Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.FZV4HQ Arachis hypogaea HOM05D004418 ORTHO05D005222 1.5e-164 582.8 297 100.0
arahy.Tifrunner.gnm1.ann1.I4UW8B Arachis hypogaea HOM05D004418 ORTHO05D005222 1.5e-164 582.8 297 100.0
Glyma.18G281000 Glycine max HOM05D004418 ORTHO05D005222 1.1e-117 427.2 309 76.1
Lj1g0022779 Lotus japonicus HOM05D004418 ORTHO05D005222 4.7e-110 401.7 315 72.1
Glyma.08G256900 Glycine max HOM05D004418 ORTHO05D005222 2.9e-107 392.5 309 71.8
TPR.G4552 Trifolium pratense HOM05D004418 ORTHO05D005222 5.4e-106 388.3 321 72.6
VMungo1383G2014 Vigna mungo HOM05D004418 ORTHO05D005222 7.8e-105 384.4 307 70.0
Phvul.008G020100 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 3.1e-101 372.5 310 68.7
Psat3g190400 Pisum sativum HOM05D004418 ORTHO05D005222 2.0e-100 369.8 320 69.1
Thecc.04G137500 Theobroma cacao HOM05D004418 ORTHO05D005222 1.7e-99 366.7 316 68.0
Cfa007945 Carpinus fangiana HOM05D004418 ORTHO05D005222 1.9e-98 363.2 318 67.9
Prupe.3G239700 Prunus persica HOM05D004418 ORTHO05D005222 1.9e-95 353.2 316 67.4
Medtr7g018370 Medicago truncatula HOM05D004418 ORTHO05D005222 3.3e-95 352.4 317 66.9
Phvul.004G062900 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 4.3e-95 352.1 317 65.3
Glyma.13G046900 Glycine max HOM05D004418 ORTHO05D005222 2.8e-94 349.4 320 65.0
Lalb_Chr06g0174671 Lupinus albus HOM05D004418 ORTHO05D005222 1.8e-93 346.7 315 64.4
Glyma.19G045400 Glycine max HOM05D004418 ORTHO05D005222 1.3e-91 340.5 326 63.8
CiPaw.03G059700 Carya illinoinensis HOM05D004418 ORTHO05D005222 1.7e-91 340.1 302 66.2
CiPaw.04G040400 Carya illinoinensis HOM05D004418 ORTHO05D005222 4.9e-91 338.6 316 65.5
QL02p052558 Quercus lobata HOM05D004418 ORTHO05D005222 8.4e-91 337.8 318 65.4
Lalb_Chr10g0092251 Lupinus albus HOM05D004418 ORTHO05D005222 5.4e-90 335.1 312 65.1
TPR.G32452 Trifolium pratense HOM05D004418 ORTHO05D005222 6.0e-89 331.6 322 64.3
VMungo0464G1669 Vigna mungo HOM05D004418 ORTHO05D005222 7.9e-89 331.3 316 62.0
Cpa.g.sc179.25 Carica papaya HOM05D004418 ORTHO05D005222 2.3e-88 329.7 336 60.1
Medtr6g017240 Medicago truncatula HOM05D004418 ORTHO05D005222 3.0e-88 329.3 315 64.1
Ciclev10012140m.g Citrus clementina HOM05D004418 ORTHO05D005222 7.4e-87 324.7 343 60.1
GSVIVG01036443001 Vitis vinifera HOM05D004418 ORTHO05D005222 7.4e-87 324.7 307 63.8
MD17G1074300 Malus domestica HOM05D004418 ORTHO05D005222 1.3e-86 323.9 315 63.5
COL.COLO4_16191 Corchorus olitorius HOM05D004418 ORTHO05D005222 1.4e-85 320.5 247 74.1
Potri.017G112600 Populus trichocarpa HOM05D004418 ORTHO05D005222 5.3e-85 318.5 321 61.1
Gohir.A07G071400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 3.4e-84 315.8 305 62.6
Haze_14129 Corylus avellana HOM05D004418 ORTHO05D005222 6.4e-83 311.6 284 68.7
RcHm_v2.0_Chr2g0163131 Rosa chinensis HOM05D004418 ORTHO05D005222 1.1e-82 310.8 313 60.4
Potri.004G102200 Populus trichocarpa HOM05D004418 ORTHO05D005222 2.5e-82 309.7 323 59.4
Gohir.D07G075900 Gossypium hirsutum HOM05D004418 ORTHO05D005222 7.1e-82 308.1 305 61.6
MD09G1084800 Malus domestica HOM05D004418 ORTHO05D005222 9.3e-82 307.8 316 61.4
Sabra04G0078200 Salix brachista HOM05D004418 ORTHO05D005222 1.2e-81 307.4 318 61.3
Lj2g0026691 Lotus japonicus HOM05D004418 ORTHO05D005222 2.1e-81 306.6 285 64.6
Gorai.001G080100 Gossypium raimondii HOM05D004418 ORTHO05D005222 2.7e-81 306.2 305 61.3
TAR462G0001 Trochodendron aralioides HOM05D004418 ORTHO05D005222 1.0e-80 304.3 301 61.8
Manes.01G108300 Manihot esculenta HOM05D004418 ORTHO05D005222 3.0e-80 302.8 248 69.0
FAN14G2637 Fragaria x ananassa HOM05D004418 ORTHO05D005222 5.1e-80 302.0 313 59.4
ClCG11G005360 Citrullus lanatus HOM05D004418 ORTHO05D005222 2.5e-79 299.7 309 60.8
CANSAT64G2567 Cannabis sativa HOM05D004418 ORTHO05D005222 3.3e-79 299.3 314 58.9
FvH4_6g45350 Fragaria vesca HOM05D004418 ORTHO05D005222 5.6e-79 298.5 313 58.8
FAN05G3990 Fragaria x ananassa HOM05D004418 ORTHO05D005222 5.6e-79 298.5 311 59.5
Nitab4.5_0004118g0100 Nicotiana tabacum HOM05D004418 ORTHO05D005222 4.8e-78 295.4 332 56.3
Sopen02g030440 Solanum pennellii HOM05D004418 ORTHO05D005222 8.2e-78 294.7 321 57.9
CsaV3_5G039140 Cucumis sativus L. HOM05D004418 ORTHO05D005222 1.1e-77 294.3 303 60.1
Solyc02g085750.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 1.4e-77 293.9 328 56.4
Dinv34848 Davidia involucrata HOM05D004418 ORTHO05D005222 3.1e-77 292.7 277 66.4
Sed0007454 Sechium edule HOM05D004418 ORTHO05D005222 5.3e-77 292.0 312 59.6
FAN02G0751 Fragaria x ananassa HOM05D004418 ORTHO05D005222 6.9e-77 291.6 304 59.5
Nitab4.5_0000628g0180 Nicotiana tabacum HOM05D004418 ORTHO05D005222 6.9e-77 291.6 305 57.0
Eucgr.F02480 Eucalyptus grandis HOM05D004418 ORTHO05D005222 2.0e-76 290.0 329 55.6
Duzib133G1448 Durio zibethinus HOM05D004418 ORTHO05D005222 1.0e-75 287.7 267 64.4
Nn4g23746 Nelumbo nucifera HOM05D004418 ORTHO05D005222 1.3e-75 287.3 304 58.9
Gohir.D11G168666 Gossypium hirsutum HOM05D004418 ORTHO05D005222 8.4e-75 284.6 308 59.1
Nitab4.5_0008781g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 1.4e-74 283.9 337 54.9
Cc07_g09010 Coffea canephora HOM05D004418 ORTHO05D005222 1.9e-74 283.5 294 60.9
Gorai.007G180200 Gossypium raimondii HOM05D004418 ORTHO05D005222 5.5e-74 282.0 306 58.2
ClCG05G012070 Citrullus lanatus HOM05D004418 ORTHO05D005222 9.3e-74 281.2 315 56.5
Gohir.A11G162400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 2.1e-73 280.0 308 58.4
CsaV3_3G020330 Cucumis sativus L. HOM05D004418 ORTHO05D005222 4.6e-73 278.9 313 55.6
MELO3C023762.2 Cucumis melo HOM05D004418 ORTHO05D005222 2.3e-72 276.6 313 55.3
Nn3g17760 Nelumbo nucifera HOM05D004418 ORTHO05D005222 5.1e-72 275.4 296 59.8
Psat1g012960 Pisum sativum HOM05D004418 ORTHO05D005222 8.7e-72 274.6 266 64.7
PGSC0003DMG400024185 Solanum tuberosum HOM05D004418 ORTHO05D005222 8.7e-72 274.6 329 52.0
Hma1.2p1_0550F.1_g177250 Hydrangea macrophylla HOM05D004418 ORTHO05D005222 7.4e-71 271.6 305 59.3
CAN.G23.16 Capsicum annuum HOM05D004418 ORTHO05D005222 9.7e-71 271.2 338 51.2
MSTRG.23562 Avicennia marina HOM05D004418 ORTHO05D005222 2.8e-70 269.6 320 54.4
Actinidia15868 Actinidia chinensis HOM05D004418 ORTHO05D005222 3.7e-70 269.2 231 66.2
Sopen02g014090 Solanum pennellii HOM05D004418 ORTHO05D005222 4.8e-70 268.9 317 51.7
Atru.chr8.826 Acer truncatum HOM05D004418 ORTHO05D005222 8.2e-70 268.1 306 56.9
Solyc02g063030.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 8.2e-70 268.1 320 51.9
Oeu030758.1 Olea europaea HOM05D004418 ORTHO05D005222 1.4e-69 267.3 223 68.2
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 2.4e-69 266.5 247 63.6
Actinidia36309 Actinidia chinensis HOM05D004418 ORTHO05D005222 4.1e-69 265.8 291 56.4
TWI75G1693 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 4.1e-69 265.8 294 55.4
CAN.G358.137 Capsicum annuum HOM05D004418 ORTHO05D005222 3.4e-68 262.7 248 62.9
CSS0011812 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 7.7e-68 261.5 311 57.2
Sabra17G0093300 Salix brachista HOM05D004418 ORTHO05D005222 2.2e-67 260.0 263 62.0
Oeu052993.1 Olea europaea HOM05D004418 ORTHO05D005222 1.4e-66 257.3 224 64.7
Sed0007873 Sechium edule HOM05D004418 ORTHO05D005222 5.5e-66 255.4 312 52.9
DCAR_017217 Daucus carota HOM05D004418 ORTHO05D005222 7.9e-65 251.5 256 62.5
Dinv33929 Davidia involucrata HOM05D004418 ORTHO05D005222 1.5e-63 247.3 281 60.9
THA.LOC104803001 Tarenaya hassleriana HOM05D004418 ORTHO05D005222 2.8e-62 243.0 300 52.7
TAR278G0004 Trochodendron aralioides HOM05D004418 ORTHO05D005222 6.3e-62 241.9 296 54.7
arahy.Tifrunner.gnm1.ann1.SB4BUV Arachis hypogaea HOM05D004418 ORTHO05D005222 1.8e-61 240.4 327 50.5
MELO3C022089.2 Cucumis melo HOM05D004418 ORTHO05D005222 2.4e-61 240.0 162 77.8
EL10Ac2g04606 Beta vulgaris HOM05D004418 ORTHO05D005222 3.1e-61 239.6 333 50.2
CSS0030087 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 3.1e-61 239.6 344 52.3
Peaxi162Scf01327g00136 Petunia axillaris HOM05D004418 ORTHO05D005222 5.3e-61 238.8 285 56.5
Aqoxy3G00366 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 2.2e-59 233.4 294 51.7
PGR042G3608 Punica granatum HOM05D004418 ORTHO05D005222 5.0e-59 232.3 303 49.2
Aqoxy3G03921 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 2.5e-58 229.9 352 47.2
ECA246G2173 Erigeron canadensis HOM05D004418 ORTHO05D005222 1.2e-57 227.6 231 61.0
Ah.10g037550 Amaranthus hybridus HOM05D004418 ORTHO05D005222 2.7e-57 226.5 306 51.3
Nitab4.5_0007207g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 6.1e-57 225.3 250 56.8
Thhalv10014096m.g Eutrema salsugineum HOM05D004418 ORTHO05D005222 1.4e-56 224.2 312 51.6
Peaxi162Scf00501g00012 Petunia axillaris HOM05D004418 ORTHO05D005222 5.1e-56 222.2 321 47.7
MSTRG.3576 Avicennia marina HOM05D004418 ORTHO05D005222 6.7e-56 221.9 318 47.2
TWI79G1555 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 8.8e-56 221.5 316 47.5
HanXRQChr12g0376561 Helianthus annuus HOM05D004418 ORTHO05D005222 5.7e-55 218.8 293 49.8
CSS0000095 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 1.7e-54 217.2 241 59.8
Sp6g28100 Schrenkiella parvula HOM05D004418 ORTHO05D005222 2.2e-54 216.9 246 56.1
Hund13733 Selenicereus undatus HOM05D004418 ORTHO05D005222 1.1e-53 214.5 254 53.5
BolC9t58946H Brassica oleracea HOM05D004418 ORTHO05D005222 1.8e-53 213.8 249 55.4
BcaC04g18914 Brassica carinata HOM05D004418 ORTHO05D005222 3.1e-53 213.0 338 46.2
C09p60990 Brassica napus HOM05D004418 ORTHO05D005222 9.1e-53 211.5 249 55.0
BcaB01g05008 Brassica carinata HOM05D004418 ORTHO05D005222 1.2e-52 211.1 250 56.0
A10p23020 Brassica napus HOM05D004418 ORTHO05D005222 1.5e-52 210.7 263 54.0
BraA10t44371Z Brassica rapa HOM05D004418 ORTHO05D005222 1.5e-52 210.7 263 54.0
Aa31LG5G13000 Aethionema arabicum HOM05D004418 ORTHO05D005222 2.6e-52 209.9 241 53.9
AT5G16030 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 3.5e-52 209.5 252 57.1
AL6G26910 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 1.3e-51 207.6 329 48.3
BcaB08g36881 Brassica carinata HOM05D004418 ORTHO05D005222 1.3e-51 207.6 245 56.3
A03p07540 Brassica napus HOM05D004418 ORTHO05D005222 6.5e-51 205.3 320 47.2
Migut.L00303 Erythranthe guttata HOM05D004418 ORTHO05D005222 6.5e-51 205.3 309 49.8
C03p08770 Brassica napus HOM05D004418 ORTHO05D005222 1.1e-50 204.5 320 45.9
BraA03t10082Z Brassica rapa HOM05D004418 ORTHO05D005222 5.5e-50 202.2 325 46.2
BolC3t13373H Brassica oleracea HOM05D004418 ORTHO05D005222 7.2e-50 201.8 327 45.0
Aa31LG11G13580 Aethionema arabicum HOM05D004418 ORTHO05D005222 2.7e-49 199.9 305 48.5
PGR004G1179 Punica granatum HOM05D004418 ORTHO05D005222 1.4e-48 197.6 330 45.2
CARHR197280 Cardamine hirsuta HOM05D004418 ORTHO05D005222 2.3e-48 196.8 313 47.6
BcaNung02220 Brassica carinata HOM05D004418 ORTHO05D005222 3.0e-48 196.4 247 54.7
Carub.0006s1422 Capsella rubella HOM05D004418 ORTHO05D005222 8.8e-48 194.9 249 55.0
PSO017G3409 Papaver somniferum HOM05D004418 ORTHO05D005222 1.5e-47 194.1 283 47.7
PSO478G2162 Papaver somniferum HOM05D004418 ORTHO05D005222 2.6e-47 193.4 282 46.5
SGA_v2.0_scaffold33G13429 Striga asiatica HOM05D004418 ORTHO05D005222 7.4e-47 191.8 310 44.8
SalBow5G1629 Salvia bowleyana HOM05D004418 ORTHO05D005222 8.2e-46 188.3 292 45.9
CARHR076500 Cardamine hirsuta HOM05D004418 ORTHO05D005222 1.1e-45 188.0 246 50.4
A02p03360 Brassica napus HOM05D004418 ORTHO05D005222 1.4e-45 187.6 345 42.3
BcaC03g18465 Brassica carinata HOM05D004418 ORTHO05D005222 3.1e-45 186.4 261 48.7
C02p08130 Brassica napus HOM05D004418 ORTHO05D005222 3.1e-45 186.4 261 48.7
BraA02t05307Z Brassica rapa HOM05D004418 ORTHO05D005222 3.5e-44 183.0 346 42.2
arahy.Tifrunner.gnm1.ann1.554YPX Arachis hypogaea HOM05D004418 ORTHO05D005222 7.7e-44 181.8 304 43.8
AL3G11860 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 1.7e-43 180.6 297 46.8
Migut.H00200 Erythranthe guttata HOM05D004418 ORTHO05D005222 2.2e-43 180.3 305 45.9
AT3G02500 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 2.9e-43 179.9 302 44.4
MBI09_g05206_MAGBIO Magnolia biondii HOM05D004418 ORTHO05D005222 3.8e-43 179.5 269 46.8
Carub.0003s0161 Capsella rubella HOM05D004418 ORTHO05D005222 6.5e-43 178.7 294 44.9
Lj4A194T37 Lonicera japonica HOM05D004418 ORTHO05D005222 2.5e-42 176.8 224 56.2
BolC2t06735H Brassica oleracea HOM05D004418 ORTHO05D005222 4.2e-42 176.0 277 45.8
BcaC01g04442 Brassica carinata HOM05D004418 ORTHO05D005222 7.5e-39 165.2 206 52.9
Lsat_1_v5_gn_3_80201 Lactuca sativa HOM05D004418 ORTHO05D005222 2.8e-38 163.3 244 48.4
RcHm_v2.0_Chr4g0404491 Rosa chinensis HOM05D004418 ORTHO05D005222 5.3e-37 159.1 113 73.5
vmacro05572 Vaccinium macrocarpon HOM05D004418 ORTHO05D005222 1.2e-36 157.9 235 49.8
Ah.16g101950 Amaranthus hybridus HOM05D004418 ORTHO05D005222 2.5e-34 150.2 147 57.8
Oeu052991.1 Olea europaea HOM05D004418 ORTHO05D005222 3.2e-34 149.8 117 70.9
C03p40110 Brassica napus HOM05D004418 ORTHO05D005222 1.0e-32 144.8 290 40.7
BolC3t16277H Brassica oleracea HOM05D004418 ORTHO05D005222 1.0e-32 144.8 290 40.7
BraA03t12466Z Brassica rapa HOM05D004418 ORTHO05D005222 1.8e-32 144.1 288 39.9
A03p32980 Brassica napus HOM05D004418 ORTHO05D005222 3.0e-32 143.3 288 39.6
SalBow3G2364 Salvia bowleyana HOM05D004418 ORTHO05D005222 4.4e-31 139.4 266 39.8
SalBow3G3548 Salvia bowleyana HOM05D004418 ORTHO05D005222 4.8e-30 136.0 275 38.2
BcaC01g04556 Brassica carinata HOM05D004418 ORTHO05D005222 3.5e-28 129.8 290 39.3
Sc11g0008220 Simmondsia chinensis HOM05D004418 ORTHO05D005222 1.8e-24 117.5 150 50.7
SGA_v2.0_scaffold49G18089 Striga asiatica HOM05D004418 ORTHO05D005222 1.2e-23 114.8 221 38.9
ATR0686G091 Amborella trichopoda HOM05D004418 ORTHO05D005222 1.1e-21 108.2 168 47.6
unitig_32.g11894 Utricularia gibba HOM05D004418 ORTHO05D005222 3.6e-17 93.2 63 74.6
CAN.G144.13 Capsicum annuum HOM05D004418 ORTHO05D005222 1.8e-16 90.9 65 76.9
Sed0005383 Sechium edule HOM05D004418 ORTHO05D005222 3.2e-13 80.1 200 35.0


User provided reference genes

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