 59 89.8
HanXRQChr00c0336g0573701 Helianthus annuus HOM05D000533 ORTHO05D001069 4.6e-24 115.2 64 84.4
CAN.G30.7 Capsicum annuum HOM05D000533 ORTHO05D001069 2.3e-23 112.8 70 75.7
Hma1.2p1_0660F.1_g197440 Hydrangea macrophylla HOM05D000533 ORTHO05D002807 2.3e-23 112.8 61 86.9
Hma1.2p1_2753F.1_g327925 Hydrangea macrophylla HOM05D000533 ORTHO05D002807 2.3e-23 112.8 61 86.9
Migut.D01248 Erythranthe guttata HOM05D000533 ORTHO05D001069 3.0e-23 112.5 85 68.2
Haze_22013 Corylus avellana HOM05D000001 ORTHO05D000003 5.1e-23 111.7 94 62.8
Lj2C1238G35 Lonicera japonica HOM05D000533 ORTHO05D001069 6.7e-23 111.3 61 85.2
Sc02g0003430 Simmondsia chinensis HOM05D000533 ORTHO05D001069 8.7e-23 110.9 67 82.1
Gorai.011G083800 Gossypium raimondii HOM05D000533 ORTHO05D001069 1.5e-22 110.2 81 66.7
GSVIVG01012613001 Vitis vinifera HOM05D000533 ORTHO05D001069 1.9e-22 109.8 63 84.1
Solyc00g500280.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 4.3e-22 108.6 60 81.7
Psat0s1160g0320 Pisum sativum HOM05D000533 ORTHO05D001069 1.6e-21 106.7 117 52.1
Solyc08g022150.2 Solanum lycopersicum HOM05D000533 ORTHO05D001069 2.1e-21 106.3 66 75.8
CAN.G1045.9 Capsicum annuum HOM05D000533 ORTHO05D001069 6.2e-21 104.8 58 86.2
Nitab4.5_0000843g0020 Nicotiana tabacum HOM05D000533 ORTHO05D001069 2.6e-19 99.4 99 59.6
Psat5g037800 Pisum sativum HOM05D000533 ORTHO05D001069 2.6e-19 99.4 52 88.5
MELO3C031837.2 Cucumis melo HOM05D000533 ORTHO05D001069 4.5e-19 98.6 63 73.0
ClCG10G006000 Citrullus lanatus HOM05D000533 ORTHO05D001069 7.6e-19 97.8 60 75.0
COL.COLO4_01565 Corchorus olitorius HOM05D000533 ORTHO05D001069 7.6e-19 97.8 49 91.8
GSVIVG01029925001 Vitis vinifera HOM05D000533 ORTHO05D001069 1.7e-18 96.7 57 84.2
CAN.G127.9 Capsicum annuum HOM05D000533 ORTHO05D001069 5.0e-18 95.1 58 79.3
Sed0015694 Sechium edule HOM05D000533 ORTHO05D001069 1.1e-17 94.0 63 73.0
Lsat_1_v5_gn_9_115440 Lactuca sativa HOM05D000533 ORTHO05D001069 3.2e-17 92.4 64 73.4
Nitab4.5_0000660g0050 Nicotiana tabacum HOM05D000533 ORTHO05D001069 3.2e-17 92.4 55 80.0
Lsat_1_v5_gn_5_65981 Lactuca sativa HOM05D000533 ORTHO05D001069 9.3e-17 90.9 67 73.1
Peaxi162Scf01018g00211 Petunia axillaris HOM05D000533 ORTHO05D001069 2.1e-16 89.7 44 95.5
Gorai.006G101200 Gossypium raimondii HOM05D000533 ORTHO05D001069 4.6e-16 88.6 53 81.1
Nitab4.5_0006409g0060 Nicotiana tabacum HOM05D000533 ORTHO05D001069 6.7e-15 84.7 43 90.7
Peaxi162Scf00654g00052 Petunia axillaris HOM05D000533 ORTHO05D001069 1.9e-14 83.2 79 57.0
Gohir.D08G207450 Gossypium hirsutum HOM05D000533 ORTHO05D001069 1.3e-13 80.5 85 54.1
Nitab4.5_0000003g0640 Nicotiana tabacum HOM05D000533 ORTHO05D001069 4.8e-13 78.6 45 77.8
Psat0s1160g0400 Pisum sativum HOM05D000533 ORTHO05D002807 4.8e-13 78.6 37 100.0
Gohir.A04G053078 Gossypium hirsutum HOM05D000533 ORTHO05D001069 4.1e-12 75.5 85 47.1
A08p24980 Brassica napus HOM05D000533 ORTHO05D001069 2.0e-11 73.2 42 78.6
BraA08t34453Z Brassica rapa HOM05D000533 ORTHO05D001069 2.0e-11 73.2 42 78.6
Gohir.D09G085250 Gossypium hirsutum HOM05D000533 ORTHO05D001069 5.9e-11 71.6 47 74.5
arahy.Tifrunner.gnm1.ann1.840LER Arachis hypogaea HOM05D000533 ORTHO05D002807 7.7e-11 71.2 32 96.9
arahy.Tifrunner.gnm1.ann1.JUM97N Arachis hypogaea HOM05D000533 ORTHO05D001069 1.0e-10 70.9 42 85.7
Atru.chr5.1326 Acer truncatum HOM05D000533 ORTHO05D001069 3.8e-10 68.9 34 94.1
BolSC49t61147H Brassica oleracea HOM05D000533 ORTHO05D001069 3.8e-10 68.9 36 86.1
Gorai.013G076700 Gossypium raimondii HOM05D000533 ORTHO05D001069 1.1e-09 67.4 36 88.9
Sed0022513 Sechium edule HOM05D000533 ORTHO05D001069 1.4e-09 67.0 33 90.9
Gorai.003G071300 Gossypium raimondii HOM05D000533 ORTHO05D001069 1.9e-09 66.6 38 81.6
Solyc11g021237.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 4.2e-09 65.5 40 77.5
Hund28343 Selenicereus undatus HOM05D000533 ORTHO05D001069 2.7e-08 62.8 40 80.0
Hund29094 Selenicereus undatus HOM05D000533 ORTHO05D001069 2.7e-08 62.8 40 80.0
Hund30925 Selenicereus undatus HOM05D000533 ORTHO05D001069 2.7e-08 62.8 40 80.0
CAN.G615.5 Capsicum annuum HOM05D000533 ORTHO05D001069 6.1e-08 61.6 36 77.8
Gorai.011G052200 Gossypium raimondii HOM05D000533 ORTHO05D001069 1.4e-07 60.5 38 76.3
Solyc07g032430.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 3.9e-07 58.9 37 75.7
Oeu012820.1 Olea europaea HOM05D000533 ORTHO05D002807 5.1e-07 58.5 54 53.7
Nitab4.5_0000729g0060 Nicotiana tabacum HOM05D000963 ORTHO05D005131 1.5e-06 57.0 46 60.9
ClCG02G009760 Citrullus lanatus HOM05D001966 ORTHO05D000002 2.0e-06 56.6 48 58.3
Nitab4.5_0002739g0180 Nicotiana tabacum HOM05D001560 ORTHO05D003613 5.7e-06 55.1 59 50.8


User provided reference genes

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