Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.G4DYTJ Arachis hypogaea HOM05D008978 ORTHO05D010988 2.1e-143 512.3 247 100.0
arahy.Tifrunner.gnm1.ann1.7K017H Arachis hypogaea HOM05D008978 ORTHO05D010988 7.4e-133 477.2 247 93.1
arahy.Tifrunner.gnm1.ann1.8W42RH Arachis hypogaea HOM05D008978 ORTHO05D010988 7.6e-130 467.2 247 91.9
arahy.Tifrunner.gnm1.ann1.Q8QCE9 Arachis hypogaea HOM05D008978 ORTHO05D010988 1.2e-50 204.1 148 68.2
Medtr5g094680 Medicago truncatula HOM05D008978 ORTHO05D010988 1.9e-35 153.7 231 42.9
TPR.G15453 Trifolium pratense HOM05D008978 ORTHO05D010988 9.3e-27 124.8 180 40.0
TPR.G40035 Trifolium pratense HOM05D008978 ORTHO05D010988 3.9e-25 119.4 179 39.1
TPR.G25767 Trifolium pratense HOM05D008978 ORTHO05D010988 5.1e-25 119.0 231 31.6
TPR.G26731 Trifolium pratense HOM05D008978 ORTHO05D010988 1.3e-23 114.4 231 32.5
TPR.G575 Trifolium pratense HOM05D008978 ORTHO05D010988 1.3e-23 114.4 228 36.0
TPR.G17946 Trifolium pratense HOM05D008978 ORTHO05D010988 2.8e-23 113.2 211 35.5
TPR.G24474 Trifolium pratense HOM05D008978 ORTHO05D010988 4.0e-22 109.4 243 35.0
TPR.G25779 Trifolium pratense HOM05D008978 ORTHO05D010988 6.9e-22 108.6 209 34.4
Medtr5g006240 Medicago truncatula HOM05D008978 ORTHO05D010988 3.4e-21 106.3 211 34.6
TPR.G11843 Trifolium pratense HOM05D008978 ORTHO05D010988 1.3e-20 104.4 222 31.1
TPR.G36616 Trifolium pratense HOM05D008978 ORTHO05D010988 2.5e-19 100.1 173 37.6
TPR.G34387 Trifolium pratense HOM05D008978 ORTHO05D010988 9.3e-19 98.2 170 36.5
TPR.G25798 Trifolium pratense HOM05D008978 ORTHO05D010988 2.1e-18 97.1 170 35.9
TPR.G11563 Trifolium pratense HOM05D008978 ORTHO05D010988 6.0e-18 95.5 151 37.1
TPR.G11917 Trifolium pratense HOM05D008978 ORTHO05D010988 7.9e-18 95.1 240 30.4
Medtr1g029860 Medicago truncatula HOM05D008978 ORTHO05D010988 2.5e-16 90.1 177 32.8
Medtr7g093310 Medicago truncatula HOM05D008978 ORTHO05D010988 1.5e-13 80.9 172 31.4
Medtr8g085520 Medicago truncatula HOM05D008978 ORTHO05D010988 1.5e-13 80.9 156 33.3
Medtr5g037840 Medicago truncatula HOM05D008978 ORTHO05D010988 3.4e-13 79.7 140 36.4
Medtr5g037810 Medicago truncatula HOM05D008978 ORTHO05D010988 5.9e-13 79.0 140 36.4
Lalb_Chr04g0253451 Lupinus albus HOM05D008978 ORTHO05D010988 7.6e-13 78.6 101 38.6
Lj1g0026275 Lotus japonicus HOM05D008978 ORTHO05D010988 1.3e-12 77.8 175 29.7
Medtr8g085550 Medicago truncatula HOM05D008978 ORTHO05D010988 1.9e-11 73.9 158 33.5
Medtr8g085530 Medicago truncatula HOM05D008978 ORTHO05D010988 4.2e-11 72.8 58 53.4
Haze_00433 Corylus avellana HOM05D000082 ORTHO05D000038 1.3e-09 67.8 228 28.1
QL10p017068 Quercus lobata HOM05D000082 ORTHO05D000038 3.0e-09 66.6 177 29.4
RcHm_v2.0_Chr6g0295911 Rosa chinensis HOM05D000082 ORTHO05D000038 3.9e-09 66.2 220 26.8
AL4G17000 Arabidopsis lyrata HOM05D008317 ORTHO05D012776 5.1e-09 65.9 75 44.0
arahy.Tifrunner.gnm1.ann1.C66TNP Arachis hypogaea HOM05D000082 ORTHO05D000038 6.7e-09 65.5 259 26.6
QL10p017308 Quercus lobata HOM05D000082 ORTHO05D000038 1.9e-08 63.9 224 27.7
QL11p045313 Quercus lobata HOM05D010992 ORTHO05D000038 4.3e-08 62.8 154 29.9
Peaxi162Scf00431g00512 Petunia axillaris HOM05D000082 ORTHO05D000038 5.7e-08 62.4 79 32.9
TPR.G11846 Trifolium pratense HOM05D008978 ORTHO05D010988 5.7e-08 62.4 196 29.6
Medtr1g029910 Medicago truncatula HOM05D008978 ORTHO05D010988 7.4e-08 62.0 74 39.2
Peaxi162Scf00013g01223 Petunia axillaris HOM05D000082 ORTHO05D000038 7.4e-08 62.0 79 32.9
RcHm_v2.0_Chr4g0388871 Rosa chinensis HOM05D016268 ORTHO05D019548 1.3e-07 61.2 147 28.6
COL.COLO4_23206 Corchorus olitorius HOM05D000082 ORTHO05D000038 1.6e-07 60.8 117 32.5
PSO782G2355 Papaver somniferum HOM05D000341 ORTHO05D000557 1.6e-07 60.8 92 34.8
FvH4_4g00060 Fragaria vesca HOM05D000082 ORTHO05D019548 2.2e-07 60.5 135 29.6
FAN12G0522 Fragaria x ananassa HOM05D000082 ORTHO05D019548 2.2e-07 60.5 135 29.6
AL2G30430 Arabidopsis lyrata HOM05D009340 ORTHO05D011957 2.8e-07 60.1 72 43.1
EL10Ac9g21562 Beta vulgaris HOM05D010671 ORTHO05D013417 2.8e-07 60.1 58 46.6
Ca_27540_v3 Cicer arietinum L. HOM05D000082 ORTHO05D000038 2.8e-07 60.1 96 36.5
Lalb_Chr11g0067361 Lupinus albus HOM05D000082 ORTHO05D000038 2.8e-07 60.1 142 27.5
Aqoxy4G02838 Aquilegia oxysepala HOM05D000082 ORTHO05D000038 4.8e-07 59.3 130 33.8
AT5G37230 Arabidopsis thaliana HOM05D008374 ORTHO05D010264 4.8e-07 59.3 95 35.8
Gorai.005G067200 Gossypium raimondii HOM05D000082 ORTHO05D000038 4.8e-07 59.3 161 28.0
PSO478G0402 Papaver somniferum HOM05D000341 ORTHO05D000557 4.8e-07 59.3 92 34.8
AT5G37270 Arabidopsis thaliana HOM05D008374 ORTHO05D010264 6.3e-07 58.9 81 39.5
MELO3C017919.2 Cucumis melo HOM05D000082 ORTHO05D000038 6.3e-07 58.9 205 27.3
CsaV3_2G036020 Cucumis sativus L. HOM05D000082 ORTHO05D014613 6.3e-07 58.9 197 28.9
HanXRQChr08g0224131 Helianthus annuus HOM05D000187 ORTHO05D000230 6.3e-07 58.9 128 28.9
MD09G1234400 Malus domestica HOM05D000082 ORTHO05D008126 6.3e-07 58.9 83 39.8
MD14G1132500 Malus domestica HOM05D000086 ORTHO05D002912 6.3e-07 58.9 85 35.3
Nn1g00576 Nelumbo nucifera HOM05D000082 ORTHO05D000038 6.3e-07 58.9 92 35.9
Thecc.05G308200 Theobroma cacao HOM05D014838 ORTHO05D014197 6.3e-07 58.9 171 29.8
Gohir.A02G054700 Gossypium hirsutum HOM05D000082 ORTHO05D000038 8.2e-07 58.5 211 26.5
Sed0002646 Sechium edule HOM05D000082 ORTHO05D000038 8.2e-07 58.5 121 32.2
PGSC0003DMG400014839 Solanum tuberosum HOM05D000082 ORTHO05D000038 8.2e-07 58.5 139 28.1
VMungo0720G2812 Vigna mungo HOM05D000086 ORTHO05D003081 8.2e-07 58.5 86 40.7
Ah.16g102310 Amaranthus hybridus HOM05D003103 ORTHO05D019548 1.1e-06 58.2 117 29.1
FvH4_4g02720 Fragaria vesca HOM05D016268 ORTHO05D000038 1.1e-06 58.2 139 28.8
Prupe.1G495200 Prunus persica HOM05D000082 ORTHO05D000038 1.1e-06 58.2 219 25.1
GSVIVG01019592001 Vitis vinifera HOM05D000086 ORTHO05D002912 1.1e-06 58.2 71 39.4
Aqoxy1G01989 Aquilegia oxysepala HOM05D000082 ORTHO05D008126 1.4e-06 57.8 65 41.5
FvH4_3g06320 Fragaria vesca HOM05D013845 ORTHO05D020717 1.4e-06 57.8 72 38.9
HanXRQChr08g0224571 Helianthus annuus HOM05D000187 ORTHO05D000230 1.4e-06 57.8 128 28.1
Hma1.2p1_1754F.1_g300910 Hydrangea macrophylla HOM05D000082 ORTHO05D000038 1.4e-06 57.8 121 33.1
Lsat_1_v5_gn_1_26880 Lactuca sativa HOM05D004077 ORTHO05D004872 1.4e-06 57.8 98 36.7
MD14G1196800 Malus domestica HOM05D000082 ORTHO05D000038 1.4e-06 57.8 158 27.8
Nn6g34483 Nelumbo nucifera HOM05D000082 ORTHO05D008126 1.4e-06 57.8 82 37.8
RcHm_v2.0_Chr7g0190371 Rosa chinensis HOM05D006854 ORTHO05D011215 1.4e-06 57.8 86 38.4
RcHm_v2.0_Chr7g0205181 Rosa chinensis HOM05D001778 ORTHO05D000038 1.4e-06 57.8 72 38.9
TWI14G0182 Tripterygium wilfordii HOM05D000082 ORTHO05D000038 1.4e-06 57.8 79 40.5
GSVIVG01020765001 Vitis vinifera HOM05D000082 ORTHO05D008126 1.4e-06 57.8 164 30.5
Phvul.007G128200 Phaseolus vulgaris HOM05D000086 ORTHO05D003081 1.8e-06 57.4 85 38.8
QL07p023563 Quercus lobata HOM05D000082 ORTHO05D000038 1.8e-06 57.4 98 33.7
SGA_v2.0_scaffold181G39701 Striga asiatica HOM05D000341 ORTHO05D001197 1.8e-06 57.4 60 48.3
Ah.14g084520 Amaranthus hybridus HOM05D000082 ORTHO05D000038 2.4e-06 57.0 87 33.3
AT5G37250 Arabidopsis thaliana HOM05D008374 ORTHO05D010264 2.4e-06 57.0 110 33.6
FAN11G3254 Fragaria x ananassa HOM05D013845 ORTHO05D020717 2.4e-06 57.0 66 37.9
FAN21G2330 Fragaria x ananassa HOM05D013845 ORTHO05D020717 2.4e-06 57.0 73 38.4
Gohir.D02G059600 Gossypium hirsutum HOM05D000082 ORTHO05D014197 2.4e-06 57.0 183 27.3
MD06G1190000 Malus domestica HOM05D000082 ORTHO05D000038 2.4e-06 57.0 147 30.6
Prupe.6G084800 Prunus persica HOM05D000082 ORTHO05D000038 2.4e-06 57.0 85 34.1
QL10p015716 Quercus lobata HOM05D000082 ORTHO05D000038 2.4e-06 57.0 95 34.7
Sabra13G0098200 Salix brachista HOM05D000082 ORTHO05D014613 2.4e-06 57.0 65 41.5
Hund07765 Selenicereus undatus HOM05D000082 ORTHO05D008126 2.4e-06 57.0 164 28.0
AL4G35430 Arabidopsis lyrata HOM05D031911 ORTHO05D031281 3.1e-06 56.6 105 32.4
AL4G35460 Arabidopsis lyrata HOM05D031911 ORTHO05D031281 3.1e-06 56.6 105 32.4
Haze_22908 Corylus avellana HOM05D000341 ORTHO05D008453 3.1e-06 56.6 61 42.6
Duzib177G0790 Durio zibethinus HOM05D014838 ORTHO05D014197 3.1e-06 56.6 146 30.1
FvH4_5g04821 Fragaria vesca HOM05D006854 ORTHO05D022664 3.1e-06 56.6 84 35.7
FAN04G2532 Fragaria x ananassa HOM05D006854 ORTHO05D022664 3.1e-06 56.6 87 35.6
FAN08G3474 Fragaria x ananassa HOM05D006854 ORTHO05D022664 3.1e-06 56.6 87 35.6
MBI18_g46620_MAGBIO Magnolia biondii HOM05D002070 ORTHO05D000038 3.1e-06 56.6 65 44.6
MD12G1121000 Malus domestica HOM05D000082 ORTHO05D020668 3.1e-06 56.6 65 43.1
Sed0025763 Sechium edule HOM05D000082 ORTHO05D000038 3.1e-06 56.6 107 37.4
Solyc04g005740.1 Solanum lycopersicum HOM05D000082 ORTHO05D000038 3.1e-06 56.6 236 23.7
Aa31LG1G20500 Aethionema arabicum HOM05D000086 ORTHO05D003081 4.1e-06 56.2 101 32.7
A04p10810 Brassica napus HOM05D008374 ORTHO05D010264 4.1e-06 56.2 89 34.8
BraA04t16748Z Brassica rapa HOM05D008374 ORTHO05D010264 4.1e-06 56.2 89 34.8
Cpa.g.sc20.15 Carica papaya HOM05D000082 ORTHO05D018908 4.1e-06 56.2 80 43.8
Cpa.g.sc231.4 Carica papaya HOM05D000082 ORTHO05D018908 4.1e-06 56.2 75 41.3
CiPaw.01G186600 Carya illinoinensis HOM05D000086 ORTHO05D003081 4.1e-06 56.2 66 43.9
ECA247G0373 Erigeron canadensis HOM05D004077 ORTHO05D004872 4.1e-06 56.2 99 35.4
FAN04G0586 Fragaria x ananassa HOM05D006854 ORTHO05D011215 4.1e-06 56.2 95 34.7
MBI04_g35053_MAGBIO Magnolia biondii HOM05D000341 ORTHO05D000557 4.1e-06 56.2 104 35.6
Sabra19G0097000 Salix brachista HOM05D000082 ORTHO05D000038 4.1e-06 56.2 66 34.8
Atru.chr9.1938 Acer truncatum HOM05D000086 ORTHO05D002912 5.3e-06 55.8 73 38.4
Aa31LG10G9200 Aethionema arabicum HOM05D012539 ORTHO05D000038 5.3e-06 55.8 199 26.1
AL7G45680 Arabidopsis lyrata HOM05D008374 ORTHO05D010264 5.3e-06 55.8 91 35.2
BcaB01g01505 Brassica carinata HOM05D008302 ORTHO05D000038 5.3e-06 55.8 84 38.1
Cfa011893 Carpinus fangiana HOM05D000341 ORTHO05D000557 5.3e-06 55.8 80 36.2
CiPaw.16G005300 Carya illinoinensis HOM05D010992 ORTHO05D000038 5.3e-06 55.8 108 24.1
FAN13G1691 Fragaria x ananassa HOM05D006854 ORTHO05D022664 5.3e-06 55.8 87 35.6
Glyma.08G024800 Glycine max HOM05D000086 ORTHO05D002912 5.3e-06 55.8 83 38.6
Hma1.2p1_0002F.1_g003140 Hydrangea macrophylla HOM05D000082 ORTHO05D000038 5.3e-06 55.8 121 32.2
Medtr7g092960 Medicago truncatula HOM05D008978 ORTHO05D010988 5.3e-06 55.8 69 40.6
Oeu040450.1 Olea europaea HOM05D000341 ORTHO05D001197 5.3e-06 55.8 71 35.2
Sed0021279 Sechium edule HOM05D000341 ORTHO05D000557 5.3e-06 55.8 66 42.4
unitig_699.g19398 Utricularia gibba HOM05D000341 ORTHO05D008453 5.3e-06 55.8 66 40.9
BcaC02g09597 Brassica carinata HOM05D008374 ORTHO05D010264 6.9e-06 55.5 82 36.6
BcaC02g09599 Brassica carinata HOM05D008374 ORTHO05D010264 6.9e-06 55.5 82 36.6
C04p44530 Brassica napus HOM05D008374 ORTHO05D010264 6.9e-06 55.5 82 36.6
C04p44560 Brassica napus HOM05D008374 ORTHO05D010264 6.9e-06 55.5 82 36.6
BolC4t26025H Brassica oleracea HOM05D008374 ORTHO05D010264 6.9e-06 55.5 82 36.6
BolC4t26028H Brassica oleracea HOM05D008374 ORTHO05D010264 6.9e-06 55.5 82 36.6
Cfa002927 Carpinus fangiana HOM05D000341 ORTHO05D008453 6.9e-06 55.5 61 44.3
FvH4_6g11580 Fragaria vesca HOM05D025326 ORTHO05D000038 6.9e-06 55.5 105 29.5
FAN14G5318 Fragaria x ananassa HOM05D025326 ORTHO05D000038 6.9e-06 55.5 107 30.8
FAN14G5673 Fragaria x ananassa HOM05D025326 ORTHO05D000038 6.9e-06 55.5 105 29.5
Glyma.12G131800 Glycine max HOM05D000082 ORTHO05D008126 6.9e-06 55.5 67 41.8
Glyma.20G066300 Glycine max HOM05D000086 ORTHO05D002912 6.9e-06 55.5 149 28.9
HanXRQChr04g0101541 Helianthus annuus HOM05D004077 ORTHO05D004872 6.9e-06 55.5 99 34.3
Lj1g0026265 Lotus japonicus HOM05D000082 ORTHO05D000038 6.9e-06 55.5 68 41.2
Medtr4g124380 Medicago truncatula HOM05D000341 ORTHO05D008453 6.9e-06 55.5 95 29.5
Medtr8g102170 Medicago truncatula HOM05D008978 ORTHO05D010988 6.9e-06 55.5 123 33.3
Prupe.3G112600 Prunus persica HOM05D000082 ORTHO05D008126 6.9e-06 55.5 83 37.3
Rhsim04G0078600 Rhododendron simsii HOM05D000082 ORTHO05D008126 6.9e-06 55.5 142 30.3
PGSC0003DMG400002830 Solanum tuberosum HOM05D000082 ORTHO05D000038 6.9e-06 55.5 79 36.7
Aa31LG5G16710 Aethionema arabicum HOM05D008374 ORTHO05D010264 9.0e-06 55.1 71 36.6
Aa31LG9G6790 Aethionema arabicum HOM05D008374 ORTHO05D010264 9.0e-06 55.1 129 29.5
EL10Ac9g21564 Beta vulgaris HOM05D010671 ORTHO05D013417 9.0e-06 55.1 63 39.7
EL10Ac9g22837 Beta vulgaris HOM05D010671 ORTHO05D013417 9.0e-06 55.1 63 42.9
EL10Ac9g22838 Beta vulgaris HOM05D010671 ORTHO05D013417 9.0e-06 55.1 63 42.9
CiPaw.04G094800 Carya illinoinensis HOM05D000341 ORTHO05D000557 9.0e-06 55.1 63 36.5
Ca_14328_v3 Cicer arietinum L. HOM05D000082 ORTHO05D000038 9.0e-06 55.1 108 32.4
Dinv05323 Davidia involucrata HOM05D000341 ORTHO05D001197 9.0e-06 55.1 69 36.2
Thhalv10029381m.g Eutrema salsugineum HOM05D008302 ORTHO05D000038 9.0e-06 55.1 84 32.1
FvH4_5g09630 Fragaria vesca HOM05D006854 ORTHO05D011215 9.0e-06 55.1 96 31.2
FAN18G1262 Fragaria x ananassa HOM05D006854 ORTHO05D011215 9.0e-06 55.1 96 31.2
FAN25G3257 Fragaria x ananassa HOM05D013845 ORTHO05D020717 9.0e-06 55.1 62 38.7
Glyma.10G187100 Glycine max HOM05D000086 ORTHO05D003081 9.0e-06 55.1 64 46.9
HanXRQChr08g0224121 Helianthus annuus HOM05D000187 ORTHO05D000230 9.0e-06 55.1 128 27.3
Prupe.6G077200 Prunus persica HOM05D000086 ORTHO05D001065 9.0e-06 55.1 65 40.0
QL08p042523 Quercus lobata HOM05D000082 ORTHO05D008126 9.0e-06 55.1 75 33.3
Rhsim13G0176000 Rhododendron simsii HOM05D000341 ORTHO05D000557 9.0e-06 55.1 147 27.9


User provided reference genes

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