Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.FZI6FG Arachis hypogaea HOM05D006681 ORTHO05D008338 2.5e-175 618.6 306 100.0
arahy.Tifrunner.gnm1.ann1.SK7GFS Arachis hypogaea HOM05D006681 ORTHO05D008338 6.3e-174 614.0 305 99.0
Lalb_Chr03g0026931 Lupinus albus HOM05D006681 ORTHO05D008338 3.4e-135 485.3 287 81.2
Psat7g220640 Pisum sativum HOM05D006681 ORTHO05D008338 1.1e-133 480.3 298 79.5
TPR.G3006 Trifolium pratense HOM05D006681 ORTHO05D008338 9.1e-133 477.2 309 77.7
Ca_19209_v3 Cicer arietinum L. HOM05D006681 ORTHO05D008338 2.0e-132 476.1 309 77.0
Lj3g0002575 Lotus japonicus HOM05D006681 ORTHO05D008338 2.5e-130 469.2 297 77.8
Medtr4g062130 Medicago truncatula HOM05D006681 ORTHO05D008338 2.5e-130 469.2 298 77.2
Phvul.011G069100 Phaseolus vulgaris HOM05D006681 ORTHO05D008338 2.6e-127 459.1 302 76.2
VMungo1127G1059 Vigna mungo HOM05D006681 ORTHO05D008338 5.4e-125 451.4 313 73.2
TAR633G1649 Trochodendron aralioides HOM05D006681 ORTHO05D008338 5.0e-123 444.9 300 69.7
Ciclev10028948m.g Citrus clementina HOM05D006681 ORTHO05D008338 2.5e-122 442.6 285 74.7
Cfa011429 Carpinus fangiana HOM05D006681 ORTHO05D008338 4.3e-122 441.8 308 70.8
Nn2g10531 Nelumbo nucifera HOM05D006681 ORTHO05D008338 1.2e-121 440.3 299 69.2
QL01p034239 Quercus lobata HOM05D006681 ORTHO05D008338 1.2e-121 440.3 290 72.1
Glyma.12G075000 Glycine max HOM05D006681 ORTHO05D008338 6.1e-121 438.0 295 74.2
Atru.chr3.3798 Acer truncatum HOM05D006681 ORTHO05D008338 1.4e-120 436.8 285 71.6
CiPaw.13G101600 Carya illinoinensis HOM05D006681 ORTHO05D008338 1.4e-120 436.8 308 69.8
Thecc.09G329700 Theobroma cacao HOM05D006681 ORTHO05D008338 2.3e-120 436.0 287 72.1
Potri.009G026700 Populus trichocarpa HOM05D006681 ORTHO05D008338 5.2e-120 434.9 289 70.6
Gorai.009G102400 Gossypium raimondii HOM05D006681 ORTHO05D008338 1.5e-119 433.3 286 72.0
MD11G1116600 Malus domestica HOM05D006681 ORTHO05D008338 3.4e-119 432.2 288 69.8
Gohir.D05G098750 Gossypium hirsutum HOM05D006681 ORTHO05D008338 5.8e-119 431.4 286 71.7
Oeu040277.1 Olea europaea HOM05D006681 ORTHO05D008338 9.8e-119 430.6 285 73.0
Gohir.A05G098700 Gossypium hirsutum HOM05D006681 ORTHO05D008338 4.9e-118 428.3 286 71.3
CSS0025304 Camellia sinensis var. sinensis HOM05D006681 ORTHO05D008338 6.4e-118 427.9 287 70.0
CsaV3_6G022080 Cucumis sativus L. HOM05D006681 ORTHO05D008338 6.4e-118 427.9 287 69.7
GSVIVG01025054001 Vitis vinifera HOM05D006681 ORTHO05D008338 6.4e-118 427.9 283 71.0
FAN16G0358 Fragaria x ananassa HOM05D006681 ORTHO05D008338 1.4e-117 426.8 283 71.4
CSS0007914 Camellia sinensis var. sinensis HOM05D006681 ORTHO05D008338 1.9e-117 426.4 287 69.7
COL.COLO4_18427 Corchorus olitorius HOM05D006681 ORTHO05D008338 2.4e-117 426.0 286 71.0
Sabra09G0017800 Salix brachista HOM05D006681 ORTHO05D008338 2.4e-117 426.0 289 69.2
FvH4_3g34680 Fragaria vesca HOM05D006681 ORTHO05D008338 5.4e-117 424.9 283 71.4
FAN11G3596 Fragaria x ananassa HOM05D006681 ORTHO05D008338 5.4e-117 424.9 283 71.4
TWI31G0387 Tripterygium wilfordii HOM05D006681 ORTHO05D008338 7.0e-117 424.5 284 71.8
Cc01_g12140 Coffea canephora HOM05D006681 ORTHO05D008338 1.2e-116 423.7 288 69.8
Prupe.6G086900 Prunus persica HOM05D006681 ORTHO05D008338 1.2e-116 423.7 288 69.4
Sed0010670 Sechium edule HOM05D006681 ORTHO05D008338 1.2e-116 423.7 286 70.3
CAN.G1647.1 Capsicum annuum HOM05D006681 ORTHO05D008338 3.5e-116 422.2 286 69.9
THA.LOC104814870 Tarenaya hassleriana HOM05D006681 ORTHO05D008338 3.5e-116 422.2 286 70.6
Duzib170G0311 Durio zibethinus HOM05D006681 ORTHO05D008338 4.6e-116 421.8 307 67.1
Solyc11g072970.2 Solanum lycopersicum HOM05D006681 ORTHO05D008338 3.0e-115 419.1 286 70.3
RcHm_v2.0_Chr5g0062361 Rosa chinensis HOM05D006681 ORTHO05D008338 5.0e-115 418.3 306 68.3
Sopen11g030630 Solanum pennellii HOM05D006681 ORTHO05D008338 5.0e-115 418.3 286 69.6
CANSAT54G2145 Cannabis sativa HOM05D006681 ORTHO05D008338 8.6e-115 417.5 284 69.7
PGSC0003DMG400015551 Solanum tuberosum HOM05D006681 ORTHO05D008338 1.1e-114 417.2 283 71.4
HanXRQChr05g0134071 Helianthus annuus HOM05D006681 ORTHO05D008338 5.6e-114 414.8 287 71.1
Peaxi162Scf00411g00068 Petunia axillaris HOM05D006681 ORTHO05D008338 9.5e-114 414.1 289 67.8
FAN21G0481 Fragaria x ananassa HOM05D006681 ORTHO05D008338 2.1e-113 412.9 308 66.2
ECA236G1321 Erigeron canadensis HOM05D006681 ORTHO05D008338 4.7e-113 411.8 285 70.5
AL5G24960 Arabidopsis lyrata HOM05D006681 ORTHO05D008338 1.4e-112 410.2 284 68.7
ClCG02G020630 Citrullus lanatus HOM05D006681 ORTHO05D008338 5.2e-112 408.3 339 60.5
PGR119G1802 Punica granatum HOM05D006681 ORTHO05D008338 1.2e-111 407.1 322 64.3
AT3G46200 Arabidopsis thaliana HOM05D006681 ORTHO05D008338 2.6e-111 406.0 289 67.1
Lsat_1_v5_gn_8_78740 Lactuca sativa HOM05D006681 ORTHO05D008338 4.4e-111 405.2 280 69.6
Eucgr.J02098 Eucalyptus grandis HOM05D006681 ORTHO05D008338 5.8e-111 404.8 303 65.7
EL10Ac7g15941 Beta vulgaris HOM05D006681 ORTHO05D008338 9.8e-111 404.1 298 64.4
MBI14_g35939_MAGBIO Magnolia biondii HOM05D006681 ORTHO05D008338 9.8e-111 404.1 303 64.0
Carub.0005s1203 Capsella rubella HOM05D006681 ORTHO05D008338 4.9e-110 401.7 289 65.4
Aqoxy4G03072 Aquilegia oxysepala HOM05D006681 ORTHO05D008338 8.3e-110 401.0 301 65.4
Thhalv10002615m.g Eutrema salsugineum HOM05D006681 ORTHO05D008338 8.3e-110 401.0 289 67.1
DCAR_006014 Daucus carota HOM05D006681 ORTHO05D008338 9.2e-109 397.5 285 66.7
Nitab4.5_0002684g0160 Nicotiana tabacum HOM05D006681 ORTHO05D008338 1.6e-108 396.7 294 68.0
Migut.D02146 Erythranthe guttata HOM05D006681 ORTHO05D008338 4.6e-108 395.2 285 66.3
SalBow3G4078 Salvia bowleyana HOM05D006681 ORTHO05D008338 1.3e-107 393.7 285 67.0
Rhsim13G0088300 Rhododendron simsii HOM05D006681 ORTHO05D008338 1.7e-107 393.3 296 66.6
Carub.0003s2829 Capsella rubella HOM05D006681 ORTHO05D008338 3.9e-107 392.1 284 66.2
Sp5g15430 Schrenkiella parvula HOM05D006681 ORTHO05D008338 6.6e-107 391.3 285 66.3
Manes.11G136100 Manihot esculenta HOM05D006681 ORTHO05D008338 8.6e-107 391.0 291 67.4
BraA06t25188Z Brassica rapa HOM05D006681 ORTHO05D008338 1.1e-106 390.6 293 64.2
A06p21000 Brassica napus HOM05D006681 ORTHO05D008338 1.5e-106 390.2 293 64.2
PSO339G5789 Papaver somniferum HOM05D006681 ORTHO05D008338 9.5e-106 387.5 300 64.3
C03p70520 Brassica napus HOM05D006681 ORTHO05D008338 1.2e-105 387.1 293 62.8
BolC3t19336H Brassica oleracea HOM05D006681 ORTHO05D008338 1.2e-105 387.1 293 62.8
BcaC01g01926 Brassica carinata HOM05D006681 ORTHO05D008338 1.6e-105 386.7 293 62.5
Lj3g0011020 Lotus japonicus HOM05D006681 ORTHO05D008338 1.1e-104 384.0 229 80.8
AUR62001852 Chenopodium quinoa HOM05D006681 ORTHO05D008338 2.3e-104 382.9 288 65.6
MSTRG.18607 Avicennia marina HOM05D006681 ORTHO05D008338 6.8e-104 381.3 291 63.9
HPP92_006593 Vanilla planifolia HOM05D006681 ORTHO05D008338 1.5e-103 380.2 287 62.7
PSO384G0101 Papaver somniferum HOM05D006681 ORTHO05D008338 2.0e-103 379.8 300 63.3
Os05g0117500 Oryza sativa ssp. japonica HOM05D006681 ORTHO05D008338 3.4e-103 379.0 299 61.9
SGA_v2.0_scaffold134G34764 Striga asiatica HOM05D006681 ORTHO05D008338 7.5e-103 377.9 256 70.3
FAN25G3219 Fragaria x ananassa HOM05D006681 ORTHO05D008338 2.2e-102 376.3 283 66.4
Zm00001eb266060 Zea mays HOM05D006681 ORTHO05D008338 3.7e-102 375.6 286 63.3
Aa31LG4G15300 Aethionema arabicum HOM05D006681 ORTHO05D008338 5.4e-101 371.7 363 53.4
Lj1A175T11 Lonicera japonica HOM05D006681 ORTHO05D008338 6.6e-99 364.8 293 64.2
Thhalv10002633m.g Eutrema salsugineum HOM05D006681 ORTHO05D008338 9.9e-95 350.9 289 60.9
Nitab4.5_0002684g0190 Nicotiana tabacum HOM05D006681 ORTHO05D008338 9.6e-90 334.3 278 61.9
vmacro03125 Vaccinium macrocarpon HOM05D006681 ORTHO05D008338 3.6e-89 332.4 309 58.9
Duzib168G1095 Durio zibethinus HOM05D006681 ORTHO05D008338 1.4e-88 330.5 287 58.5
SMO367G0798 Selaginella moellendorffii HOM05D006681 ORTHO05D008338 3.1e-88 329.3 274 57.3
Ah.08g214980 Amaranthus hybridus HOM05D006681 ORTHO05D008338 6.9e-88 328.2 293 57.3
Dinv32860 Davidia involucrata HOM05D006681 ORTHO05D008338 9.0e-88 327.8 222 73.0
Nitab4.5_0001953g0020 Nicotiana tabacum HOM05D006681 ORTHO05D008338 9.0e-88 327.8 281 60.5
AUR62009646 Chenopodium quinoa HOM05D006681 ORTHO05D008338 2.6e-87 326.2 287 56.4
Pp3c11_23040 Physcomitrium patens HOM05D006681 ORTHO05D008338 3.0e-83 312.8 282 55.3
Haze_24007 Corylus avellana HOM05D006681 ORTHO05D008338 3.9e-83 312.4 458 42.6
Mapoly0128s0008 Marchantia polymorpha HOM05D006681 ORTHO05D008338 1.9e-82 310.1 300 53.3
AagrBONN_evm.TU.Sc2ySwM_228.1772 Anthoceros agrestis HOM05D006681 ORTHO05D008338 2.1e-81 306.6 279 55.6
Cpa.g.sc2126.1 Carica papaya HOM05D006681 ORTHO05D008338 2.1e-81 306.6 207 70.5
MELO3C013668.2 Cucumis melo HOM05D006681 ORTHO05D008338 2.9e-78 296.2 255 58.4
Nitab4.5_0001953g0050 Nicotiana tabacum HOM05D006681 ORTHO05D008338 4.9e-70 268.9 284 51.1
Sc06g0008190 Simmondsia chinensis HOM05D006681 ORTHO05D008338 5.7e-66 255.4 178 68.5
AL1G56400 Arabidopsis lyrata HOM05D006681 ORTHO05D008338 7.4e-66 255.0 188 66.5
Hund05017 Selenicereus undatus HOM05D006681 ORTHO05D008338 1.3e-65 254.2 284 48.2
CBR_g415 Chara braunii HOM05D006681 ORTHO05D008338 1.0e-62 244.6 347 39.2
ATR0759G055 Amborella trichopoda HOM05D006681 ORTHO05D008338 6.5e-54 215.3 162 63.0
SEGI_27570 Sequoiadendron giganteum HOM05D006681 ORTHO05D008338 1.4e-53 214.2 198 54.5
Pp3c11_23047 Physcomitrium patens HOM05D006681 ORTHO05D008338 9.7e-50 201.4 173 58.4
Glyma.11G145018 Glycine max HOM05D006681 ORTHO05D008338 3.5e-39 166.4 115 71.3
Nitab4.5_0000766g0030 Nicotiana tabacum HOM05D006681 ORTHO05D008338 7.4e-34 148.7 143 56.6
Sc06g0008200 Simmondsia chinensis HOM05D006681 ORTHO05D008338 1.4e-32 144.4 110 61.8
CAN.G1289.2 Capsicum annuum HOM05D006681 ORTHO05D008338 7.7e-31 138.7 207 41.5
PRCOL_00001211 Prasinoderma coloniale HOM05D006681 ORTHO05D008338 2.7e-28 130.2 434 24.4
MCO11G760 Micromonas commoda HOM05D006681 ORTHO05D008338 6.1e-28 129.0 257 31.1
MD03G1102800 Malus domestica HOM05D006681 ORTHO05D008338 3.2e-21 106.7 76 68.4
CDE08G1356 Ceratophyllum demersum HOM05D006681 ORTHO05D008338 2.0e-18 97.4 71 59.2
Actinidia20468 Actinidia chinensis HOM05D006681 ORTHO05D008338 7.2e-13 79.0 64 59.4
Nitab4.5_0001068g0110 Nicotiana tabacum HOM05D006681 ORTHO05D008338 4.7e-12 76.3 54 68.5


User provided reference genes

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