Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 6.7e-142 507.3 248 100.0
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 3.0e-94 349.0 248 75.8
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 1.5e-77 293.5 240 68.3
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 4.4e-77 292.0 240 67.5
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 9.8e-77 290.8 242 66.5
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 1.3e-76 290.4 240 67.1
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 7.3e-72 274.6 251 62.2
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 2.8e-71 272.7 250 61.6
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 2.8e-71 272.7 236 64.0
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 2.2e-68 263.1 244 60.2
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 1.9e-67 260.0 236 61.4
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 2.7e-66 256.1 242 57.9
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 2.3e-65 253.1 239 60.3
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 1.9e-64 250.0 241 57.3
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 1.9e-64 250.0 239 58.6
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 1.9e-64 250.0 239 58.2
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 2.5e-64 249.6 239 59.0
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 2.5e-64 249.6 239 58.2
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 2.5e-64 249.6 235 59.6
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 3.3e-64 249.2 235 59.6
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 1.2e-63 247.3 235 59.6
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 3.1e-62 242.7 223 61.0
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 1.2e-61 240.7 235 57.9
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 2.0e-61 240.0 237 56.1
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 2.6e-61 239.6 235 56.6
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 2.6e-61 239.6 239 55.2
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 3.4e-61 239.2 235 56.6
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 4.4e-61 238.8 242 55.4
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 4.4e-61 238.8 235 57.4
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 5.8e-61 238.4 237 55.7
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 7.6e-61 238.0 239 54.8
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 9.9e-61 237.7 241 54.4
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 2.2e-60 236.5 235 57.0
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 2.9e-60 236.1 232 56.0
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 2.9e-60 236.1 244 54.5
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 1.9e-59 233.4 238 55.9
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 3.2e-59 232.6 248 54.0
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 4.2e-59 232.3 228 57.0
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 7.1e-59 231.5 241 52.7
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 4.6e-58 228.8 234 54.3
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 6.0e-58 228.4 242 53.3
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 1.0e-57 227.6 235 54.9
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 1.3e-57 227.3 234 53.4
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 1.7e-57 226.9 234 56.8
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 2.3e-57 226.5 241 52.7
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 3.0e-57 226.1 250 52.8
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 8.7e-57 224.6 233 53.6
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 1.1e-56 224.2 230 53.5
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 1.1e-56 224.2 233 53.6
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 4.3e-56 222.2 236 52.5
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 7.3e-56 221.5 236 53.0
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.6e-55 220.3 234 53.4
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 2.1e-55 219.9 232 53.4
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 2.8e-55 219.5 230 55.7
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 3.6e-55 219.2 239 50.6
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 8.1e-55 218.0 236 51.7
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 9.0e-54 214.5 239 52.7
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 3.4e-53 212.6 237 53.2
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 5.8e-53 211.8 242 48.8
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 2.9e-52 209.5 240 49.2
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 3.8e-52 209.1 239 49.4
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 8.4e-52 208.0 234 51.3
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 2.4e-51 206.5 246 49.6
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 9.3e-51 204.5 123 86.2
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 4.6e-50 202.2 206 59.2
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 4.6e-50 202.2 249 47.4
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 6.0e-50 201.8 232 50.4
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.3e-49 199.9 246 49.2
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 3.0e-49 199.5 222 50.9
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 3.9e-49 199.1 232 50.0
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 3.9e-49 199.1 232 50.0
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 5.1e-49 198.7 232 49.6
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 8.7e-49 198.0 240 50.8
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.6e-47 193.7 220 50.5
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 2.1e-47 193.4 194 56.7
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 2.8e-47 193.0 204 54.4
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 2.4e-46 189.9 233 49.4
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 9.9e-45 184.5 222 50.0
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 2.9e-44 183.0 196 53.6
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 8.4e-44 181.4 226 46.9
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 1.1e-43 181.0 239 44.4
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 1.9e-43 180.3 239 44.4
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 4.2e-43 179.1 188 55.3
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 1.2e-42 177.6 133 69.2
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 1.6e-42 177.2 230 47.4
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 1.6e-42 177.2 235 42.6
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 3.5e-42 176.0 236 43.6
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 4.6e-42 175.6 237 43.5
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 6.0e-42 175.3 204 50.0
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 5.1e-41 172.2 189 51.9
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 5.1e-41 172.2 234 42.3
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 6.7e-41 171.8 121 71.1
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 2.5e-40 169.9 235 43.0
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 1.3e-39 167.5 237 42.6
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 2.1e-39 166.8 235 42.1
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 4.8e-39 165.6 221 42.5
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 1.1e-38 164.5 235 42.1
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 4.0e-38 162.5 170 54.7
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 4.0e-38 162.5 122 67.2
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 2.0e-37 160.2 237 40.5
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 2.0e-37 160.2 234 41.5
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 5.8e-37 158.7 204 47.5
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 2.9e-36 156.4 182 50.0
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 4.9e-36 155.6 238 40.3
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 1.9e-35 153.7 241 39.8
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 5.5e-35 152.1 237 41.4
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 7.1e-35 151.8 241 39.0
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 7.1e-35 151.8 241 39.0
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 1.6e-34 150.6 238 39.5
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 1.6e-34 150.6 234 41.0
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 6.0e-34 148.7 125 63.2
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 3.0e-33 146.4 167 51.5
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 8.7e-33 144.8 229 39.7
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 4.3e-32 142.5 131 60.3
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 2.1e-31 140.2 229 38.9
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 1.9e-27 127.1 198 39.9
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 3.2e-27 126.3 247 34.8
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 5.5e-27 125.6 245 33.5
vmacro22616 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 4.6e-26 122.5 75 78.7
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 7.9e-26 121.7 178 41.6
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 2.3e-25 120.2 245 33.1
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 2.3e-25 120.2 237 34.6
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 1.1e-24 117.9 255 31.8
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 1.9e-24 117.1 241 32.8
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 4.3e-24 115.9 124 50.8
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 7.4e-24 115.2 110 58.2
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 9.7e-24 114.8 131 48.1
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 3.7e-23 112.8 246 32.5
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 6.3e-23 112.1 241 31.5
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 4.1e-22 109.4 246 32.1
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 4.1e-22 109.4 246 32.1
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 3.8e-20 102.8 128 49.2
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 1.4e-19 100.9 240 30.8
Nitab4.5_0000925g0110 Nicotiana tabacum HOM05D005184 ORTHO05D006222 1.4e-17 94.4 76 64.5
Solyc04g025670.4 Solanum lycopersicum HOM05D005184 ORTHO05D006222 1.4e-17 94.4 59 78.0
vmacro22617 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 1.8e-17 94.0 55 83.6
Prupe.1G258600 Prunus persica HOM05D005184 ORTHO05D006222 2.3e-17 93.6 54 85.2
Cre10.g421850 Chlamydomonas reinhardtii HOM05D005184 ORTHO05D006222 7.4e-16 88.6 229 28.4
QL03p062286 Quercus lobata HOM05D005184 ORTHO05D006222 2.2e-15 87.0 49 85.7
CSS0046251 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 3.1e-14 83.2 55 72.7
Cc00_g05590 Coffea canephora HOM05D005184 ORTHO05D006222 2.0e-13 80.5 81 54.3
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 5.9e-13 79.0 232 26.7
BcaB05g24540 Brassica carinata HOM05D005184 ORTHO05D006222 1.3e-12 77.8 194 30.4
Peaxi162Scf00792g00021 Petunia axillaris HOM05D005184 ORTHO05D006222 2.9e-12 76.6 44 84.1
Cc00_g11840 Coffea canephora HOM05D001087 ORTHO05D006222 3.8e-12 76.3 70 57.1
RcHm_v2.0_Chr4g0444371 Rosa chinensis HOM05D005184 ORTHO05D006222 1.8e-09 67.4 39 74.4
MCO16G256 Micromonas commoda HOM05D005184 ORTHO05D006222 2.3e-09 67.0 218 28.0
BcaB02g09680 Brassica carinata HOM05D000630 ORTHO05D014858 3.0e-09 66.6 78 42.3
Cfa024934 Carpinus fangiana HOM05D006964 ORTHO05D008861 1.3e-07 61.2 124 37.1


User provided reference genes

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