Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.G5444S Arachis hypogaea HOM05D003956 ORTHO05D004850 2.2e-42 175.3 91 100.0
arahy.Tifrunner.gnm1.ann1.989M5Y Arachis hypogaea HOM05D003956 ORTHO05D004850 3.0e-31 138.3 96 80.2
arahy.Tifrunner.gnm1.ann1.9WT78J Arachis hypogaea HOM05D003956 ORTHO05D004850 1.1e-30 136.3 91 80.2
arahy.Tifrunner.gnm1.ann1.I3NY02 Arachis hypogaea HOM05D003956 ORTHO05D004850 2.5e-30 135.2 90 82.2
arahy.Tifrunner.gnm1.ann1.HZTZ4X Arachis hypogaea HOM05D003956 ORTHO05D004850 1.8e-28 129.0 82 80.5
Lalb_Chr13g0303991 Lupinus albus HOM05D003956 ORTHO05D004850 1.5e-27 125.9 95 70.5
Actinidia32373 Actinidia chinensis HOM05D003956 ORTHO05D004850 3.4e-27 124.8 90 72.2
Lj4g0014830 Lotus japonicus HOM05D003956 ORTHO05D004850 3.4e-27 124.8 95 70.5
Haze_01011 Corylus avellana HOM05D003956 ORTHO05D004850 5.8e-27 124.0 90 71.1
arahy.Tifrunner.gnm1.ann1.EQKV61 Arachis hypogaea HOM05D003956 ORTHO05D004850 7.6e-27 123.6 90 73.3
arahy.Tifrunner.gnm1.ann1.YQ8C5N Arachis hypogaea HOM05D003956 ORTHO05D004850 7.6e-27 123.6 90 73.3
Glyma.17G020600 Glycine max HOM05D003956 ORTHO05D004850 1.0e-26 123.2 95 70.5
Psat0ss7919g0200 Pisum sativum HOM05D003956 ORTHO05D004850 1.0e-26 123.2 95 69.5
TPR.G28132 Trifolium pratense HOM05D003956 ORTHO05D004850 1.0e-26 123.2 95 70.5
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 1.3e-26 122.9 95 69.5
Glyma.07G253700 Glycine max HOM05D003956 ORTHO05D004850 1.7e-26 122.5 95 70.5
MD13G1177400 Malus domestica HOM05D003956 ORTHO05D004850 1.7e-26 122.5 90 67.8
MD16G1179500 Malus domestica HOM05D003956 ORTHO05D004850 2.2e-26 122.1 90 68.9
Actinidia23451 Actinidia chinensis HOM05D003956 ORTHO05D004850 2.9e-26 121.7 95 67.4
VMungo1215G0684 Vigna mungo HOM05D003956 ORTHO05D004850 3.8e-26 121.3 95 69.5
Ciclev10006837m.g Citrus clementina HOM05D003956 ORTHO05D004850 4.9e-26 120.9 95 68.4
Duzib212G0153 Durio zibethinus HOM05D003956 ORTHO05D004850 1.1e-25 119.8 95 67.4
Thecc.04G272600 Theobroma cacao HOM05D003956 ORTHO05D004850 1.1e-25 119.8 95 67.4
arahy.Tifrunner.gnm1.ann1.7LSJ4G Arachis hypogaea HOM05D003956 ORTHO05D004850 1.4e-25 119.4 90 73.3
MELO3C006585.2 Cucumis melo HOM05D003956 ORTHO05D004850 1.4e-25 119.4 95 67.4
MD16G1179400 Malus domestica HOM05D003956 ORTHO05D004850 1.4e-25 119.4 90 66.7
Lsat_1_v5_gn_5_51481 Lactuca sativa HOM05D003956 ORTHO05D004850 1.9e-25 119.0 90 66.7
PGR004G0287 Punica granatum HOM05D003956 ORTHO05D004850 1.9e-25 119.0 95 67.4
Gohir.D10G162900 Gossypium hirsutum HOM05D003956 ORTHO05D004850 2.5e-25 118.6 95 67.4
Gorai.011G181800 Gossypium raimondii HOM05D003956 ORTHO05D004850 2.5e-25 118.6 95 67.4
MD16G1179300 Malus domestica HOM05D003956 ORTHO05D004850 3.2e-25 118.2 90 66.7
Prupe.1G146600 Prunus persica HOM05D003956 ORTHO05D004850 3.2e-25 118.2 95 66.3
CsaV3_3G013930 Cucumis sativus L. HOM05D003956 ORTHO05D004850 5.5e-25 117.5 95 66.3
Actinidia40209 Actinidia chinensis HOM05D003956 ORTHO05D004850 7.1e-25 117.1 95 65.3
CiPaw.01G156600 Carya illinoinensis HOM05D003956 ORTHO05D004850 7.1e-25 117.1 95 67.4
Sc25g0004550 Simmondsia chinensis HOM05D003956 ORTHO05D004850 7.1e-25 117.1 95 64.2
Cpa.g.sc16.74 Carica papaya HOM05D003956 ORTHO05D004850 9.3e-25 116.7 95 66.3
Potri.010G027800 Populus trichocarpa HOM05D003956 ORTHO05D004850 9.3e-25 116.7 95 65.3
ECA240G3955 Erigeron canadensis HOM05D003956 ORTHO05D004850 1.2e-24 116.3 95 66.3
Medtr4g118355 Medicago truncatula HOM05D003956 ORTHO05D004850 1.2e-24 116.3 95 68.4
Oeu032695.1 Olea europaea HOM05D003956 ORTHO05D004850 1.2e-24 116.3 95 65.3
Atru.chr4.2704 Acer truncatum HOM05D003956 ORTHO05D004850 1.6e-24 115.9 95 65.3
ClCG05G005590 Citrullus lanatus HOM05D003956 ORTHO05D004850 1.6e-24 115.9 95 65.3
Dinv44455 Davidia involucrata HOM05D003956 ORTHO05D004850 1.6e-24 115.9 95 66.3
CANSAT78G1736 Cannabis sativa HOM05D003956 ORTHO05D004850 2.1e-24 115.5 95 65.3
Nn3g21184 Nelumbo nucifera HOM05D003956 ORTHO05D004850 2.1e-24 115.5 95 64.2
Phvul.003G098200 Phaseolus vulgaris HOM05D003956 ORTHO05D004850 2.1e-24 115.5 95 67.4
QL06p005921 Quercus lobata HOM05D003956 ORTHO05D004850 2.1e-24 115.5 95 65.3
SGA_v2.0_scaffold142G35643 Striga asiatica HOM05D003956 ORTHO05D004850 2.1e-24 115.5 90 67.8
Duzib151G0209 Durio zibethinus HOM05D003956 ORTHO05D004850 2.7e-24 115.2 95 66.3
Sed0002405 Sechium edule HOM05D003956 ORTHO05D004850 3.5e-24 114.8 95 64.2
Hund20662 Selenicereus undatus HOM05D003956 ORTHO05D004850 3.5e-24 114.8 90 66.7
Rhsim04G0213100 Rhododendron simsii HOM05D003956 ORTHO05D004850 4.6e-24 114.4 95 65.3
TAR365G1004 Trochodendron aralioides HOM05D003956 ORTHO05D004850 4.6e-24 114.4 95 63.2
EL10Ac1g01820 Beta vulgaris HOM05D003956 ORTHO05D004850 6.0e-24 114.0 90 67.8
Nitab4.5_0000059g0230 Nicotiana tabacum HOM05D003956 ORTHO05D004850 6.0e-24 114.0 95 64.2
Psat4g028880 Pisum sativum HOM05D003956 ORTHO05D004850 6.0e-24 114.0 95 65.3
Peaxi162Scf00095g00414 Petunia axillaris HOM05D003956 ORTHO05D004850 7.9e-24 113.6 95 64.2
QL06p006231 Quercus lobata HOM05D003956 ORTHO05D004850 7.9e-24 113.6 107 58.9
Migut.G00280 Erythranthe guttata HOM05D003956 ORTHO05D004850 1.0e-23 113.2 95 64.2
Migut.G00282 Erythranthe guttata HOM05D003956 ORTHO05D004850 1.0e-23 113.2 95 64.2
Nitab4.5_0010477g0010 Nicotiana tabacum HOM05D003956 ORTHO05D004850 1.0e-23 113.2 95 64.2
Cfa015539 Carpinus fangiana HOM05D003956 ORTHO05D004850 1.3e-23 112.8 95 65.3
AUR62034949 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.3e-23 112.8 90 68.9
Duzib151G0049 Durio zibethinus HOM05D003956 ORTHO05D004850 1.3e-23 112.8 95 63.2
CAN.G889.10 Capsicum annuum HOM05D003956 ORTHO05D004850 1.8e-23 112.5 95 63.2
AUR62035456 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.8e-23 112.5 90 68.9
Manes.03G188300 Manihot esculenta HOM05D003956 ORTHO05D004850 1.8e-23 112.5 95 63.2
RcHm_v2.0_Chr4g0420131 Rosa chinensis HOM05D003956 ORTHO05D004850 1.8e-23 112.5 95 63.2
CSS0018237 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 2.3e-23 112.1 94 66.0
Cc03_g02730 Coffea canephora HOM05D003956 ORTHO05D004850 2.3e-23 112.1 99 62.6
FvH4_4g16670 Fragaria vesca HOM05D003956 ORTHO05D004850 2.3e-23 112.1 95 62.1
FAN07G1911 Fragaria x ananassa HOM05D003956 ORTHO05D004850 2.3e-23 112.1 95 62.1
FAN12G0499 Fragaria x ananassa HOM05D003956 ORTHO05D004850 2.3e-23 112.1 95 62.1
FAN12G2270 Fragaria x ananassa HOM05D003956 ORTHO05D004850 2.3e-23 112.1 95 62.1
FAN17G1489 Fragaria x ananassa HOM05D003956 ORTHO05D004850 2.3e-23 112.1 95 62.1
FAN22G1243 Fragaria x ananassa HOM05D003956 ORTHO05D004850 2.3e-23 112.1 95 62.1
Solyc01g080460.3 Solanum lycopersicum HOM05D003956 ORTHO05D004850 2.3e-23 112.1 95 63.2
Sopen01g032260 Solanum pennellii HOM05D003956 ORTHO05D004850 2.3e-23 112.1 95 63.2
PGSC0003DMG400032107 Solanum tuberosum HOM05D003956 ORTHO05D004850 2.3e-23 112.1 95 63.2
vmacro08238 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 2.3e-23 112.1 113 55.8
CSS0013368 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 3.9e-23 111.3 95 65.3
GSVIVG01017850001 Vitis vinifera HOM05D003956 ORTHO05D004850 3.9e-23 111.3 95 62.1
Aqoxy2G03183 Aquilegia oxysepala HOM05D003956 ORTHO05D004850 5.1e-23 110.9 95 61.1
TWI09G0935 Tripterygium wilfordii HOM05D003956 ORTHO05D004850 5.1e-23 110.9 95 63.2
MSTRG.10031 Avicennia marina HOM05D003956 ORTHO05D004850 6.7e-23 110.5 95 62.1
CSS0033563 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 6.7e-23 110.5 95 63.2
SGA_v2.0_scaffold86G26865 Striga asiatica HOM05D003956 ORTHO05D004850 6.7e-23 110.5 90 65.6
Nn4g26122 Nelumbo nucifera HOM05D003956 ORTHO05D004850 8.7e-23 110.2 95 62.1
ATR0626G228 Amborella trichopoda HOM05D003956 ORTHO05D004850 1.1e-22 109.8 95 60.0
Eucgr.H03642 Eucalyptus grandis HOM05D003956 ORTHO05D004850 1.1e-22 109.8 95 60.0
Lj3C806G12 Lonicera japonica HOM05D003956 ORTHO05D004850 1.1e-22 109.8 97 61.9
Sabra10G0012900 Salix brachista HOM05D003956 ORTHO05D004850 1.1e-22 109.8 90 65.6
SGA_v2.0_scaffold86G26866 Striga asiatica HOM05D003956 ORTHO05D004850 1.1e-22 109.8 90 65.6
Thecc.04G272800 Theobroma cacao HOM05D003956 ORTHO05D004850 1.1e-22 109.8 95 63.2
MSTRG.10030 Avicennia marina HOM05D003956 ORTHO05D004850 1.9e-22 109.0 95 63.2
Hma1.2p1_0511F.1_g169230 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 1.9e-22 109.0 90 66.7
Sp7g13780 Schrenkiella parvula HOM05D003956 ORTHO05D004850 1.9e-22 109.0 95 63.2
Zm00001eb287770 Zea mays HOM05D003956 ORTHO05D004850 1.9e-22 109.0 95 58.9
Aa31LG9G1910 Aethionema arabicum HOM05D003956 ORTHO05D004850 2.5e-22 108.6 95 64.2
SMO351G0542 Selaginella moellendorffii HOM05D003956 ORTHO05D004850 2.5e-22 108.6 95 58.9
Zm00001eb349810 Zea mays HOM05D003956 ORTHO05D004850 5.7e-22 107.5 95 57.9
Eucgr.B01186 Eucalyptus grandis HOM05D003956 ORTHO05D004850 7.4e-22 107.1 95 62.1
MD13G1177500 Malus domestica HOM05D003956 ORTHO05D004850 7.4e-22 107.1 124 50.0
Os05g0405000 Oryza sativa ssp. japonica HOM05D003956 ORTHO05D004850 7.4e-22 107.1 95 57.9
PSO170G3340 Papaver somniferum HOM05D003956 ORTHO05D004850 7.4e-22 107.1 95 56.8
THA.LOC104820228 Tarenaya hassleriana HOM05D003956 ORTHO05D004850 7.4e-22 107.1 95 62.1
BcaC06g32940 Brassica carinata HOM05D003956 ORTHO05D004850 9.7e-22 106.7 95 60.0
PSO302G0065 Papaver somniferum HOM05D003956 ORTHO05D004850 9.7e-22 106.7 95 56.8
PGR031G3666 Punica granatum HOM05D003956 ORTHO05D004850 1.3e-21 106.3 95 63.2
AL7G39990 Arabidopsis lyrata HOM05D003956 ORTHO05D004850 1.6e-21 105.9 95 61.1
Thhalv10024330m.g Eutrema salsugineum HOM05D003956 ORTHO05D004850 1.6e-21 105.9 95 61.1
Pp3c5_22540 Physcomitrium patens HOM05D003956 ORTHO05D004850 1.6e-21 105.9 95 57.9
unitig_749.g14056 Utricularia gibba HOM05D003956 ORTHO05D004850 1.6e-21 105.9 95 60.0
BcaC06g33414 Brassica carinata HOM05D003956 ORTHO05D004850 2.2e-21 105.5 95 60.0
A03p49170 Brassica napus HOM05D003956 ORTHO05D004850 2.2e-21 105.5 95 60.0
C07p47210 Brassica napus HOM05D003956 ORTHO05D004850 2.2e-21 105.5 95 60.0
BolC7t45243H Brassica oleracea HOM05D003956 ORTHO05D004850 2.2e-21 105.5 95 60.0
BraA03t14011Z Brassica rapa HOM05D003956 ORTHO05D004850 2.2e-21 105.5 95 60.0
Hund19586 Selenicereus undatus HOM05D003956 ORTHO05D004850 2.2e-21 105.5 95 60.0
AT4G15530 Arabidopsis thaliana HOM05D003956 ORTHO05D004850 2.8e-21 105.1 95 61.1
A01p22040 Brassica napus HOM05D003956 ORTHO05D004850 2.8e-21 105.1 95 60.0
BraA01t02110Z Brassica rapa HOM05D003956 ORTHO05D004850 2.8e-21 105.1 95 60.0
CARHR222330 Cardamine hirsuta HOM05D003956 ORTHO05D004850 2.8e-21 105.1 95 60.0
BcaC09g50248 Brassica carinata HOM05D003956 ORTHO05D004850 3.7e-21 104.8 95 60.0
BcaNung00266 Brassica carinata HOM05D003956 ORTHO05D004850 3.7e-21 104.8 95 60.0
C01p27430 Brassica napus HOM05D003956 ORTHO05D004850 3.7e-21 104.8 95 60.0
BolC1t02682H Brassica oleracea HOM05D003956 ORTHO05D004850 3.7e-21 104.8 95 60.0
CDE08G0632 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 3.7e-21 104.8 95 57.9
unitig_26.g8936 Utricularia gibba HOM05D003956 ORTHO05D004850 4.8e-21 104.4 95 58.9
vmacro15287 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 4.8e-21 104.4 90 63.3
BcaC09g50243 Brassica carinata HOM05D003956 ORTHO05D004850 6.3e-21 104.0 94 60.6
Carub.0007s2635 Capsella rubella HOM05D003956 ORTHO05D004850 8.2e-21 103.6 95 61.1
AagrBONN_evm.TU.Sc2ySwM_228.3276 Anthoceros agrestis HOM05D003956 ORTHO05D004850 2.4e-20 102.1 95 56.8
Rhsim02G0016700 Rhododendron simsii HOM05D003956 ORTHO05D004850 2.4e-20 102.1 90 61.1
Mapoly0009s0124 Marchantia polymorpha HOM05D003956 ORTHO05D004850 3.1e-20 101.7 95 57.9
SalBow2G1708 Salvia bowleyana HOM05D003956 ORTHO05D004850 6.9e-20 100.5 90 60.0
Ah.11g043140 Amaranthus hybridus HOM05D003956 ORTHO05D004850 1.7e-18 95.9 86 60.5
CDE02G0811 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 1.7e-18 95.9 112 48.2
Hma1.2p1_2025F.1_g311530 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 6.5e-18 94.0 82 64.6
CBR_g50184 Chara braunii HOM05D003956 ORTHO05D004850 1.1e-17 93.2 95 52.6
MCO01G687 Micromonas commoda HOM05D003956 ORTHO05D004850 2.5e-14 82.0 95 47.4
TPR.G28133 Trifolium pratense HOM05D003956 ORTHO05D004850 2.5e-14 82.0 74 62.2
MCO12G211 Micromonas commoda HOM05D003956 ORTHO05D004850 4.3e-14 81.3 95 47.4
Cre17.g734548 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 1.8e-12 75.9 93 52.7
Gohir.A10G105700 Gossypium hirsutum HOM05D003956 ORTHO05D004850 6.9e-12 73.9 61 65.6
Cre10.g424750 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 2.2e-10 68.9 95 44.2
arahy.Tifrunner.gnm1.ann1.DC6B04 Arachis hypogaea HOM05D003956 ORTHO05D004850 3.8e-10 68.2 44 81.8
arahy.Tifrunner.gnm1.ann1.GGZS5I Arachis hypogaea HOM05D003956 ORTHO05D004850 8.5e-10 67.0 71 60.6
AUR62034328 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.6e-08 62.8 66 54.5
DCAR_023283 Daucus carota HOM05D003956 ORTHO05D004850 4.7e-08 61.2 90 43.3
MBI15_g32557_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 4.4e-06 54.7 39 64.1


User provided reference genes

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