Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.G80LMI Arachis hypogaea HOM05D004457 ORTHO05D082520 7.7e-106 387.1 190 100.0
arahy.Tifrunner.gnm1.ann1.PHSJ1F Arachis hypogaea HOM05D000147 ORTHO05D001254 6.5e-12 75.1 34 94.1
Medtr1g088730 Medicago truncatula HOM05D000147 ORTHO05D001254 1.4e-11 73.9 66 51.5
arahy.Tifrunner.gnm1.ann1.KU25FL Arachis hypogaea HOM05D000147 ORTHO05D001254 2.5e-11 73.2 34 91.2
arahy.Tifrunner.gnm1.ann1.9FAL4E Arachis hypogaea HOM05D004457 ORTHO05D005282 2.1e-10 70.1 40 85.0
arahy.Tifrunner.gnm1.ann1.R5JYMV Arachis hypogaea HOM05D004457 ORTHO05D005282 2.1e-10 70.1 40 85.0
LjContig00222g0016666 Lotus japonicus HOM05D004457 ORTHO05D005282 2.7e-10 69.7 40 77.5
Lalb_Chr09g0320121 Lupinus albus HOM05D004457 ORTHO05D005282 2.7e-10 69.7 39 82.1
Lalb_Chr02g0143221 Lupinus albus HOM05D000147 ORTHO05D001254 6.1e-10 68.6 35 80.0
Psat6g165800 Pisum sativum HOM05D000147 ORTHO05D001254 6.1e-10 68.6 85 42.4
Glyma.01G233500 Glycine max HOM05D004457 ORTHO05D005282 7.9e-10 68.2 40 80.0
Eucgr.K00073 Eucalyptus grandis HOM05D004457 ORTHO05D005282 1.0e-09 67.8 55 60.0
Glyma.11G009300 Glycine max HOM05D004457 ORTHO05D005282 2.3e-09 66.6 40 77.5
Ca_10350_v3 Cicer arietinum L. HOM05D000147 ORTHO05D001254 3.0e-09 66.2 38 65.8
arahy.Tifrunner.gnm1.ann1.9V0IYD Arachis hypogaea HOM05D000147 ORTHO05D001254 3.9e-09 65.9 49 57.1
Phvul.002G041000 Phaseolus vulgaris HOM05D004457 ORTHO05D005282 3.9e-09 65.9 40 77.5
Glyma.02G155100 Glycine max HOM05D000147 ORTHO05D001254 8.8e-09 64.7 35 77.1
Glyma.10G019300 Glycine max HOM05D000147 ORTHO05D001254 8.8e-09 64.7 35 77.1
QL09p022526 Quercus lobata HOM05D004457 ORTHO05D005282 1.1e-08 64.3 40 75.0
COL.COLO4_15192 Corchorus olitorius HOM05D004457 ORTHO05D005282 1.5e-08 63.9 37 78.4
Lalb_Chr06g0163411 Lupinus albus HOM05D000147 ORTHO05D001254 1.5e-08 63.9 35 71.4
Thecc.05G219000 Theobroma cacao HOM05D004457 ORTHO05D005282 1.5e-08 63.9 37 78.4
VMungo1215G3184 Vigna mungo HOM05D004457 ORTHO05D005282 1.5e-08 63.9 40 72.5
arahy.Tifrunner.gnm1.ann1.ALLS5L Arachis hypogaea HOM05D000147 ORTHO05D001254 2.0e-08 63.5 35 65.7
Manes.09G128300 Manihot esculenta HOM05D004457 ORTHO05D005282 2.0e-08 63.5 37 78.4
CiPaw.06G035200 Carya illinoinensis HOM05D004457 ORTHO05D005282 2.6e-08 63.2 54 61.1
TPR.G37899 Trifolium pratense HOM05D004457 ORTHO05D005282 2.6e-08 63.2 81 40.7
Sabra13G0073500 Salix brachista HOM05D004457 ORTHO05D005282 3.3e-08 62.8 36 80.6
TWI60G0869 Tripterygium wilfordii HOM05D004457 ORTHO05D005282 3.3e-08 62.8 38 71.1
Atru.chr12.1918 Acer truncatum HOM05D004457 ORTHO05D005282 4.4e-08 62.4 50 64.0
Ca_24434_v3 Cicer arietinum L. HOM05D004457 ORTHO05D005282 4.4e-08 62.4 40 70.0
Prupe.2G328100 Prunus persica HOM05D004457 ORTHO05D005282 4.4e-08 62.4 56 57.1
Medtr1g088750 Medicago truncatula HOM05D000147 ORTHO05D001254 5.7e-08 62.0 47 55.3
TPR.G34000 Trifolium pratense HOM05D000147 ORTHO05D001254 5.7e-08 62.0 48 56.2
Duzib106G1483 Durio zibethinus HOM05D004457 ORTHO05D005282 7.4e-08 61.6 37 75.7
Haze_00385 Corylus avellana HOM05D004457 ORTHO05D005282 9.7e-08 61.2 38 76.3
Glyma.02G155000 Glycine max HOM05D000147 ORTHO05D001254 9.7e-08 61.2 34 67.6
Glyma.10G019400 Glycine max HOM05D000147 ORTHO05D001254 9.7e-08 61.2 34 67.6
VMungo0720G1422 Vigna mungo HOM05D000147 ORTHO05D001254 9.7e-08 61.2 65 47.7
Psat2g189240 Pisum sativum HOM05D004457 ORTHO05D005282 1.3e-07 60.8 40 67.5
Potri.013G079101 Populus trichocarpa HOM05D004457 ORTHO05D005282 1.3e-07 60.8 38 76.3
Cfa016064 Carpinus fangiana HOM05D004457 ORTHO05D005282 1.7e-07 60.5 38 76.3
Ciclev10021193m.g Citrus clementina HOM05D004457 ORTHO05D005282 1.7e-07 60.5 37 73.0
FvH4_7g34140 Fragaria vesca HOM05D004457 ORTHO05D005282 1.7e-07 60.5 40 62.5
Gohir.A02G127500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.2e-07 60.1 37 70.3
Gohir.D03G053500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.2e-07 60.1 37 70.3
Gorai.003G055700 Gossypium raimondii HOM05D004457 ORTHO05D005282 2.2e-07 60.1 37 70.3
Phvul.007G106400 Phaseolus vulgaris HOM05D000147 ORTHO05D001254 2.2e-07 60.1 35 71.4
Psat6g165720 Pisum sativum HOM05D000147 ORTHO05D001254 2.8e-07 59.7 35 71.4
Sed0007489 Sechium edule HOM05D004457 ORTHO05D005282 2.8e-07 59.7 63 52.4
GSVIVG01024347001 Vitis vinifera HOM05D004457 ORTHO05D005282 2.8e-07 59.7 40 67.5
Lj5g0023933 Lotus japonicus HOM05D000147 ORTHO05D001254 3.7e-07 59.3 50 56.0
Potri.013G079201 Populus trichocarpa HOM05D004457 ORTHO05D005282 4.8e-07 58.9 38 73.7
PGR142G0056 Punica granatum HOM05D004457 ORTHO05D005282 4.8e-07 58.9 40 57.5
Ca_10351_v3 Cicer arietinum L. HOM05D000147 ORTHO05D001254 6.3e-07 58.5 35 71.4
MD07G1310300 Malus domestica HOM05D004457 ORTHO05D005282 6.3e-07 58.5 56 51.8
Medtr5g007360 Medicago truncatula HOM05D004457 ORTHO05D005282 6.3e-07 58.5 38 68.4
TAR633G1845 Trochodendron aralioides HOM05D000147 ORTHO05D001254 6.3e-07 58.5 34 64.7
vmacro06531 Vaccinium macrocarpon HOM05D004457 ORTHO05D005282 6.3e-07 58.5 77 44.2
CiPaw.06G035000 Carya illinoinensis HOM05D004457 ORTHO05D005282 8.2e-07 58.2 38 73.7
ClCG09G005990 Citrullus lanatus HOM05D000147 ORTHO05D001254 8.2e-07 58.2 34 64.7
RcHm_v2.0_Chr1g0384491 Rosa chinensis HOM05D004457 ORTHO05D005282 8.2e-07 58.2 40 62.5
Cpa.g.sc43.116 Carica papaya HOM05D004457 ORTHO05D005282 1.1e-06 57.8 37 64.9
MELO3C016015.2 Cucumis melo HOM05D000147 ORTHO05D001254 1.1e-06 57.8 34 64.7
CsaV3_7G029130 Cucumis sativus L. HOM05D000147 ORTHO05D001254 1.1e-06 57.8 34 64.7
Gohir.A08G221660 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.1e-06 57.8 36 69.4
Gohir.D08G241200 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.1e-06 57.8 36 69.4
Gorai.004G256600 Gossypium raimondii HOM05D004457 ORTHO05D005282 1.1e-06 57.8 36 69.4
SalBow4G0372 Salvia bowleyana HOM05D004457 ORTHO05D005282 1.1e-06 57.8 60 48.3
Sed0027983 Sechium edule HOM05D000147 ORTHO05D001254 1.1e-06 57.8 46 47.8
Aqoxy3G02297 Aquilegia oxysepala HOM05D004457 ORTHO05D005282 1.4e-06 57.4 40 67.5
AUR62028201 Chenopodium quinoa HOM05D004457 ORTHO05D005282 1.4e-06 57.4 56 50.0
QL12p027230 Quercus lobata HOM05D000147 ORTHO05D001254 1.4e-06 57.4 35 65.7
Cc02_g00170 Coffea canephora HOM05D004457 ORTHO05D005282 1.8e-06 57.0 40 60.0
FAN01G1413 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.8e-06 57.0 40 62.5
CSS0010073 Camellia sinensis var. sinensis HOM05D000147 ORTHO05D001254 2.4e-06 56.6 46 47.8
CiPaw.06G035100 Carya illinoinensis HOM05D004457 ORTHO05D005282 2.4e-06 56.6 54 57.4
FAN10G1543 Fragaria x ananassa HOM05D004457 ORTHO05D005282 2.4e-06 56.6 38 63.2
FAN28G1138 Fragaria x ananassa HOM05D004457 ORTHO05D005282 2.4e-06 56.6 38 63.2
TWI59G0815 Tripterygium wilfordii HOM05D000147 ORTHO05D001254 2.4e-06 56.6 35 62.9
AUR62002084 Chenopodium quinoa HOM05D004457 ORTHO05D005282 3.1e-06 56.2 37 67.6
Dinv19709 Davidia involucrata HOM05D000147 ORTHO05D001254 3.1e-06 56.2 74 40.5
MD01G1237700 Malus domestica HOM05D004457 ORTHO05D005282 3.1e-06 56.2 40 60.0
Rhsim01G0284000 Rhododendron simsii HOM05D000147 ORTHO05D001254 3.1e-06 56.2 85 36.5
Dinv33035 Davidia involucrata HOM05D000147 ORTHO05D001254 4.1e-06 55.8 46 47.8
Duzib138G0484 Durio zibethinus HOM05D000147 ORTHO05D001254 4.1e-06 55.8 34 61.8
Hma1.2p1_0419F.1_g149440 Hydrangea macrophylla HOM05D004457 ORTHO05D005282 4.1e-06 55.8 39 61.5
COL.COLO4_23369 Corchorus olitorius HOM05D000147 ORTHO05D001254 5.3e-06 55.5 34 61.8
CsaV3_3G050090 Cucumis sativus L. HOM05D004457 ORTHO05D005282 5.3e-06 55.5 37 67.6
Gohir.A11G115000 Gossypium hirsutum HOM05D000147 ORTHO05D001254 5.3e-06 55.5 34 61.8
Gohir.D11G120000 Gossypium hirsutum HOM05D000147 ORTHO05D001254 5.3e-06 55.5 34 64.7
Gorai.007G128700 Gossypium raimondii HOM05D000147 ORTHO05D001254 5.3e-06 55.5 34 64.7
SalBow4G0893 Salvia bowleyana HOM05D004457 ORTHO05D005282 5.3e-06 55.5 41 58.5
EL10Ac3g05054 Beta vulgaris HOM05D004457 ORTHO05D005282 7.0e-06 55.1 37 64.9
Hund21100 Selenicereus undatus HOM05D004457 ORTHO05D005282 7.0e-06 55.1 37 64.9
ClCG09G013110 Citrullus lanatus HOM05D004457 ORTHO05D005282 9.1e-06 54.7 37 64.9
Lsat_1_v5_gn_9_921 Lactuca sativa HOM05D000147 ORTHO05D001254 9.1e-06 54.7 73 38.4
SGA_v2.0_scaffold50G18449 Striga asiatica HOM05D004457 ORTHO05D005282 9.1e-06 54.7 37 64.9
THA.LOC104805712 Tarenaya hassleriana HOM05D004457 ORTHO05D005282 9.1e-06 54.7 36 69.4
Thecc.01G297700 Theobroma cacao HOM05D000147 ORTHO05D001254 9.1e-06 54.7 34 61.8
TAR362G0636 Trochodendron aralioides HOM05D000147 ORTHO05D001254 9.1e-06 54.7 34 61.8


User provided reference genes

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