Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.G3VBDM Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 3489.1 1810 100.0
arahy.Tifrunner.gnm1.ann1.VEQ9JC Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 3440.2 1815 98.7
Glyma.14G036800 Glycine max HOM05D004500 ORTHO05D005775 0.0e+00 2991.4 1805 85.1
Lalb_Chr10g0106121 Lupinus albus HOM05D004500 ORTHO05D005775 0.0e+00 2985.3 1798 85.2
TPR.G16395 Trifolium pratense HOM05D004500 ORTHO05D005775 0.0e+00 2946.8 1798 83.9
Ca_06188_v3 Cicer arietinum L. HOM05D004500 ORTHO05D005775 0.0e+00 2941.8 1812 83.6
Phvul.008G203200 Phaseolus vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 2916.3 1804 83.6
Medtr5g089000 Medicago truncatula HOM05D004500 ORTHO05D005775 0.0e+00 2913.6 1810 83.1
LjContig00564g0025272 Lotus japonicus HOM05D004500 ORTHO05D005775 0.0e+00 2898.2 1802 83.0
Psat0s2305g0080 Pisum sativum HOM05D004500 ORTHO05D005775 0.0e+00 2772.3 1776 81.1
Cfa009915 Carpinus fangiana HOM05D004500 ORTHO05D005775 0.0e+00 2615.9 1817 74.1
QL01p016442 Quercus lobata HOM05D004500 ORTHO05D005775 0.0e+00 2542.7 1868 70.2
CiPaw.13G147900 Carya illinoinensis HOM05D004500 ORTHO05D005775 0.0e+00 2537.3 1801 72.3
Prupe.4G270300 Prunus persica HOM05D004500 ORTHO05D005775 0.0e+00 2520.7 1815 72.0
Potri.001G274500 Populus trichocarpa HOM05D004500 ORTHO05D005775 0.0e+00 2511.1 1813 70.9
Manes.02G138300 Manihot esculenta HOM05D004500 ORTHO05D005775 0.0e+00 2508.8 1806 71.2
Sabra16G0169000 Salix brachista HOM05D004500 ORTHO05D005775 0.0e+00 2499.9 1818 70.3
Duzib168G0672 Durio zibethinus HOM05D004500 ORTHO05D005775 0.0e+00 2497.2 1813 70.5
Gorai.006G122400 Gossypium raimondii HOM05D004500 ORTHO05D005775 0.0e+00 2494.9 1815 70.4
CANSAT54G2073 Cannabis sativa HOM05D004500 ORTHO05D005775 0.0e+00 2489.9 1808 70.1
MD03G1157000 Malus domestica HOM05D004500 ORTHO05D005775 0.0e+00 2472.2 1810 70.3
Ciclev10014018m.g Citrus clementina HOM05D004500 ORTHO05D005775 0.0e+00 2469.5 1805 70.0
Gohir.D09G105200 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 2467.6 1814 69.8
TAR623G1318 Trochodendron aralioides HOM05D004500 ORTHO05D005775 0.0e+00 2459.5 1801 69.4
TWI75G0701 Tripterygium wilfordii HOM05D004500 ORTHO05D005775 0.0e+00 2457.2 1812 69.9
Dinv22199 Davidia involucrata HOM05D004500 ORTHO05D005775 0.0e+00 2452.2 1816 69.8
Atru.chr3.2856 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 2445.6 1828 69.0
Atru.chr3.2854 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 2441.4 1828 68.9
RcHm_v2.0_Chr5g0051931 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2424.8 1814 68.9
FAN21G1747 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2422.1 1803 69.0
FvH4_3g28920 Fragaria vesca HOM05D004500 ORTHO05D005775 0.0e+00 2416.0 1801 69.0
Eucgr.J00673 Eucalyptus grandis HOM05D004500 ORTHO05D005775 0.0e+00 2409.8 1807 67.9
MELO3C014542.2 Cucumis melo HOM05D004500 ORTHO05D005775 0.0e+00 2388.6 1815 68.2
CsaV3_6G038790 Cucumis sativus L. HOM05D004500 ORTHO05D005775 0.0e+00 2387.5 1818 67.7
ECA233G3879 Erigeron canadensis HOM05D004500 ORTHO05D005775 0.0e+00 2381.7 1801 66.5
ClCG02G022670 Citrullus lanatus HOM05D004500 ORTHO05D005775 0.0e+00 2380.1 1829 67.9
FAN11G1622 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2379.7 1825 67.7
HanXRQChr12g0380331 Helianthus annuus HOM05D004500 ORTHO05D005775 0.0e+00 2369.0 1809 66.2
Sed0001243 Sechium edule HOM05D004500 ORTHO05D005775 0.0e+00 2360.1 1806 67.1
FAN25G3650 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2356.3 1803 67.6
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2352.0 1805 67.0
Lsat_1_v5_gn_5_70881 Lactuca sativa HOM05D004500 ORTHO05D005775 0.0e+00 2350.1 1809 66.2
THA.LOC104800461 Tarenaya hassleriana HOM05D004500 ORTHO05D005775 0.0e+00 2346.6 1803 66.9
RcHm_v2.0_Chr5g0051871 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2338.5 1808 67.1
Migut.D00681 Erythranthe guttata HOM05D004500 ORTHO05D005775 0.0e+00 2335.8 1804 66.1
Nn7g36895 Nelumbo nucifera HOM05D004500 ORTHO05D005775 0.0e+00 2332.8 1804 66.4
Sopen11g024300 Solanum pennellii HOM05D004500 ORTHO05D005775 0.0e+00 2326.2 1805 65.7
Aqoxy1G00409 Aquilegia oxysepala HOM05D004500 ORTHO05D005775 0.0e+00 2319.7 1812 65.3
CAN.G1050.5 Capsicum annuum HOM05D004500 ORTHO05D005775 0.0e+00 2302.7 1810 65.2
SalBow6G2693 Salvia bowleyana HOM05D004500 ORTHO05D005775 0.0e+00 2299.2 1808 65.0
CSS0026558 Camellia sinensis var. sinensis HOM05D004500 ORTHO05D005775 0.0e+00 2297.7 1833 65.0
Cc01_g06520 Coffea canephora HOM05D004500 ORTHO05D005775 0.0e+00 2292.7 1813 65.3
MSTRG.21337 Avicennia marina HOM05D004500 ORTHO05D005775 0.0e+00 2288.8 1808 64.3
Sc09g0001130 Simmondsia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2288.5 1812 65.8
GSVIVG01037358001 Vitis vinifera HOM05D004500 ORTHO05D005775 0.0e+00 2286.5 2361 53.9
EL10Ac4g10085 Beta vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 2269.2 1802 64.5
AUR62000221 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 2268.8 1803 64.8
AUR62006566 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 2268.0 1815 64.5
MBI19_g07497_MAGBIO Magnolia biondii HOM05D004500 ORTHO05D005775 0.0e+00 2249.6 1807 64.5
AT2G26780 Arabidopsis thaliana HOM05D004500 ORTHO05D005775 0.0e+00 2246.9 1809 64.0
AL4G19970 Arabidopsis lyrata HOM05D004500 ORTHO05D005775 0.0e+00 2244.2 1804 64.1
Thhalv10011180m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 0.0e+00 2241.8 1818 63.8
CARHR118960 Cardamine hirsuta HOM05D004500 ORTHO05D005775 0.0e+00 2235.3 1793 64.0
Hund07422 Selenicereus undatus HOM05D004500 ORTHO05D005775 0.0e+00 2234.1 1986 59.9
Aa31LG5G9010 Aethionema arabicum HOM05D004500 ORTHO05D005775 0.0e+00 2227.6 1811 63.8
Carub.0004s0721 Capsella rubella HOM05D004500 ORTHO05D005775 0.0e+00 2226.1 1799 63.4
A08p01100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 2219.9 1817 63.5
C03p92100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 2213.3 1811 63.4
Sp1g40640 Schrenkiella parvula HOM05D004500 ORTHO05D005775 0.0e+00 2211.0 1798 63.3
SGA_v2.0_scaffold29G12209 Striga asiatica HOM05D004500 ORTHO05D005775 0.0e+00 2201.8 1840 62.3
Nitab4.5_0000492g0190 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 2197.2 1805 63.3
Oeu061692.5 Olea europaea HOM05D004500 ORTHO05D005775 0.0e+00 2165.6 1886 61.3
BolC3t21527H Brassica oleracea HOM05D004500 ORTHO05D005775 0.0e+00 2155.6 1821 62.0
BraA08t32166Z Brassica rapa HOM05D004500 ORTHO05D005775 0.0e+00 2154.8 1830 61.8
ATR0307G114 Amborella trichopoda HOM05D004500 ORTHO05D005775 0.0e+00 2123.6 1793 61.0
Gohir.A09G108500 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 2027.3 1478 70.2
Zm00001eb196280 Zea mays HOM05D004500 ORTHO05D005775 0.0e+00 2016.5 1813 57.8
PSO339G3895 Papaver somniferum HOM05D004500 ORTHO05D005775 0.0e+00 1926.4 1498 66.2
Thecc.09G254300 Theobroma cacao HOM05D004500 ORTHO05D005775 0.0e+00 1922.1 1391 70.5
Solyc11g062310.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 0.0e+00 1840.5 1354 68.8
Peaxi162Scf00029g02524 Petunia axillaris HOM05D004500 ORTHO05D005775 0.0e+00 1795.4 1327 69.4
DCAR_023834 Daucus carota HOM05D004500 ORTHO05D005775 0.0e+00 1790.8 1392 66.5
COL.COLO4_06617 Corchorus olitorius HOM05D004500 ORTHO05D005775 0.0e+00 1765.4 1299 69.6
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 0.0e+00 1741.1 1347 68.5
AagrBONN_evm.TU.Sc2ySwM_117.694 Anthoceros agrestis HOM05D004500 ORTHO05D005775 0.0e+00 1640.9 1855 48.1
Lj1C1068G11 Lonicera japonica HOM05D004500 ORTHO05D005775 0.0e+00 1609.0 1339 63.4
unitig_578.g16660 Utricularia gibba HOM05D004500 ORTHO05D005775 0.0e+00 1604.7 1826 50.3
Mapoly0009s0155 Marchantia polymorpha HOM05D004500 ORTHO05D005775 0.0e+00 1588.5 1865 46.8
Rhsim13G0205000 Rhododendron simsii HOM05D004500 ORTHO05D005775 0.0e+00 1577.0 1231 66.3
Pp3c1_28010 Physcomitrium patens HOM05D004500 ORTHO05D005775 0.0e+00 1550.4 1877 46.4
Ah.06g194800 Amaranthus hybridus HOM05D004500 ORTHO05D005775 0.0e+00 1497.6 1150 66.8
SMO228G0054 Selaginella moellendorffii HOM05D004500 ORTHO05D005775 0.0e+00 1451.4 1639 48.4
Nitab4.5_0002026g0140 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 1415.2 1086 67.2
BcaB04g17016 Brassica carinata HOM05D004500 ORTHO05D005775 0.0e+00 1325.5 1351 56.0
Os11g0137300 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 0.0e+00 1291.2 1119 59.7
CDE02G2423 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 0.0e+00 1163.7 1049 57.9
Os12g0134200 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 0.0e+00 1114.0 905 62.2
CBR_g37490 Chara braunii HOM05D004500 ORTHO05D005775 1.2e-283 981.1 1667 36.0
SEGI_14316 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.3e-282 977.6 886 56.8
MCO04G062 Micromonas commoda HOM05D004500 ORTHO05D005775 1.5e-251 874.4 1737 34.0
Psat7g231400 Pisum sativum HOM05D004500 ORTHO05D005775 2.5e-246 857.1 599 74.8
PRCOL_00001646 Prasinoderma coloniale HOM05D004500 ORTHO05D005775 3.4e-243 846.7 1730 33.8
Cpa.g.sc34.185 Carica papaya HOM05D004500 ORTHO05D005775 2.9e-234 817.0 634 66.7
HPP92_022829 Vanilla planifolia HOM05D004500 ORTHO05D005775 2.0e-227 794.3 788 52.7
VMungo0647G1179 Vigna mungo HOM05D004500 ORTHO05D005775 2.1e-213 747.7 455 86.4
Cpa.g.sc34.186 Carica papaya HOM05D004500 ORTHO05D005775 2.6e-203 714.1 496 72.4
Psat7g231320 Pisum sativum HOM05D004500 ORTHO05D005775 5.9e-187 659.8 450 77.1
COL.COLO4_06618 Corchorus olitorius HOM05D004500 ORTHO05D005775 3.8e-178 630.6 441 73.0
Os12g0148400 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 2.2e-173 614.8 672 50.4
Cre04.g217935 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 5.2e-167 593.6 2045 27.6
Haze_23272 Corylus avellana HOM05D004500 ORTHO05D005775 6.8e-159 566.6 456 68.0
SEGI_37322 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.2e-155 555.8 503 57.7
Psat6g216840 Pisum sativum HOM05D004500 ORTHO05D005775 9.8e-150 536.2 315 85.7
vmacro04081 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 5.6e-145 520.4 347 73.2
FAN21G2043 Fragaria x ananassa HOM05D004500 ORTHO05D005775 5.1e-122 444.1 361 65.9
CDE02G1339 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 1.6e-120 439.1 825 35.5
Cfa026787 Carpinus fangiana HOM05D004500 ORTHO05D005775 9.9e-110 403.3 1609 24.3
Peaxi162Scf00029g02523 Petunia axillaris HOM05D004500 ORTHO05D005775 1.7e-101 375.9 281 67.6
Solyc11g062320.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 2.3e-98 365.5 282 66.0
Nitab4.5_0002026g0160 Nicotiana tabacum HOM05D004500 ORTHO05D005775 1.3e-96 359.8 284 64.8
vmacro04082 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 1.0e-77 297.0 161 88.8
Hma1.2p1_0460F.1_g157660 Hydrangea macrophylla HOM05D004500 ORTHO05D005775 1.8e-71 276.2 194 72.2
vmacro04079 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 7.2e-68 264.2 270 53.3
Psat0s1467g0200 Pisum sativum HOM05D004500 ORTHO05D005775 2.4e-63 249.2 176 73.9
Psat5g143880 Pisum sativum HOM05D004500 ORTHO05D001434 9.1e-63 247.3 176 73.3
HPP92_022831 Vanilla planifolia HOM05D004500 ORTHO05D005775 4.2e-60 238.4 340 41.2
Lj1C1068G17 Lonicera japonica HOM05D004500 ORTHO05D009839 6.1e-59 234.6 339 45.4
SEGI_21027 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.4e-55 223.4 206 55.8
Gohir.A09G108566 Gossypium hirsutum HOM05D004500 ORTHO05D005775 5.3e-55 221.5 163 68.1
Psat6g216720 Pisum sativum HOM05D004500 ORTHO05D005775 2.9e-53 215.7 130 84.6
Thhalv10012226m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 7.5e-49 201.1 332 42.2
EL10Ac5g11937 Beta vulgaris HOM05D004500 ORTHO05D005775 2.8e-48 199.1 190 54.7
vmacro04083 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 1.6e-46 193.4 148 70.3
MELO3C032687.2 Cucumis melo HOM05D004500 ORTHO05D005775 4.5e-46 191.8 147 66.7
BcaC01g01445 Brassica carinata HOM05D004500 ORTHO05D005775 4.2e-44 185.3 142 69.7
PSO339G2400 Papaver somniferum HOM05D004500 ORTHO05D005775 2.2e-40 172.9 281 39.5
VMungo0647G0474 Vigna mungo HOM05D004500 ORTHO05D005775 4.9e-40 171.8 167 61.1
CDE02G1487 Ceratophyllum demersum HOM05D004500 ORTHO05D028702 1.2e-38 167.2 213 40.8
arahy.Tifrunner.gnm1.ann1.K04MEX Arachis hypogaea HOM05D004500 ORTHO05D005775 7.3e-36 157.9 153 62.7
SEGI_00521 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 7.5e-33 147.9 256 37.5
Solyc11g062300.3 Solanum lycopersicum HOM05D004500 ORTHO05D028702 1.6e-30 140.2 169 42.0
Psat2g099920 Pisum sativum HOM05D001218 ORTHO05D015696 8.6e-29 134.4 88 75.0
MELO3C033637.2 Cucumis melo HOM05D007110 ORTHO05D000233 1.6e-27 130.2 147 50.3
Psat2g090360 Pisum sativum HOM05D001218 ORTHO05D015696 3.1e-26 125.9 73 83.6
Lj1A1068G47 Lonicera japonica HOM05D004500 ORTHO05D005775 3.7e-24 119.0 78 75.6
SEGI_03367 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.4e-23 117.1 158 43.7
Psat0s2295g0160 Pisum sativum HOM05D003609 ORTHO05D004185 8.6e-21 107.8 68 80.9
Cre04.g217942 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 3.3e-20 105.9 198 30.3
MELO3C035575.2 Cucumis melo HOM05D004500 ORTHO05D005775 7.3e-20 104.8 92 55.4
Peaxi162Scf00029g02525 Petunia axillaris HOM05D004500 ORTHO05D028702 2.1e-19 103.2 167 34.7
SEGI_00784 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 3.1e-18 99.4 84 53.6
SEGI_28959 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 1.5e-17 97.1 156 37.2
Lj1A1068G46 Lonicera japonica HOM05D001538 ORTHO05D011045 2.0e-17 96.7 92 56.5
SEGI_16541 Sequoiadendron giganteum HOM05D004500 ORTHO05D011045 3.5e-14 85.9 55 67.3
HPP92_022828 Vanilla planifolia HOM05D004500 ORTHO05D005775 2.3e-13 83.2 72 63.9
TPR.G24491 Trifolium pratense HOM05D003400 ORTHO05D003687 5.6e-12 78.6 78 59.0
SEGI_07125 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 3.6e-11 75.9 113 42.5
MD12G1083300 Malus domestica HOM05D004500 ORTHO05D005775 1.4e-10 73.9 64 67.2
SEGI_01442 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 1.4e-10 73.9 115 35.7
Nitab4.5_0004629g0080 Nicotiana tabacum HOM05D004500 ORTHO05D028702 2.4e-10 73.2 88 42.0
EL10Ac5g12062 Beta vulgaris HOM05D004500 ORTHO05D005775 1.2e-09 70.9 60 56.7
vmacro04080 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 1.2e-06 60.8 38 73.7


User provided reference genes

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