Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.G8H5C8 Arachis hypogaea HOM05D004666 ORTHO05D005822 0.0e+00 2013.8 987 100.0
arahy.Tifrunner.gnm1.ann1.T4KAXF Arachis hypogaea HOM05D004666 ORTHO05D005822 0.0e+00 1879.0 988 94.2
arahy.Tifrunner.gnm1.ann1.WFL2XE Arachis hypogaea HOM05D004666 ORTHO05D005822 0.0e+00 1807.7 987 91.5
arahy.Tifrunner.gnm1.ann1.LSN657 Arachis hypogaea HOM05D004666 ORTHO05D005822 0.0e+00 1771.9 987 90.0
Ca_26672_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 5.5e-288 994.6 1013 54.8
Ca_30723_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 5.5e-288 994.6 1013 54.8
Glyma.10G068100 Glycine max HOM05D004666 ORTHO05D005822 3.0e-286 988.8 1184 48.5
TPR.G35431 Trifolium pratense HOM05D004666 ORTHO05D005822 2.0e-285 986.1 991 55.5
Lalb_Chr02g0155381 Lupinus albus HOM05D004666 ORTHO05D005822 2.0e-282 976.1 1159 49.4
Lj5g0013478 Lotus japonicus HOM05D004666 ORTHO05D005822 9.4e-280 967.2 1074 50.7
Medtr1g060580 Medicago truncatula HOM05D004666 ORTHO05D005822 6.1e-271 937.9 968 54.1
Phvul.011G176600 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 1.2e-266 923.7 1159 47.7
Lj5g0018797 Lotus japonicus HOM05D004666 ORTHO05D005822 1.0e-265 920.6 1006 53.3
VMungo0720G2175 Vigna mungo HOM05D004666 ORTHO05D005822 6.1e-263 911.4 1229 45.6
Psat6g082920 Pisum sativum HOM05D004666 ORTHO05D005822 2.3e-262 909.4 1040 50.7
Phvul.007G229800 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 1.1e-259 900.6 1143 47.4
CiPaw.09G011000 Carya illinoinensis HOM05D004666 ORTHO05D005822 2.8e-223 779.6 962 46.2
Cfa002067 Carpinus fangiana HOM05D004666 ORTHO05D005822 5.4e-219 765.4 1029 45.2
QL07p039593 Quercus lobata HOM05D004666 ORTHO05D005822 5.1e-217 758.8 973 45.6
Dinv21227 Davidia involucrata HOM05D004666 ORTHO05D005822 1.6e-215 753.8 999 44.4
COL.COLO4_15658 Corchorus olitorius HOM05D004666 ORTHO05D005822 7.8e-210 734.9 1039 42.2
Rhsim05G0022800 Rhododendron simsii HOM05D004666 ORTHO05D005822 1.6e-207 727.2 993 44.1
Potri.008G200900 Populus trichocarpa HOM05D004666 ORTHO05D005822 1.8e-206 723.8 978 43.7
Manes.13G012000 Manihot esculenta HOM05D004666 ORTHO05D005822 6.7e-201 705.3 954 43.7
Thecc.01G223300 Theobroma cacao HOM05D004666 ORTHO05D005822 2.6e-197 693.3 949 42.4
GSVIVG01032069001 Vitis vinifera HOM05D004666 ORTHO05D005822 3.2e-195 686.4 914 44.2
Gorai.001G233200 Gossypium raimondii HOM05D004666 ORTHO05D005822 4.2e-195 686.0 975 41.8
TAR365G1212 Trochodendron aralioides HOM05D004666 ORTHO05D005822 7.9e-194 681.8 913 43.8
Gohir.A07G200500 Gossypium hirsutum HOM05D004666 ORTHO05D005822 1.8e-193 680.6 981 41.8
CANSAT54G2995 Cannabis sativa HOM05D004666 ORTHO05D005822 5.6e-192 675.6 938 42.4
RcHm_v2.0_Chr4g0409331 Rosa chinensis HOM05D004666 ORTHO05D005822 1.6e-191 674.1 1109 38.5
Prupe.7G114200 Prunus persica HOM05D004666 ORTHO05D005822 3.7e-191 672.9 1067 39.7
vmacro17219 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 2.4e-190 670.2 1139 37.8
Gohir.D07G206800 Gossypium hirsutum HOM05D004666 ORTHO05D005822 1.7e-188 664.1 975 41.1
FvH4_6g18260 Fragaria vesca HOM05D004666 ORTHO05D005822 2.9e-188 663.3 1087 39.4
TWI34G1071 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 8.4e-188 661.8 965 42.5
Sp1g17360 Schrenkiella parvula HOM05D004666 ORTHO05D005822 2.8e-183 646.7 913 42.3
Thhalv10006802m.g Eutrema salsugineum HOM05D004666 ORTHO05D005822 4.1e-182 642.9 929 40.9
EL10Ac7g16949 Beta vulgaris HOM05D004666 ORTHO05D005822 9.0e-182 641.7 1043 38.4
vmacro22687 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 1.2e-181 641.3 1140 36.8
Oeu040521.1 Olea europaea HOM05D004666 ORTHO05D005822 1.5e-181 641.0 897 42.4
Sed0022470 Sechium edule HOM05D004666 ORTHO05D005822 1.5e-181 641.0 955 39.9
C08p19490 Brassica napus HOM05D004666 ORTHO05D005822 1.0e-180 638.3 947 41.2
BcaB03g12912 Brassica carinata HOM05D004666 ORTHO05D005822 2.2e-180 637.1 907 42.6
MELO3C009457.2 Cucumis melo HOM05D004666 ORTHO05D005822 3.8e-180 636.3 967 40.4
MD09G1081300 Malus domestica HOM05D004666 ORTHO05D005822 3.8e-180 636.3 1041 39.1
BolC8t49572H Brassica oleracea HOM05D004666 ORTHO05D005822 8.5e-180 635.2 931 41.5
CsaV3_3G037120 Cucumis sativus L. HOM05D004666 ORTHO05D005822 1.1e-179 634.8 959 40.7
BraA08t34913Z Brassica rapa HOM05D004666 ORTHO05D005822 1.4e-179 634.4 951 40.3
Carub.0001s1905 Capsella rubella HOM05D004666 ORTHO05D005822 1.2e-178 631.3 917 41.4
A08p29790 Brassica napus HOM05D004666 ORTHO05D005822 2.1e-178 630.6 952 40.0
CARHR020050 Cardamine hirsuta HOM05D004666 ORTHO05D005822 6.7e-177 625.5 922 41.1
A06p15660 Brassica napus HOM05D004666 ORTHO05D005822 9.7e-176 621.7 906 41.3
BraA06t24675Z Brassica rapa HOM05D004666 ORTHO05D005822 9.7e-176 621.7 906 41.3
ClCG10G019140 Citrullus lanatus HOM05D004666 ORTHO05D005822 9.7e-176 621.7 1002 40.0
Atru.chr8.1588 Acer truncatum HOM05D004666 ORTHO05D005822 1.7e-175 620.9 815 43.8
Cc06_g05530 Coffea canephora HOM05D004666 ORTHO05D005822 2.8e-175 620.2 996 39.8
AT1G19485 Arabidopsis thaliana HOM05D004666 ORTHO05D005822 3.7e-175 619.8 920 39.6
MD12G1022600 Malus domestica HOM05D004666 ORTHO05D005822 6.3e-175 619.0 1022 39.1
C05p17890 Brassica napus HOM05D004666 ORTHO05D005822 1.1e-174 618.2 923 40.3
FvH4_7g02500 Fragaria vesca HOM05D004666 ORTHO05D005822 1.8e-174 617.5 1048 38.7
BolC5t30496H Brassica oleracea HOM05D004666 ORTHO05D005822 3.4e-173 613.2 906 40.8
THA.LOC104827512 Tarenaya hassleriana HOM05D004666 ORTHO05D005822 1.1e-171 608.2 912 41.6
AUR62033523 Chenopodium quinoa HOM05D004666 ORTHO05D005822 3.2e-171 606.7 1023 37.3
PGR142G0825 Punica granatum HOM05D004666 ORTHO05D005822 1.8e-169 600.9 938 40.7
Nitab4.5_0000794g0050 Nicotiana tabacum HOM05D004666 ORTHO05D005822 3.9e-169 599.7 922 40.5
Aqoxy3G00997 Aquilegia oxysepala HOM05D004666 ORTHO05D005822 2.6e-168 597.0 1004 38.2
Hund26220 Selenicereus undatus HOM05D004666 ORTHO05D005822 4.4e-168 596.3 1192 34.8
Aa31LG7G4140 Aethionema arabicum HOM05D004666 ORTHO05D005822 5.7e-168 595.9 933 39.7
DCAR_013376 Daucus carota HOM05D004666 ORTHO05D005822 6.3e-167 592.4 943 39.8
TWI73G1120 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 1.1e-166 591.7 937 39.8
Sed0014063 Sechium edule HOM05D004666 ORTHO05D005822 3.1e-166 590.1 1070 36.3
PSO425G0050 Papaver somniferum HOM05D004666 ORTHO05D005822 7.7e-165 585.5 1085 37.2
Ciclev10011197m.g Citrus clementina HOM05D004666 ORTHO05D005822 1.7e-164 584.3 785 42.4
Lj2C133G10 Lonicera japonica HOM05D004666 ORTHO05D005822 1.7e-164 584.3 1077 36.6
PSO384G1605 Papaver somniferum HOM05D004666 ORTHO05D005822 2.2e-164 583.9 1079 36.3
ECA248G3102 Erigeron canadensis HOM05D004666 ORTHO05D005822 3.3e-160 570.1 1085 36.5
FAN06G2408 Fragaria x ananassa HOM05D004666 ORTHO05D005822 4.4e-160 569.7 1057 36.7
HanXRQChr01g0029141 Helianthus annuus HOM05D004666 ORTHO05D005822 5.7e-160 569.3 924 39.5
Sopen09g004490 Solanum pennellii HOM05D004666 ORTHO05D005822 8.2e-159 565.5 995 38.6
Solyc09g009710.4 Solanum lycopersicum HOM05D004666 ORTHO05D005822 1.4e-158 564.7 999 38.9
AL1G32230 Arabidopsis lyrata HOM05D004666 ORTHO05D005822 6.5e-156 555.8 802 41.4
Ah.08g210700 Amaranthus hybridus HOM05D004666 ORTHO05D005822 2.7e-154 550.4 1108 34.7
FAN03G3209 Fragaria x ananassa HOM05D004666 ORTHO05D005822 2.0e-152 544.3 1094 35.7
Lsat_1_v5_gn_1_48480 Lactuca sativa HOM05D004666 ORTHO05D005822 5.7e-152 542.7 913 37.9
Haze_19573 Corylus avellana HOM05D004666 ORTHO05D005822 4.5e-149 533.1 767 42.8
Nitab4.5_0009916g0020 Nicotiana tabacum HOM05D004666 ORTHO05D005822 5.0e-148 529.6 944 37.5
Migut.J00966 Erythranthe guttata HOM05D004666 ORTHO05D005822 6.5e-148 529.3 940 36.6
FAN02G3237 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.2e-146 525.0 834 39.4
MBI17_g35786_MAGBIO Magnolia biondii HOM05D004666 ORTHO05D005822 2.3e-145 520.8 900 37.3
SGA_v2.0_scaffold147G36363 Striga asiatica HOM05D004666 ORTHO05D005822 3.4e-144 516.9 913 36.7
SalBow3G3865 Salvia bowleyana HOM05D004666 ORTHO05D005822 2.4e-142 510.8 931 36.0
RcHm_v2.0_Chr3g0472691 Rosa chinensis HOM05D004666 ORTHO05D005822 9.1e-142 508.8 558 48.0
Peaxi162Scf00015g00639 Petunia axillaris HOM05D004666 ORTHO05D005822 2.7e-141 507.3 974 35.7
ECA248G2596 Erigeron canadensis HOM05D004666 ORTHO05D005822 1.3e-140 505.0 1109 33.5
Sc02g0001000 Simmondsia chinensis HOM05D004666 ORTHO05D005822 2.1e-138 497.7 1012 34.1
Duzib114G0569 Durio zibethinus HOM05D004666 ORTHO05D005822 4.9e-135 486.5 925 36.0
HPP92_015079 Vanilla planifolia HOM05D004666 ORTHO05D005822 1.4e-134 485.0 1216 30.8
Sabra08G0160300 Salix brachista HOM05D004666 ORTHO05D005822 4.9e-127 459.9 678 42.5
Potri.006G036601 Populus trichocarpa HOM05D004666 ORTHO05D005822 3.2e-126 457.2 671 41.4
unitig_749.g14294 Utricularia gibba HOM05D004666 ORTHO05D005822 7.0e-126 456.1 907 33.2
Nn2g14084 Nelumbo nucifera HOM05D004666 ORTHO05D005822 1.3e-124 451.8 692 39.6
Sabra12G0045300 Salix brachista HOM05D004666 ORTHO05D005822 2.3e-124 451.1 709 40.6
FAN05G5602 Fragaria x ananassa HOM05D004666 ORTHO05D005822 3.6e-122 443.7 833 36.4
AUR62028568 Chenopodium quinoa HOM05D004666 ORTHO05D005822 1.7e-116 424.9 829 36.6
Peaxi162Scf00036g00125 Petunia axillaris HOM05D004666 ORTHO05D005822 3.7e-111 407.1 963 32.6
CDE08G1659 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 9.2e-110 402.5 909 30.7
Zm00001eb147330 Zea mays HOM05D004666 ORTHO05D005822 1.2e-101 375.6 602 36.0
Eucgr.K02035 Eucalyptus grandis HOM05D004666 ORTHO05D005822 1.8e-97 361.7 358 51.1
Mapoly0021s0027 Marchantia polymorpha HOM05D004666 ORTHO05D005822 2.1e-85 321.6 867 29.5
arahy.Tifrunner.gnm1.ann1.AE8L4W Arachis hypogaea HOM05D004666 ORTHO05D005822 1.3e-82 312.4 184 88.0
Os01g0858000 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 4.8e-82 310.5 613 33.9
Pp3c1_31470 Physcomitrium patens HOM05D004666 ORTHO05D005822 6.2e-82 310.1 832 29.1
AagrBONN_evm.TU.Sc2ySwM_344.3422 Anthoceros agrestis HOM05D004666 ORTHO05D005822 4.9e-79 300.4 886 27.1
Cpa.g.sc5.49 Carica papaya HOM05D004666 ORTHO05D005822 1.1e-78 299.3 324 47.8
PGSC0003DMG400008959 Solanum tuberosum HOM05D004666 ORTHO05D005822 2.6e-72 278.1 603 36.0
Hma1.2p1_2087F.1_g313760 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.2e-64 252.7 291 47.1
Cpa.g.c36918 Carica papaya HOM05D004666 ORTHO05D005822 3.1e-49 201.4 378 36.2
Rhsim09G0020300 Rhododendron simsii HOM05D004666 ORTHO05D005822 5.3e-49 200.7 420 36.2
Haze_16425 Corylus avellana HOM05D004666 ORTHO05D005822 9.1e-49 199.9 308 41.9
FAN09G1276 Fragaria x ananassa HOM05D004666 ORTHO05D005822 2.0e-48 198.7 227 50.2
FAN05G4874 Fragaria x ananassa HOM05D004666 ORTHO05D005822 7.7e-48 196.8 494 32.6
RcHm_v2.0_Chr3g0472701 Rosa chinensis HOM05D004666 ORTHO05D005822 1.0e-47 196.4 223 48.0
CBR_g38478 Chara braunii HOM05D004666 ORTHO05D005822 2.6e-43 181.8 676 26.3
Hma1.2p1_0084F.1_g043500 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.3e-42 179.5 341 39.6
ATR0820G291 Amborella trichopoda HOM05D004666 ORTHO05D005822 2.2e-42 178.7 395 30.6
ATR0820G266 Amborella trichopoda HOM05D004666 ORTHO05D005822 3.7e-42 177.9 294 37.8
RhsimUnG0189100 Rhododendron simsii HOM05D004666 ORTHO05D005822 4.1e-41 174.5 207 49.3
Hma1.2p1_0084F.1_g043480 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 5.5e-38 164.1 206 44.7
CDE08G0899 Ceratophyllum demersum HOM05D007279 ORTHO05D009212 6.8e-36 157.1 203 39.4
FAN14G5421 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.7e-34 152.5 246 41.1
QL03p004438 Quercus lobata HOM05D004666 ORTHO05D005822 5.4e-33 147.5 278 36.0
SEGI_09998 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 1.2e-32 146.4 131 53.4
Eucgr.L02043 Eucalyptus grandis HOM05D004666 ORTHO05D005822 2.2e-31 142.1 213 42.7
Hma1.2p1_2087F.1_g313780 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.3e-26 126.3 215 36.3
QL03p004414 Quercus lobata HOM05D004666 ORTHO05D005822 8.6e-23 113.6 285 34.0
CSS0049785 Camellia sinensis var. sinensis HOM05D004666 ORTHO05D005822 4.3e-22 111.3 118 52.5
FAN10G4251 Fragaria x ananassa HOM05D004666 ORTHO05D005822 4.3e-22 111.3 531 25.8
SHI23868 Sapria himalayana HOM05D004666 ORTHO05D005822 1.4e-20 106.3 216 36.1
SEGI_32780 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 6.8e-20 104.0 211 37.4
Hma1.2p1_0084F.1_g043490 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 8.3e-18 97.1 113 45.1
CDE08G0815 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 5.9e-16 90.9 208 32.2
Sabra06G0024800 Salix brachista HOM05D004666 ORTHO05D005822 1.5e-14 86.3 198 32.8
Haze_16424 Corylus avellana HOM05D004666 ORTHO05D005822 1.8e-12 79.3 226 33.2
Os02g0307300 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 3.1e-12 78.6 175 32.0
QL04p079053 Quercus lobata HOM05D004666 ORTHO05D005822 1.3e-10 73.2 295 26.1
Sabra16G0037300 Salix brachista HOM05D004666 ORTHO05D017783 2.2e-10 72.4 71 50.7
Os07g0454400 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 1.4e-09 69.7 92 41.3
RcHm_v2.0_Chr7g0223981 Rosa chinensis HOM05D004666 ORTHO05D005822 2.7e-08 65.5 44 63.6
VMungo0464G1806 Vigna mungo HOM05D009237 ORTHO05D010310 2.3e-07 62.4 60 55.0


User provided reference genes

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