Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.G5DQ32 Arachis hypogaea HOM05D001486 ORTHO05D031489 1.2e-62 243.0 124 100.0
arahy.Tifrunner.gnm1.ann1.56F275 Arachis hypogaea HOM05D001486 ORTHO05D003845 1.6e-56 222.6 134 88.1
arahy.Tifrunner.gnm1.ann1.JC79MH Arachis hypogaea HOM05D001486 ORTHO05D003845 1.6e-56 222.6 134 88.1
Glyma.05G238700 Glycine max HOM05D001486 ORTHO05D003845 4.3e-41 171.4 118 75.4
Lj4g0000437 Lotus japonicus HOM05D001486 ORTHO05D003845 1.5e-38 162.9 129 69.0
Phvul.002G321100 Phaseolus vulgaris HOM05D001486 ORTHO05D003845 2.2e-37 159.1 124 67.7
VMungo0251G2427 Vigna mungo HOM05D001486 ORTHO05D003845 8.5e-37 157.1 125 65.6
Cfa015023 Carpinus fangiana HOM05D001486 ORTHO05D003845 1.2e-35 153.3 129 61.2
Haze_10882 Corylus avellana HOM05D001486 ORTHO05D003845 8.8e-34 147.1 129 59.7
Glyma.02G085000 Glycine max HOM05D001486 ORTHO05D003845 5.7e-33 144.4 128 63.3
Ciclev10014409m.g Citrus clementina HOM05D001486 ORTHO05D003845 2.2e-32 142.5 131 58.0
QL03p035767 Quercus lobata HOM05D001486 ORTHO05D003845 2.2e-32 142.5 129 61.2
Lalb_Chr04g0258641 Lupinus albus HOM05D001486 ORTHO05D003845 2.8e-32 142.1 128 61.7
Phvul.003G019400 Phaseolus vulgaris HOM05D001486 ORTHO05D003845 2.8e-32 142.1 128 64.1
Lalb_Chr16g0387531 Lupinus albus HOM05D001486 ORTHO05D003845 3.1e-31 138.7 128 65.6
Ca_12547_v3 Cicer arietinum L. HOM05D001486 ORTHO05D003845 5.3e-31 137.9 122 59.8
Psat7g008000 Pisum sativum HOM05D001486 ORTHO05D003845 2.0e-30 136.0 128 56.2
Manes.17G083800 Manihot esculenta HOM05D001486 ORTHO05D003845 3.5e-30 135.2 131 58.8
CiPaw.06G051700 Carya illinoinensis HOM05D001486 ORTHO05D003845 1.0e-29 133.7 128 59.4
Lj2g0001507 Lotus japonicus HOM05D001486 ORTHO05D003845 1.0e-29 133.7 128 60.2
Lalb_Chr10g0095731 Lupinus albus HOM05D001486 ORTHO05D003845 1.0e-29 133.7 128 60.9
Eucgr.G02107 Eucalyptus grandis HOM05D001486 ORTHO05D003845 2.9e-29 132.1 132 56.8
Lalb_Chr09g0330901 Lupinus albus HOM05D001486 ORTHO05D003845 5.5e-28 127.9 132 60.6
Medtr8g105270 Medicago truncatula HOM05D001486 ORTHO05D003845 5.5e-28 127.9 132 55.3
Medtr1g032110 Medicago truncatula HOM05D001486 ORTHO05D003845 1.2e-27 126.7 134 53.7
Ca_17256_v3 Cicer arietinum L. HOM05D001486 ORTHO05D003845 2.7e-27 125.6 87 71.3
Ca_17278_v3 Cicer arietinum L. HOM05D001486 ORTHO05D003845 2.7e-27 125.6 87 71.3
Prupe.1G333200 Prunus persica HOM05D001486 ORTHO05D003845 8.0e-27 124.0 124 56.5
GSVIVG01011664001 Vitis vinifera HOM05D001486 ORTHO05D003845 1.0e-26 123.6 133 54.9
Nn3g18359 Nelumbo nucifera HOM05D001486 ORTHO05D003845 1.8e-26 122.9 124 55.6
Atru.chr11.926 Acer truncatum HOM05D001486 ORTHO05D003845 3.0e-26 122.1 132 54.5
Duzib248G0925 Durio zibethinus HOM05D001486 ORTHO05D003845 4.0e-26 121.7 130 56.2
TPR.G20324 Trifolium pratense HOM05D001486 ORTHO05D031489 4.0e-26 121.7 122 55.7
CANSAT01G1659 Cannabis sativa HOM05D001486 ORTHO05D003845 6.7e-26 120.9 92 63.0
Gohir.A01G147000 Gossypium hirsutum HOM05D001486 ORTHO05D003845 8.8e-26 120.6 127 55.1
Hma1.2p1_0705F.1_g206960 Hydrangea macrophylla HOM05D001486 ORTHO05D003845 8.8e-26 120.6 132 51.5
FvH4_4g33570 Fragaria vesca HOM05D001486 ORTHO05D003845 2.0e-25 119.4 125 54.4
FAN12G1020 Fragaria x ananassa HOM05D001486 ORTHO05D003845 2.0e-25 119.4 125 54.4
PGR142G0042 Punica granatum HOM05D001486 ORTHO05D003845 2.6e-25 119.0 128 54.7
FAN17G1742 Fragaria x ananassa HOM05D001486 ORTHO05D003845 3.3e-25 118.6 125 53.6
TAR629G1492 Trochodendron aralioides HOM05D001486 ORTHO05D003845 1.3e-24 116.7 134 53.0
COL.COLO4_16586 Corchorus olitorius HOM05D001486 ORTHO05D003845 2.2e-24 115.9 88 68.2
Dinv07731 Davidia involucrata HOM05D001486 ORTHO05D003845 2.2e-24 115.9 129 51.9
VMungo1215G0637 Vigna mungo HOM05D001486 ORTHO05D003845 2.2e-24 115.9 120 57.5
Thecc.02G292300 Theobroma cacao HOM05D001486 ORTHO05D003845 2.8e-24 115.5 131 56.5
RcHm_v2.0_Chr4g0443071 Rosa chinensis HOM05D001486 ORTHO05D003845 3.7e-24 115.2 123 52.8
MBI19_g37990_MAGBIO Magnolia biondii HOM05D001486 ORTHO05D003845 1.1e-23 113.6 132 52.3
Psat6g046320 Pisum sativum HOM05D001486 ORTHO05D003845 1.1e-23 113.6 116 54.3
FAN22G2360 Fragaria x ananassa HOM05D001486 ORTHO05D003845 1.4e-23 113.2 89 64.0
Dinv10476 Davidia involucrata HOM05D001486 ORTHO05D003845 1.8e-23 112.8 128 50.0
FAN07G1595 Fragaria x ananassa HOM05D001486 ORTHO05D004921 1.8e-23 112.8 125 53.6
Gohir.D01G140100 Gossypium hirsutum HOM05D001486 ORTHO05D003845 1.8e-23 112.8 127 53.5
Potri.008G134600 Populus trichocarpa HOM05D001486 ORTHO05D003845 2.4e-23 112.5 133 49.6
CsaV3_5G036990 Cucumis sativus L. HOM05D001486 ORTHO05D003845 5.3e-23 111.3 89 60.7
CSS0045072 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D003845 9.1e-23 110.5 129 51.2
Gorai.002G172300 Gossypium raimondii HOM05D001486 ORTHO05D003845 9.1e-23 110.5 108 58.3
Nn4g24361 Nelumbo nucifera HOM05D001486 ORTHO05D003845 1.2e-22 110.2 125 48.8
Cc11_g07260 Coffea canephora HOM05D001486 ORTHO05D003845 1.3e-21 106.7 123 48.8
Duzib251G0612 Durio zibethinus HOM05D001486 ORTHO05D003845 1.3e-21 106.7 83 66.3
MD13G1020500 Malus domestica HOM05D001486 ORTHO05D003845 1.3e-21 106.7 131 48.9
Sabra10G0077900 Salix brachista HOM05D001486 ORTHO05D003845 2.2e-21 105.9 108 51.9
MELO3C026439.2 Cucumis melo HOM05D001486 ORTHO05D003845 2.9e-21 105.5 143 45.5
ECA246G3923 Erigeron canadensis HOM05D001486 ORTHO05D003845 2.9e-21 105.5 133 47.4
Nitab4.5_0005571g0010 Nicotiana tabacum HOM05D001486 ORTHO05D003845 2.9e-21 105.5 124 50.0
Gohir.A12G152100 Gossypium hirsutum HOM05D001486 ORTHO05D003845 1.1e-20 103.6 124 49.2
Potri.010G106700 Populus trichocarpa HOM05D001486 ORTHO05D003845 1.5e-20 103.2 130 48.5
MD16G1018900 Malus domestica HOM05D001486 ORTHO05D003845 1.9e-20 102.8 130 48.5
Sed0013183 Sechium edule HOM05D001486 ORTHO05D003845 1.9e-20 102.8 115 50.4
Peaxi162Scf00376g00836 Petunia axillaris HOM05D001486 ORTHO05D003845 3.2e-20 102.1 129 47.3
vmacro10692 Vaccinium macrocarpon HOM05D001486 ORTHO05D003845 3.2e-20 102.1 129 49.6
Gorai.008G168200 Gossypium raimondii HOM05D001486 ORTHO05D003845 4.2e-20 101.7 124 49.2
Lj3C864T11 Lonicera japonica HOM05D001486 ORTHO05D003845 5.5e-20 101.3 88 58.0
SalBow2G3384 Salvia bowleyana HOM05D001486 ORTHO05D003845 5.5e-20 101.3 128 46.1
DCAR_030270 Daucus carota HOM05D001486 ORTHO05D003845 9.4e-20 100.5 119 43.7
Duzib268G0262 Durio zibethinus HOM05D001486 ORTHO05D003845 9.4e-20 100.5 88 63.6
ATR0753G082 Amborella trichopoda HOM05D001486 ORTHO05D003845 2.1e-19 99.4 134 45.5
Aqoxy3G00010 Aquilegia oxysepala HOM05D001486 ORTHO05D003845 2.1e-19 99.4 111 50.5
TAR371G0986 Trochodendron aralioides HOM05D001486 ORTHO05D003845 2.7e-19 99.0 106 50.9
Hma1.2p1_0940F.1_g239580 Hydrangea macrophylla HOM05D001486 ORTHO05D003845 3.6e-19 98.6 76 59.2
ClCG07G005650 Citrullus lanatus HOM05D001486 ORTHO05D003845 8.0e-19 97.4 116 49.1
Actinidia12394 Actinidia chinensis HOM05D001486 ORTHO05D004921 1.0e-18 97.1 129 48.8
Nitab4.5_0005073g0010 Nicotiana tabacum HOM05D001486 ORTHO05D003845 1.8e-18 96.3 124 48.4
Gorai.012G182400 Gossypium raimondii HOM05D001486 ORTHO05D003845 2.3e-18 95.9 126 49.2
DCAR_007328 Daucus carota HOM05D001486 ORTHO05D003845 3.0e-18 95.5 122 46.7
Gorai.009G330200 Gossypium raimondii HOM05D001486 ORTHO05D003845 4.0e-18 95.1 88 59.1
Sopen05g014620 Solanum pennellii HOM05D001486 ORTHO05D003845 5.2e-18 94.7 132 46.2
Gohir.A04G142700 Gossypium hirsutum HOM05D001486 ORTHO05D003845 8.8e-18 94.0 127 48.8
Gohir.D04G186000 Gossypium hirsutum HOM05D001486 ORTHO05D003845 8.8e-18 94.0 126 48.4
THA.LOC104805083 Tarenaya hassleriana HOM05D001486 ORTHO05D003845 8.8e-18 94.0 124 49.2
CAN.G3126.1 Capsicum annuum HOM05D001486 ORTHO05D003845 2.6e-17 92.4 87 56.3
CAN.G74.5 Capsicum annuum HOM05D001486 ORTHO05D003845 2.6e-17 92.4 87 56.3
Gohir.D05G309600 Gossypium hirsutum HOM05D001486 ORTHO05D003845 3.4e-17 92.0 88 58.0
Sc14g0006830 Simmondsia chinensis HOM05D001486 ORTHO05D003845 3.4e-17 92.0 91 47.3
AagrBONN_evm.TU.Sc2ySwM_228.2276 Anthoceros agrestis HOM05D001486 ORTHO05D003845 5.7e-17 91.3 115 45.2
ECA233G3229 Erigeron canadensis HOM05D001486 ORTHO05D003845 7.5e-17 90.9 129 45.0
Gohir.A05G308900 Gossypium hirsutum HOM05D001486 ORTHO05D003845 7.5e-17 90.9 88 56.8
SEGI_09588 Sequoiadendron giganteum HOM05D001486 ORTHO05D003845 2.2e-16 89.4 136 43.4
CAN.G406.6 Capsicum annuum HOM05D001486 ORTHO05D003845 2.8e-16 89.0 126 43.7
Migut.E00480 Erythranthe guttata HOM05D001486 ORTHO05D003845 3.7e-16 88.6 130 45.4
TWI53G1320 Tripterygium wilfordii HOM05D001486 ORTHO05D003845 3.7e-16 88.6 130 45.4
Manes.15G134100 Manihot esculenta HOM05D001486 ORTHO05D003845 6.3e-16 87.8 88 51.1
Solyc05g017860.3 Solanum lycopersicum HOM05D001486 ORTHO05D003845 8.3e-16 87.4 133 44.4
CSS0024241 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D003845 1.1e-15 87.0 74 60.8
Phvul.009G139600 Phaseolus vulgaris HOM05D001486 ORTHO05D031489 1.1e-15 87.0 84 58.3
Peaxi162Scf00337g00815 Petunia axillaris HOM05D001486 ORTHO05D003845 1.4e-15 86.7 85 52.9
Oeu059515.2 Olea europaea HOM05D001486 ORTHO05D003845 2.4e-15 85.9 128 46.1
Solyc04g008010.4 Solanum lycopersicum HOM05D001486 ORTHO05D003845 2.4e-15 85.9 87 51.7
MSTRG.7612 Avicennia marina HOM05D001486 ORTHO05D003845 3.1e-15 85.5 90 52.2
Sopen04g003150 Solanum pennellii HOM05D001486 ORTHO05D003845 3.1e-15 85.5 87 51.7
PGSC0003DMG401029470 Solanum tuberosum HOM05D001486 ORTHO05D003845 3.1e-15 85.5 87 51.7
Nitab4.5_0002803g0060 Nicotiana tabacum HOM05D001486 ORTHO05D003845 4.1e-15 85.1 87 52.9
PSO063G0325 Papaver somniferum HOM05D001486 ORTHO05D003845 4.1e-15 85.1 127 44.1
PSO782G0639 Papaver somniferum HOM05D001486 ORTHO05D003845 4.1e-15 85.1 127 44.1
SGA_v2.0_scaffold151G36774 Striga asiatica HOM05D001486 ORTHO05D003845 4.1e-15 85.1 89 52.8
THA.LOC104824128 Tarenaya hassleriana HOM05D001486 ORTHO05D003845 9.1e-15 84.0 92 55.4
TWI74G0058 Tripterygium wilfordii HOM05D001486 ORTHO05D003845 1.6e-14 83.2 130 44.6
Nitab4.5_0002414g0110 Nicotiana tabacum HOM05D001486 ORTHO05D003845 2.7e-14 82.4 87 52.9
AL5G10790 Arabidopsis lyrata HOM05D001486 ORTHO05D003845 3.5e-14 82.0 84 58.3
HanXRQChr15g0476741 Helianthus annuus HOM05D001486 ORTHO05D003845 5.9e-14 81.3 132 47.7
EL10Ac6g14120 Beta vulgaris HOM05D001486 ORTHO05D003845 7.7e-14 80.9 120 43.3
CDE04G1077 Ceratophyllum demersum HOM05D001486 ORTHO05D003845 7.7e-14 80.9 77 53.2
MSTRG.2129 Avicennia marina HOM05D001486 ORTHO05D003845 1.7e-13 79.7 132 43.2
TWI77G0357 Tripterygium wilfordii HOM05D001486 ORTHO05D003845 1.7e-13 79.7 89 52.8
Actinidia38441 Actinidia chinensis HOM05D001486 ORTHO05D003845 2.2e-13 79.3 95 54.7
Aa31LG2G8200 Aethionema arabicum HOM05D001486 ORTHO05D003845 2.9e-13 79.0 88 51.1
Ah.03g137420 Amaranthus hybridus HOM05D001486 ORTHO05D003845 3.8e-13 78.6 123 42.3
AT2G01690 Arabidopsis thaliana HOM05D001486 ORTHO05D003845 5.0e-13 78.2 84 56.0
Thhalv10003708m.g Eutrema salsugineum HOM05D001486 ORTHO05D003845 5.0e-13 78.2 89 51.7
Sp2g13150 Schrenkiella parvula HOM05D001486 ORTHO05D003845 5.0e-13 78.2 83 54.2
AUR62038470 Chenopodium quinoa HOM05D001486 ORTHO05D003845 6.5e-13 77.8 122 42.6
CARHR144260 Cardamine hirsuta HOM05D001486 ORTHO05D003845 8.5e-13 77.4 93 49.5
Sed0004382 Sechium edule HOM05D001486 ORTHO05D003845 1.1e-12 77.0 104 42.3
A02p32260 Brassica napus HOM05D001486 ORTHO05D003845 2.5e-12 75.9 83 54.2
C02p49860 Brassica napus HOM05D001486 ORTHO05D003845 2.5e-12 75.9 83 54.2
BraA02t08243Z Brassica rapa HOM05D001486 ORTHO05D003845 2.5e-12 75.9 83 54.2
Carub.0005s0064 Capsella rubella HOM05D001486 ORTHO05D003845 2.5e-12 75.9 84 53.6
HanXRQChr08g0212491 Helianthus annuus HOM05D001486 ORTHO05D003845 2.5e-12 75.9 134 42.5
Hund20674 Selenicereus undatus HOM05D001486 ORTHO05D003845 3.2e-12 75.5 107 43.9
Lsat_1_v5_gn_3_53381 Lactuca sativa HOM05D001486 ORTHO05D003845 4.2e-12 75.1 132 41.7
Hund24926 Selenicereus undatus HOM05D001486 ORTHO05D003845 4.2e-12 75.1 88 51.1
TPR.G39980 Trifolium pratense HOM05D001486 ORTHO05D003845 9.4e-12 73.9 46 82.6
BcaC03g17068 Brassica carinata HOM05D001486 ORTHO05D003845 1.2e-11 73.6 107 46.7
BcaC06g31283 Brassica carinata HOM05D001486 ORTHO05D003845 1.2e-11 73.6 143 41.3
BolC2t11065H Brassica oleracea HOM05D001486 ORTHO05D003845 1.2e-11 73.6 107 46.7
AUR62014245 Chenopodium quinoa HOM05D001486 ORTHO05D003845 4.7e-11 71.6 123 41.5
Sed0007618 Sechium edule HOM05D001486 ORTHO05D003845 4.7e-11 71.6 118 37.3
BcaB07g30379 Brassica carinata HOM05D001486 ORTHO05D003845 8.0e-11 70.9 87 50.6
HPP92_024794 Vanilla planifolia HOM05D001486 ORTHO05D003845 8.0e-11 70.9 125 42.4
BcaB07g30727 Brassica carinata HOM05D001486 ORTHO05D003845 1.0e-10 70.5 88 48.9
BcaC04g21556 Brassica carinata HOM05D001486 ORTHO05D003845 1.0e-10 70.5 88 48.9
C09p30410 Brassica napus HOM05D001486 ORTHO05D003845 1.0e-10 70.5 88 48.9
BolC9t55904H Brassica oleracea HOM05D001486 ORTHO05D003845 1.0e-10 70.5 88 48.9
HPP92_024797 Vanilla planifolia HOM05D001486 ORTHO05D003845 1.0e-10 70.5 125 42.4
A09p23570 Brassica napus HOM05D001486 ORTHO05D003845 1.8e-10 69.7 88 48.9
BraA09t37961Z Brassica rapa HOM05D001486 ORTHO05D003845 1.8e-10 69.7 88 48.9
HanXRQChr17g0567281 Helianthus annuus HOM05D001486 ORTHO05D003845 1.8e-10 69.7 129 42.6
MSTRG.13626 Avicennia marina HOM05D001486 ORTHO05D003845 2.3e-10 69.3 102 43.1
Os03g0223700 Oryza sativa ssp. japonica HOM05D001486 ORTHO05D003845 3.0e-10 68.9 125 41.6
Aa31LG1G250 Aethionema arabicum HOM05D001486 ORTHO05D003845 4.0e-10 68.6 90 47.8
Oeu044012.1 Olea europaea HOM05D001486 ORTHO05D003845 4.0e-10 68.6 87 46.0
Zm00001eb399850 Zea mays HOM05D001486 ORTHO05D003845 8.8e-10 67.4 125 42.4
A06p44170 Brassica napus HOM05D001486 ORTHO05D003845 1.5e-09 66.6 138 39.9
BraA06t27292Z Brassica rapa HOM05D001486 ORTHO05D003845 1.5e-09 66.6 138 39.1
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 1.5e-09 66.6 126 38.9
unitig_85.g27249 Utricularia gibba HOM05D001486 ORTHO05D003845 1.5e-09 66.6 126 35.7
Oeu031609.1 Olea europaea HOM05D001486 ORTHO05D003845 2.0e-09 66.2 119 37.8
BcaC06g34133 Brassica carinata HOM05D001486 ORTHO05D003845 2.6e-09 65.9 85 48.2
C07p32330 Brassica napus HOM05D001486 ORTHO05D003845 2.6e-09 65.9 85 48.2
BolC7t43769H Brassica oleracea HOM05D001486 ORTHO05D003845 2.6e-09 65.9 85 48.2
Zm00001eb009100 Zea mays HOM05D001486 ORTHO05D003845 2.6e-09 65.9 125 40.8
SMO134G0279 Selaginella moellendorffii HOM05D001486 ORTHO05D003845 2.2e-08 62.8 113 38.1
Lsat_1_v5_gn_4_12500 Lactuca sativa HOM05D001486 ORTHO05D003845 3.7e-08 62.0 125 38.4
Lsat_1_v5_gn_8_46261 Lactuca sativa HOM05D001486 ORTHO05D003845 1.1e-07 60.5 128 38.3
Pp3c7_100 Physcomitrium patens HOM05D001486 ORTHO05D003845 1.4e-07 60.1 116 40.5
Nitab4.5_0002134g0020 Nicotiana tabacum HOM05D001486 ORTHO05D003845 4.1e-07 58.5 116 41.4
Lj6C738G3 Lonicera japonica HOM05D001486 ORTHO05D007504 7.0e-07 57.8 106 35.8
Pp3c11_22930 Physcomitrium patens HOM05D001486 ORTHO05D003845 2.0e-06 56.2 104 37.5
Nitab4.5_0000198g0160 Nicotiana tabacum HOM05D001486 ORTHO05D003845 4.5e-06 55.1 35 74.3
Pp3c8_19610 Physcomitrium patens HOM05D001486 ORTHO05D003845 5.9e-06 54.7 124 35.5


User provided reference genes

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