Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.G5CYYB Arachis hypogaea HOM05D007974 ORTHO05D010062 1.7e-63 245.7 119 100.0
Glyma.20G156300 Glycine max HOM05D007974 ORTHO05D010062 2.7e-40 168.7 116 69.0
TPR.G17393 Trifolium pratense HOM05D007974 ORTHO05D010062 1.1e-38 163.3 115 68.7
LjContig00238g0026064 Lotus japonicus HOM05D007974 ORTHO05D010062 3.1e-36 155.2 119 63.9
Glyma.10G238250 Glycine max HOM05D007974 ORTHO05D010062 1.2e-35 153.3 104 71.2
Medtr1g101320 Medicago truncatula HOM05D007974 ORTHO05D010062 2.0e-35 152.5 116 62.1
Thecc.03G172000 Theobroma cacao HOM05D007974 ORTHO05D010062 2.2e-34 149.1 111 63.1
VMungo0720G1552 Vigna mungo HOM05D007974 ORTHO05D010062 2.9e-34 148.7 115 60.0
CSS0036952 Camellia sinensis var. sinensis HOM05D007974 ORTHO05D010062 3.8e-34 148.3 108 65.7
Duzib068G0871 Durio zibethinus HOM05D007974 ORTHO05D010062 8.4e-34 147.1 109 63.3
GSVIVG01010603001 Vitis vinifera HOM05D007974 ORTHO05D010062 8.4e-34 147.1 93 72.0
Dinv28469 Davidia involucrata HOM05D007974 ORTHO05D010062 3.2e-33 145.2 95 69.5
Hma1.2p1_0270F.1_g108330 Hydrangea macrophylla HOM05D007974 ORTHO05D010062 3.2e-33 145.2 116 62.1
Potri.012G139700 Populus trichocarpa HOM05D007974 ORTHO05D010062 3.2e-33 145.2 116 57.8
Phvul.007G067200 Phaseolus vulgaris HOM05D007974 ORTHO05D010062 4.2e-33 144.8 115 60.9
CiPaw.04G066500 Carya illinoinensis HOM05D007974 ORTHO05D010062 5.5e-33 144.4 114 59.6
Actinidia34090 Actinidia chinensis HOM05D007974 ORTHO05D010062 9.3e-33 143.7 118 59.3
Actinidia32884 Actinidia chinensis HOM05D007974 ORTHO05D010062 1.6e-32 142.9 106 63.2
Aqoxy5G03970 Aquilegia oxysepala HOM05D007974 ORTHO05D010062 1.6e-32 142.9 104 63.5
Rhsim03G0178300 Rhododendron simsii HOM05D007974 ORTHO05D010062 2.1e-32 142.5 117 57.3
DCAR_018180 Daucus carota HOM05D007974 ORTHO05D010062 2.7e-32 142.1 117 59.0
Nn6g34222 Nelumbo nucifera HOM05D007974 ORTHO05D010062 1.8e-31 139.4 112 58.9
EL10Ac3g05720 Beta vulgaris HOM05D007974 ORTHO05D010062 8.7e-31 137.1 112 57.1
QL09p014742 Quercus lobata HOM05D007974 ORTHO05D010062 1.1e-30 136.7 108 59.3
ECA233G5549 Erigeron canadensis HOM05D007974 ORTHO05D010062 1.5e-30 136.3 108 56.5
HanXRQChr13g0393691 Helianthus annuus HOM05D007974 ORTHO05D010062 1.5e-30 136.3 93 63.4
MBI12_g15161_MAGBIO Magnolia biondii HOM05D007974 ORTHO05D010062 4.3e-30 134.8 108 59.3
Lsat_1_v5_gn_8_6981 Lactuca sativa HOM05D007974 ORTHO05D010062 5.7e-30 134.4 111 55.9
Oeu022576.1 Olea europaea HOM05D007974 ORTHO05D010062 5.7e-30 134.4 91 67.0
Sopen03g004930 Solanum pennellii HOM05D007974 ORTHO05D010062 5.7e-30 134.4 118 55.1
Atru.chr1.506 Acer truncatum HOM05D007974 ORTHO05D010062 9.6e-30 133.7 114 52.6
PGSC0003DMG400014320 Solanum tuberosum HOM05D007974 ORTHO05D010062 9.6e-30 133.7 90 63.3
Cpa.g.sc107.23 Carica papaya HOM05D007974 ORTHO05D010062 1.3e-29 133.3 118 53.4
Solyc03g026090.4 Solanum lycopersicum HOM05D007974 ORTHO05D010062 1.3e-29 133.3 112 56.2
CiPaw.03G103600 Carya illinoinensis HOM05D007974 ORTHO05D010062 2.1e-29 132.5 118 55.1
CAN.G769.6 Capsicum annuum HOM05D007974 ORTHO05D010062 6.2e-29 131.0 116 54.3
MSTRG.8445 Avicennia marina HOM05D007974 ORTHO05D010062 8.2e-29 130.6 92 63.0
Manes.06G145100 Manihot esculenta HOM05D007974 ORTHO05D010062 1.1e-28 130.2 107 57.9
Eucgr.K00232 Eucalyptus grandis HOM05D007974 ORTHO05D010062 1.8e-28 129.4 113 52.2
Eucgr.L02686 Eucalyptus grandis HOM05D007974 ORTHO05D010062 1.8e-28 129.4 113 52.2
Prupe.2G291200 Prunus persica HOM05D007974 ORTHO05D010062 5.3e-28 127.9 116 54.3
Nitab4.5_0002107g0020 Nicotiana tabacum HOM05D007974 ORTHO05D010062 6.9e-28 127.5 115 54.8
Nitab4.5_0004843g0030 Nicotiana tabacum HOM05D007974 ORTHO05D010062 6.9e-28 127.5 93 63.4
COL.COLO4_14276 Corchorus olitorius HOM05D000659 ORTHO05D000505 9.0e-28 127.1 113 52.2
Migut.F01135 Erythranthe guttata HOM05D007974 ORTHO05D010062 9.0e-28 127.1 110 52.7
Ciclev10006787m.g Citrus clementina HOM05D007974 ORTHO05D010062 1.2e-27 126.7 90 61.1
PGR142G2606 Punica granatum HOM05D007974 ORTHO05D010062 2.6e-27 125.6 114 53.5
Sc19g0000020 Simmondsia chinensis HOM05D007974 ORTHO05D010062 4.5e-27 124.8 94 59.6
Cfa008290 Carpinus fangiana HOM05D007974 ORTHO05D010062 5.8e-27 124.4 122 54.1
MD01G1197800 Malus domestica HOM05D007974 ORTHO05D010062 2.9e-26 122.1 113 53.1
Sabra12G0104700 Salix brachista HOM05D000659 ORTHO05D000505 2.9e-26 122.1 92 58.7
Gohir.A12G260000 Gossypium hirsutum HOM05D007974 ORTHO05D010062 6.5e-26 120.9 119 51.3
ATR0757G011 Amborella trichopoda HOM05D007974 ORTHO05D010062 1.1e-25 120.2 108 50.9
RcHm_v2.0_Chr1g0376841 Rosa chinensis HOM05D007974 ORTHO05D010062 2.5e-25 119.0 117 51.3
Sc19g0001640 Simmondsia chinensis HOM05D007974 ORTHO05D010062 2.5e-25 119.0 112 52.7
Gohir.D12G260800 Gossypium hirsutum HOM05D007974 ORTHO05D010062 4.2e-25 118.2 119 50.4
Gorai.008G279400 Gossypium raimondii HOM05D007974 ORTHO05D010062 2.1e-24 115.9 117 50.4
Aa31LG11G1470 Aethionema arabicum HOM05D007974 ORTHO05D010062 3.5e-24 115.2 113 47.8
AL8G38840 Arabidopsis lyrata HOM05D007974 ORTHO05D010062 1.3e-23 113.2 92 54.3
AT5G62065 Arabidopsis thaliana HOM05D007974 ORTHO05D010062 3.0e-23 112.1 92 53.3
C03p64890 Brassica napus HOM05D007974 ORTHO05D010062 3.0e-23 112.1 92 53.3
BolC3t18751H Brassica oleracea HOM05D007974 ORTHO05D010062 3.0e-23 112.1 92 53.3
FAN10G0057 Fragaria x ananassa HOM05D007974 ORTHO05D010062 8.7e-23 110.5 110 48.2
FAN03G0127 Fragaria x ananassa HOM05D007974 ORTHO05D010062 1.5e-22 109.8 118 48.3
FvH4_7g29100 Fragaria vesca HOM05D007974 ORTHO05D010062 1.9e-22 109.4 110 48.2
BcaB02g09619 Brassica carinata HOM05D007974 ORTHO05D010062 2.5e-22 109.0 117 47.9
Thhalv10005335m.g Eutrema salsugineum HOM05D007974 ORTHO05D010062 2.5e-22 109.0 90 53.3
FAN06G2079 Fragaria x ananassa HOM05D007974 ORTHO05D010062 4.3e-22 108.2 110 48.2
THA.LOC104820164 Tarenaya hassleriana HOM05D007974 ORTHO05D010062 7.4e-22 107.5 95 48.4
FAN03G1543 Fragaria x ananassa HOM05D007974 ORTHO05D010062 4.8e-21 104.8 118 47.5
A06p28760 Brassica napus HOM05D007974 ORTHO05D010062 6.3e-21 104.4 113 46.0
BraA06t25817Z Brassica rapa HOM05D007974 ORTHO05D010062 6.3e-21 104.4 113 46.0
Sp2g25230 Schrenkiella parvula HOM05D007974 ORTHO05D010062 1.8e-20 102.8 93 50.5
Carub.0008s2274 Capsella rubella HOM05D007974 ORTHO05D010062 4.1e-20 101.7 114 45.6
CARHR275850 Cardamine hirsuta HOM05D007974 ORTHO05D010062 9.0e-20 100.5 118 44.1
Potri.015G142100 Populus trichocarpa HOM05D007974 ORTHO05D010062 4.2e-17 91.7 86 50.0
Gohir.D11G325151 Gossypium hirsutum HOM05D007974 ORTHO05D010062 1.2e-16 90.1 77 53.2
Actinidia03112 Actinidia chinensis HOM05D007974 ORTHO05D010062 1.1e-14 83.6 111 41.4
Medtr7g073060 Medicago truncatula HOM05D000275 ORTHO05D000181 2.8e-13 79.0 108 38.0
Lsat_1_v5_gn_2_131621 Lactuca sativa HOM05D007974 ORTHO05D010062 1.4e-12 76.6 94 43.6
TAR623G0763 Trochodendron aralioides HOM05D000275 ORTHO05D000181 2.2e-10 69.3 111 36.0
HanXRQChr01g0018461 Helianthus annuus HOM05D000275 ORTHO05D000181 3.8e-10 68.6 110 35.5
Medtr7g072993 Medicago truncatula HOM05D000275 ORTHO05D000181 5.0e-10 68.2 108 34.3
Lsat_1_v5_gn_1_89881 Lactuca sativa HOM05D000275 ORTHO05D000181 8.5e-10 67.4 108 33.3
MSTRG.7190 Avicennia marina HOM05D000275 ORTHO05D003378 1.1e-09 67.0 110 36.4
Medtr1g040335 Medicago truncatula HOM05D000275 ORTHO05D000181 1.1e-09 67.0 107 32.7
Medtr7g073130 Medicago truncatula HOM05D000275 ORTHO05D000181 1.1e-09 67.0 107 32.7
Actinidia31722 Actinidia chinensis HOM05D000275 ORTHO05D000181 1.9e-09 66.2 108 34.3
QL04p000796 Quercus lobata HOM05D000275 ORTHO05D000181 1.9e-09 66.2 111 33.3
CSS0044170 Camellia sinensis var. sinensis HOM05D000275 ORTHO05D000181 2.5e-09 65.9 110 34.5
SEGI_16300 Sequoiadendron giganteum HOM05D000275 ORTHO05D000181 2.5e-09 65.9 119 32.8
Medtr7g073030 Medicago truncatula HOM05D000275 ORTHO05D000181 3.2e-09 65.5 108 34.3
SalBow2G2865 Salvia bowleyana HOM05D000275 ORTHO05D000181 4.2e-09 65.1 112 35.7
CiPaw.15G186600 Carya illinoinensis HOM05D000275 ORTHO05D000181 5.5e-09 64.7 105 36.2
vmacro22473 Vaccinium macrocarpon HOM05D000275 ORTHO05D000181 7.2e-09 64.3 116 35.3
A04p29460 Brassica napus HOM05D000275 ORTHO05D000181 9.4e-09 63.9 114 36.8
BolC4t28177H Brassica oleracea HOM05D000275 ORTHO05D000181 1.2e-08 63.5 114 36.8
BraA04t18413Z Brassica rapa HOM05D000275 ORTHO05D000181 1.6e-08 63.2 114 36.8
Medtr1g040330 Medicago truncatula HOM05D000275 ORTHO05D000181 1.6e-08 63.2 107 31.8
Migut.J00047 Erythranthe guttata HOM05D000275 ORTHO05D000181 2.1e-08 62.8 115 34.8
Rhsim07G0048700 Rhododendron simsii HOM05D000275 ORTHO05D000181 2.7e-08 62.4 110 36.4
SGA_v2.0_scaffold59G20687 Striga asiatica HOM05D000275 ORTHO05D000181 2.7e-08 62.4 110 30.9
Medtr7g073100 Medicago truncatula HOM05D000275 ORTHO05D000181 4.7e-08 61.6 108 32.4
SEGI_03035 Sequoiadendron giganteum HOM05D000275 ORTHO05D000181 4.7e-08 61.6 110 30.9
Haze_03292 Corylus avellana HOM05D000275 ORTHO05D000181 6.1e-08 61.2 119 31.9
SEGI_27859 Sequoiadendron giganteum HOM05D000275 ORTHO05D010062 6.1e-08 61.2 89 37.1
BcaB05g21971 Brassica carinata HOM05D000275 ORTHO05D000181 7.9e-08 60.8 104 32.7
BcaC01g06082 Brassica carinata HOM05D000275 ORTHO05D000181 7.9e-08 60.8 104 33.7
Medtr7g072900 Medicago truncatula HOM05D000275 ORTHO05D000181 7.9e-08 60.8 108 33.3
MSTRG.18946 Avicennia marina HOM05D000275 ORTHO05D000181 1.0e-07 60.5 119 32.8
BcaC02g07458 Brassica carinata HOM05D000275 ORTHO05D000181 1.0e-07 60.5 114 36.0
C04p66750 Brassica napus HOM05D000275 ORTHO05D000181 1.0e-07 60.5 114 36.0
SGA_v2.0_scaffold4G01900 Striga asiatica HOM05D000275 ORTHO05D003378 1.0e-07 60.5 108 31.5
Migut.H00915 Erythranthe guttata HOM05D000275 ORTHO05D000181 1.4e-07 60.1 112 27.7
Sc07g0005920 Simmondsia chinensis HOM05D000275 ORTHO05D000181 1.4e-07 60.1 112 30.4
AUR62006382 Chenopodium quinoa HOM05D000275 ORTHO05D000181 2.3e-07 59.3 115 33.0
Aqoxy4G02395 Aquilegia oxysepala HOM05D000275 ORTHO05D000181 3.0e-07 58.9 113 31.0
MELO3C025219.2 Cucumis melo HOM05D000275 ORTHO05D000181 3.0e-07 58.9 96 38.5
unitig_27.g24888 Utricularia gibba HOM05D000275 ORTHO05D000181 3.0e-07 58.9 113 35.4
Thecc.04G152500 Theobroma cacao HOM05D000275 ORTHO05D000181 3.9e-07 58.5 114 30.7
AUR62029721 Chenopodium quinoa HOM05D000275 ORTHO05D000181 5.1e-07 58.2 115 33.9
Dinv43951 Davidia involucrata HOM05D000275 ORTHO05D000181 5.1e-07 58.2 110 34.5
Duzib151G1053 Durio zibethinus HOM05D000275 ORTHO05D000181 5.1e-07 58.2 115 30.4
Potri.004G086600 Populus trichocarpa HOM05D000275 ORTHO05D000181 5.1e-07 58.2 115 33.0
Ah.08g209490 Amaranthus hybridus HOM05D000275 ORTHO05D000181 6.7e-07 57.8 111 29.7
CSS0001255 Camellia sinensis var. sinensis HOM05D000275 ORTHO05D000181 6.7e-07 57.8 114 31.6
Cfa010681 Carpinus fangiana HOM05D000275 ORTHO05D000181 6.7e-07 57.8 109 27.5
Lalb_Chr07g0190741 Lupinus albus HOM05D000275 ORTHO05D000181 6.7e-07 57.8 116 31.9
Hund19777 Selenicereus undatus HOM05D000275 ORTHO05D000181 6.7e-07 57.8 110 30.0
Zm00001eb163880 Zea mays HOM05D000275 ORTHO05D000181 6.7e-07 57.8 109 33.9
Migut.H00916 Erythranthe guttata HOM05D000275 ORTHO05D000181 8.8e-07 57.4 111 26.1
Hma1.2p1_0128F.1_g059960 Hydrangea macrophylla HOM05D000275 ORTHO05D000181 8.8e-07 57.4 104 32.7
Actinidia29036 Actinidia chinensis HOM05D000275 ORTHO05D000181 1.1e-06 57.0 117 35.0
Aqoxy4G02396 Aquilegia oxysepala HOM05D000275 ORTHO05D000181 1.1e-06 57.0 114 32.5
Gohir.D12G213500 Gossypium hirsutum HOM05D000275 ORTHO05D000181 1.1e-06 57.0 106 31.1
Sabra04G0057500 Salix brachista HOM05D000275 ORTHO05D000181 1.1e-06 57.0 119 32.8
BcaC04g19794 Brassica carinata HOM05D000275 ORTHO05D000181 1.5e-06 56.6 104 31.7
Migut.M01357 Erythranthe guttata HOM05D010533 ORTHO05D003378 1.5e-06 56.6 113 30.1
Medtr7g072930 Medicago truncatula HOM05D000275 ORTHO05D000181 1.5e-06 56.6 108 32.4
Atru.chr8.2392 Acer truncatum HOM05D000275 ORTHO05D000181 2.0e-06 56.2 117 32.5
Eucgr.A00724 Eucalyptus grandis HOM05D000275 ORTHO05D000181 2.0e-06 56.2 117 30.8
Peaxi162Scf00775g00611 Petunia axillaris HOM05D000275 ORTHO05D000181 2.0e-06 56.2 112 33.9
PGSC0003DMG400044985 Solanum tuberosum HOM05D000275 ORTHO05D000181 2.0e-06 56.2 98 32.7
CiPaw.13G063900 Carya illinoinensis HOM05D000275 ORTHO05D000181 2.6e-06 55.8 112 30.4
CiPaw.13G064000 Carya illinoinensis HOM05D000275 ORTHO05D000181 2.6e-06 55.8 112 30.4
ECA248G0963 Erigeron canadensis HOM05D000275 ORTHO05D000181 2.6e-06 55.8 110 29.1
Migut.J00046 Erythranthe guttata HOM05D000275 ORTHO05D000181 2.6e-06 55.8 110 31.8
Gorai.008G229100 Gossypium raimondii HOM05D000275 ORTHO05D000181 2.6e-06 55.8 107 29.0
Medtr7g072980 Medicago truncatula HOM05D000275 ORTHO05D000181 2.6e-06 55.8 108 26.9
RcHm_v2.0_Chr3g0460581 Rosa chinensis HOM05D000275 ORTHO05D000181 2.6e-06 55.8 112 32.1
C03p13820 Brassica napus HOM05D000275 ORTHO05D000181 3.3e-06 55.5 105 29.5
Migut.L00639 Erythranthe guttata HOM05D000275 ORTHO05D000181 3.3e-06 55.5 112 27.7
HanXRQChr13g0419711 Helianthus annuus HOM05D000275 ORTHO05D000181 3.3e-06 55.5 114 34.2
GSVIVG01024563001 Vitis vinifera HOM05D000275 ORTHO05D000181 3.3e-06 55.5 113 29.2
AL6G10160 Arabidopsis lyrata HOM05D000275 ORTHO05D000181 4.4e-06 55.1 117 33.3
BcaC01g04195 Brassica carinata HOM05D000275 ORTHO05D000181 4.4e-06 55.1 113 33.6
C03p43980 Brassica napus HOM05D000275 ORTHO05D000181 4.4e-06 55.1 113 33.6
BolC3t16669H Brassica oleracea HOM05D000275 ORTHO05D000181 4.4e-06 55.1 113 33.6
CsaV3_4G027160 Cucumis sativus L. HOM05D000275 ORTHO05D000181 4.4e-06 55.1 96 35.4
Lj1g0019838 Lotus japonicus HOM05D000275 ORTHO05D000181 4.4e-06 55.1 113 32.7
Potri.001G232700 Populus trichocarpa HOM05D000275 ORTHO05D000181 4.4e-06 55.1 97 28.9
SEGI_29008 Sequoiadendron giganteum HOM05D000275 ORTHO05D000181 4.4e-06 55.1 109 26.6
Eucgr.A00746 Eucalyptus grandis HOM05D000275 ORTHO05D000181 5.7e-06 54.7 113 32.7
HanXRQChr13g0419731 Helianthus annuus HOM05D000275 ORTHO05D000181 5.7e-06 54.7 98 33.7
HanXRQChr13g0419741 Helianthus annuus HOM05D000275 ORTHO05D000181 5.7e-06 54.7 114 33.3
Peaxi162Scf00075g01919 Petunia axillaris HOM05D000275 ORTHO05D000181 5.7e-06 54.7 117 31.6
Atru.chr8.2397 Acer truncatum HOM05D000275 ORTHO05D000181 7.4e-06 54.3 121 32.2
arahy.Tifrunner.gnm1.ann1.JFR3PY Arachis hypogaea HOM05D000275 ORTHO05D000181 7.4e-06 54.3 79 35.4
A03p36370 Brassica napus HOM05D000275 ORTHO05D000181 7.4e-06 54.3 113 33.6
A03p36390 Brassica napus HOM05D000275 ORTHO05D000181 7.4e-06 54.3 113 33.6
BraA03t12807Z Brassica rapa HOM05D000275 ORTHO05D000181 7.4e-06 54.3 113 33.6
Lsat_1_v5_gn_5_152441 Lactuca sativa HOM05D000275 ORTHO05D000181 7.4e-06 54.3 114 32.5
Lj1g0027523 Lotus japonicus HOM05D000275 ORTHO05D000181 7.4e-06 54.3 110 33.6
Os01g0219500 Oryza sativa ssp. japonica HOM05D000275 ORTHO05D049927 7.4e-06 54.3 94 33.0
Psat7g233960 Pisum sativum HOM05D000275 ORTHO05D000181 7.4e-06 54.3 115 30.4
Potri.001G232900 Populus trichocarpa HOM05D000275 ORTHO05D000181 7.4e-06 54.3 97 28.9
Sc18g0006480 Simmondsia chinensis HOM05D006508 ORTHO05D003378 7.4e-06 54.3 115 32.2
ATR1127G122 Amborella trichopoda HOM05D000275 ORTHO05D000181 9.7e-06 53.9 117 29.9
CARHR083070 Cardamine hirsuta HOM05D000275 ORTHO05D000181 9.7e-06 53.9 109 34.9
SGA_v2.0_scaffold95G28758 Striga asiatica HOM05D000275 ORTHO05D000181 9.7e-06 53.9 113 31.9


User provided reference genes

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