Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.FVV1VG Arachis hypogaea HOM05D005077 ORTHO05D006889 0.0e+00 1491.5 748 100.0
arahy.Tifrunner.gnm1.ann1.BW8NI8 Arachis hypogaea HOM05D005077 ORTHO05D006889 0.0e+00 1264.6 739 88.1
arahy.Tifrunner.gnm1.ann1.2V8KIQ Arachis hypogaea HOM05D005077 ORTHO05D006889 0.0e+00 1231.9 752 85.4
arahy.Tifrunner.gnm1.ann1.CACA61 Arachis hypogaea HOM05D005077 ORTHO05D006889 0.0e+00 1196.4 734 83.9
arahy.Tifrunner.gnm1.ann1.2UET99 Arachis hypogaea HOM05D005077 ORTHO05D006889 0.0e+00 1130.2 748 80.1
Lj1g0022218 Lotus japonicus HOM05D005077 ORTHO05D006889 1.7e-289 999.2 757 68.8
Glyma.19G115700 Glycine max HOM05D005077 ORTHO05D006889 2.9e-289 998.4 760 68.4
VMungo1383G1518 Vigna mungo HOM05D005077 ORTHO05D006889 4.9e-289 997.7 758 68.1
Ca_08303_v3 Cicer arietinum L. HOM05D005077 ORTHO05D006889 3.5e-287 991.5 792 65.8
Phvul.001G114900 Phaseolus vulgaris HOM05D005077 ORTHO05D006889 1.9e-285 985.7 761 67.9
Psat3g087440 Pisum sativum HOM05D005077 ORTHO05D006889 9.6e-285 983.4 760 67.8
Medtr7g111650 Medicago truncatula HOM05D005077 ORTHO05D006889 8.7e-278 960.3 758 66.6
TPR.G4698 Trifolium pratense HOM05D005077 ORTHO05D006889 9.6e-277 956.8 760 66.8
Lalb_Chr22g0358841 Lupinus albus HOM05D005077 ORTHO05D006889 1.8e-259 899.4 675 68.1
Cfa006359 Carpinus fangiana HOM05D005077 ORTHO05D006889 1.0e-241 840.5 764 59.0
Prupe.6G350500 Prunus persica HOM05D005077 ORTHO05D006889 7.5e-237 824.3 763 57.7
Manes.08G139800 Manihot esculenta HOM05D005077 ORTHO05D006889 3.7e-236 822.0 760 57.9
GSVIVG01023486001 Vitis vinifera HOM05D005077 ORTHO05D006889 4.1e-235 818.5 760 56.2
CiPaw.07G073200 Carya illinoinensis HOM05D005077 ORTHO05D006889 4.5e-234 815.1 764 56.8
RcHm_v2.0_Chr3g0449521 Rosa chinensis HOM05D005077 ORTHO05D006889 4.2e-232 808.5 750 56.5
Duzib177G0384 Durio zibethinus HOM05D005077 ORTHO05D006889 9.4e-232 807.4 763 56.2
Potri.013G047400 Populus trichocarpa HOM05D005077 ORTHO05D006889 2.1e-231 806.2 763 57.7
Potri.019G019600 Populus trichocarpa HOM05D005077 ORTHO05D006889 6.1e-231 804.7 761 57.0
Thecc.05G270400 Theobroma cacao HOM05D005077 ORTHO05D006889 2.3e-230 802.7 765 56.3
MD04G1230700 Malus domestica HOM05D005077 ORTHO05D006889 3.0e-230 802.4 762 56.6
CANSAT54G1999 Cannabis sativa HOM05D005077 ORTHO05D006889 7.5e-229 797.7 761 55.8
FvH4_6g01810 Fragaria vesca HOM05D005077 ORTHO05D006889 1.1e-227 793.9 764 55.4
Gorai.007G275500 Gossypium raimondii HOM05D005077 ORTHO05D006889 1.2e-226 790.4 763 55.7
Gohir.D11G257100 Gossypium hirsutum HOM05D005077 ORTHO05D006889 1.6e-226 790.0 763 55.6
Actinidia39994 Actinidia chinensis HOM05D005077 ORTHO05D006889 1.0e-222 777.3 765 54.2
TAR362G0145 Trochodendron aralioides HOM05D005077 ORTHO05D006889 1.4e-222 776.9 761 54.3
TWI36G1092 Tripterygium wilfordii HOM05D005077 ORTHO05D006889 5.7e-221 771.5 764 56.3
COL.COLO4_15493 Corchorus olitorius HOM05D005077 ORTHO05D006889 2.5e-216 756.1 780 53.1
FAN09G0372 Fragaria x ananassa HOM05D005077 ORTHO05D006889 2.5e-216 756.1 799 52.4
PGR142G0621 Punica granatum HOM05D005077 ORTHO05D006889 2.1e-215 753.1 761 54.8
FAN14G3018 Fragaria x ananassa HOM05D005077 ORTHO05D006889 2.3e-214 749.6 801 52.1
Sed0014730 Sechium edule HOM05D005077 ORTHO05D006889 2.3e-214 749.6 768 53.4
Cpa.g.sc306.8 Carica papaya HOM05D005077 ORTHO05D006889 1.2e-213 747.3 681 58.1
ClCG11G010550 Citrullus lanatus HOM05D005077 ORTHO05D006889 2.6e-213 746.1 748 53.5
Rhsim05G0172000 Rhododendron simsii HOM05D005077 ORTHO05D006889 3.4e-213 745.7 789 52.5
FAN14G2113 Fragaria x ananassa HOM05D005077 ORTHO05D006889 5.7e-213 745.0 802 51.9
Oeu006006.2 Olea europaea HOM05D005077 ORTHO05D006889 9.8e-213 744.2 763 52.2
Aqoxy5G00195 Aquilegia oxysepala HOM05D005077 ORTHO05D006889 1.7e-212 743.4 767 52.9
QL07p018541 Quercus lobata HOM05D005077 ORTHO05D006889 1.7e-212 743.4 670 58.2
HanXRQChr14g0454211 Helianthus annuus HOM05D005077 ORTHO05D006889 2.2e-212 743.0 766 53.7
Aa31LG5G14920 Aethionema arabicum HOM05D005077 ORTHO05D006889 2.9e-212 742.7 779 52.8
MELO3C008703.2 Cucumis melo HOM05D005077 ORTHO05D006889 3.7e-212 742.3 764 53.1
Thhalv10020155m.g Eutrema salsugineum HOM05D005077 ORTHO05D006889 3.7e-212 742.3 763 53.3
THA.LOC104827285 Tarenaya hassleriana HOM05D005077 ORTHO05D006889 3.7e-212 742.3 763 53.6
AL3G14430 Arabidopsis lyrata HOM05D005077 ORTHO05D006889 6.4e-212 741.5 761 53.4
BraA03t12537Z Brassica rapa HOM05D005077 ORTHO05D006889 1.2e-210 737.3 762 53.7
CARHR078630 Cardamine hirsuta HOM05D005077 ORTHO05D006889 1.6e-210 736.9 763 53.5
Sabra19G0032000 Salix brachista HOM05D005077 ORTHO05D006889 2.3e-209 733.0 846 50.8
AT3G04480 Arabidopsis thaliana HOM05D005077 ORTHO05D006889 5.0e-209 731.9 762 52.6
Eucgr.B02151 Eucalyptus grandis HOM05D005077 ORTHO05D006889 8.6e-209 731.1 762 52.8
BcaB04g19332 Brassica carinata HOM05D005077 ORTHO05D006889 3.3e-208 729.2 763 52.8
BolC5t34930H Brassica oleracea HOM05D005077 ORTHO05D006889 3.3e-208 729.2 762 53.1
BraA05t23044Z Brassica rapa HOM05D005077 ORTHO05D006889 3.3e-208 729.2 766 52.6
A05p43000 Brassica napus HOM05D005077 ORTHO05D006889 5.6e-208 728.4 762 52.2
C05p62770 Brassica napus HOM05D005077 ORTHO05D006889 7.3e-208 728.0 762 53.1
BcaC05g30222 Brassica carinata HOM05D005077 ORTHO05D006889 1.2e-207 727.2 763 52.6
Lj2A44T74 Lonicera japonica HOM05D005077 ORTHO05D006889 3.6e-207 725.7 819 49.9
Sc20g0000660 Simmondsia chinensis HOM05D005077 ORTHO05D006889 6.2e-207 724.9 768 52.9
PSO832G3809 Papaver somniferum HOM05D005077 ORTHO05D006889 1.0e-206 724.2 767 52.7
Carub.0003s0364 Capsella rubella HOM05D005077 ORTHO05D006889 1.4e-206 723.8 762 52.2
A03p33620 Brassica napus HOM05D005077 ORTHO05D006889 3.1e-206 722.6 763 52.2
Solyc04g010080.3 Solanum lycopersicum HOM05D005077 ORTHO05D006889 6.8e-206 721.5 765 53.9
PSO210G4243 Papaver somniferum HOM05D005077 ORTHO05D006889 2.6e-205 719.5 766 52.2
BolC3t16351H Brassica oleracea HOM05D005077 ORTHO05D006889 3.4e-205 719.2 768 51.7
Lsat_1_v5_gn_2_108321 Lactuca sativa HOM05D005077 ORTHO05D006889 5.8e-205 718.4 750 53.9
Sopen04g005220 Solanum pennellii HOM05D005077 ORTHO05D006889 5.8e-205 718.4 765 53.5
SalBow3G3009 Salvia bowleyana HOM05D005077 ORTHO05D006889 9.8e-205 717.6 764 51.2
ECA238G3062 Erigeron canadensis HOM05D005077 ORTHO05D006889 1.7e-204 716.8 756 52.5
Ciclev10019185m.g Citrus clementina HOM05D005077 ORTHO05D006889 2.9e-204 716.1 678 56.5
vmacro19987 Vaccinium macrocarpon HOM05D005077 ORTHO05D006889 1.2e-202 710.7 835 47.9
MBI10_g13801_MAGBIO Magnolia biondii HOM05D005077 ORTHO05D006889 3.5e-202 709.1 745 53.2
PGSC0003DMG400011494 Solanum tuberosum HOM05D005077 ORTHO05D006889 3.5e-202 709.1 790 52.3
BcaC01g04375 Brassica carinata HOM05D005077 ORTHO05D006889 4.6e-202 708.8 764 51.7
C03p40820 Brassica napus HOM05D005077 ORTHO05D006889 4.6e-202 708.8 764 51.7
CSS0033596 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D006889 4.6e-202 708.8 695 55.0
Migut.F00798 Erythranthe guttata HOM05D005077 ORTHO05D006889 1.3e-201 707.2 767 50.7
EL10Ac9g21459 Beta vulgaris HOM05D005077 ORTHO05D006889 3.0e-201 706.1 765 50.2
Atru.chr2.993 Acer truncatum HOM05D005077 ORTHO05D006889 1.1e-200 704.1 623 60.0
MSTRG.27374 Avicennia marina HOM05D005077 ORTHO05D006889 1.6e-199 700.3 763 50.3
BcaC05g29939 Brassica carinata HOM05D005077 ORTHO05D006889 8.1e-199 698.0 765 51.9
Gohir.A11G246900 Gossypium hirsutum HOM05D005077 ORTHO05D006889 8.3e-196 688.0 679 53.8
Nitab4.5_0006737g0070 Nicotiana tabacum HOM05D005077 ORTHO05D006889 4.1e-195 685.6 787 49.6
Hund06905 Selenicereus undatus HOM05D005077 ORTHO05D006889 5.4e-195 685.3 768 50.3
Nn1g02888 Nelumbo nucifera HOM05D005077 ORTHO05D006889 6.0e-194 681.8 696 53.4
Sabra13G0043400 Salix brachista HOM05D005077 ORTHO05D006889 3.9e-193 679.1 734 51.6
DCAR_003547 Daucus carota HOM05D005077 ORTHO05D006889 1.2e-189 667.5 761 49.5
ATR0736G030 Amborella trichopoda HOM05D005077 ORTHO05D006889 7.6e-189 664.8 762 48.3
AUR62013106 Chenopodium quinoa HOM05D005077 ORTHO05D006889 2.2e-188 663.3 787 48.5
CsaV3_2G009810 Cucumis sativus L. HOM05D005077 ORTHO05D006889 3.1e-182 642.9 673 51.7
Cc02_g08770 Coffea canephora HOM05D005077 ORTHO05D006889 1.2e-181 641.0 677 51.6
Os02g0810450 Oryza sativa ssp. japonica HOM05D005077 ORTHO05D006889 3.8e-180 636.0 771 48.5
BcaC05g30195 Brassica carinata HOM05D005077 ORTHO05D006889 4.9e-180 635.6 758 48.8
HPP92_014753 Vanilla planifolia HOM05D005077 ORTHO05D006889 1.6e-178 630.6 768 48.6
Peaxi162Scf00528g00225 Petunia axillaris HOM05D005077 ORTHO05D006889 7.8e-178 628.2 749 47.8
SGA_v2.0_scaffold1G00651 Striga asiatica HOM05D005077 ORTHO05D006889 1.1e-174 617.8 821 44.8
Dinv35947 Davidia involucrata HOM05D005077 ORTHO05D006889 5.1e-169 599.0 586 56.8
CDE07G0212 Ceratophyllum demersum HOM05D005077 ORTHO05D006889 1.9e-168 597.0 757 45.4
Haze_04419 Corylus avellana HOM05D005077 ORTHO05D006889 1.4e-158 564.3 961 38.8
Nitab4.5_0003780g0090 Nicotiana tabacum HOM05D005077 ORTHO05D006889 1.8e-158 563.9 755 44.9
CAN.G786.40 Capsicum annuum HOM05D005077 ORTHO05D006889 7.6e-149 531.9 639 47.7
unitig_748.g6990 Utricularia gibba HOM05D005077 ORTHO05D006889 1.3e-145 521.2 754 41.6
Hma1.2p1_0114F.1_g055300 Hydrangea macrophylla HOM05D005077 ORTHO05D006889 2.2e-140 503.8 637 46.3
Sp3g03330 Schrenkiella parvula HOM05D005077 ORTHO05D006889 1.2e-138 498.0 575 48.5
Zm00001eb258450 Zea mays HOM05D005077 ORTHO05D006889 5.3e-134 482.6 657 45.1
AagrBONN_evm.TU.Sc2ySwM_362.1555 Anthoceros agrestis HOM05D005077 ORTHO05D006889 2.9e-132 476.9 793 39.8
Pp3c11_830 Physcomitrium patens HOM05D005077 ORTHO05D006889 2.8e-127 460.3 588 45.6
Eucgr.B02424 Eucalyptus grandis HOM05D005077 ORTHO05D006889 1.6e-125 454.5 536 46.8
Mapoly0027s0145 Marchantia polymorpha HOM05D005077 ORTHO05D006889 8.5e-124 448.7 594 45.8
Oeu041238.1 Olea europaea HOM05D005077 ORTHO05D006889 1.9e-123 447.6 669 42.6
SMO348G0068 Selaginella moellendorffii HOM05D005077 ORTHO05D006889 5.2e-121 439.5 567 45.5
CBR_g3613 Chara braunii HOM05D005077 ORTHO05D006889 2.2e-116 424.1 635 42.7
AUR62010111 Chenopodium quinoa HOM05D005077 ORTHO05D006889 2.7e-93 347.4 394 47.7
SEGI_09343 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 5.6e-91 339.7 401 48.9
PGSC0003DMG400019115 Solanum tuberosum HOM05D005077 ORTHO05D006889 2.4e-73 281.2 370 45.4
MCO10G045 Micromonas commoda HOM05D005077 ORTHO05D006889 2.6e-64 251.1 646 31.7
PRCOL_00005667 Prasinoderma coloniale HOM05D005077 ORTHO05D006889 9.0e-57 226.1 523 32.5
SEGI_01626 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 7.6e-56 223.0 381 36.7
Cre01.g033091 Chlamydomonas reinhardtii HOM05D005077 ORTHO05D006889 9.3e-54 216.1 689 27.6
SHI22754 Sapria himalayana HOM05D005077 ORTHO05D006889 1.8e-44 185.3 158 64.6
FAN05G0362 Fragaria x ananassa HOM05D005077 ORTHO05D006889 3.3e-43 181.0 173 52.6
FAN05G3606 Fragaria x ananassa HOM05D005077 ORTHO05D019498 2.0e-40 171.8 189 46.6
Cfa026934 Carpinus fangiana HOM05D005077 ORTHO05D006889 1.3e-39 169.1 537 28.7
SEGI_03702 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 4.3e-35 154.1 228 41.7
SEGI_18706 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 4.3e-35 154.1 228 41.7
Duzib106G1915 Durio zibethinus HOM05D005077 ORTHO05D006889 1.9e-22 112.1 159 39.6
BcaC01g04372 Brassica carinata HOM05D003677 ORTHO05D004231 1.2e-21 109.4 108 54.6
Lalb_Chr22g0358851 Lupinus albus HOM05D005077 ORTHO05D006889 3.0e-20 104.8 74 71.6
QL07p018546 Quercus lobata HOM05D005077 ORTHO05D006889 3.0e-20 104.8 74 71.6
Cc02_g08780 Coffea canephora HOM05D005077 ORTHO05D006889 5.7e-19 100.5 74 68.9
arahy.Tifrunner.gnm1.ann1.TVQ2CS Arachis hypogaea HOM05D005077 ORTHO05D006889 1.3e-15 89.4 175 36.6
PGSC0003DMG400019116 Solanum tuberosum HOM05D005077 ORTHO05D018175 3.8e-15 87.8 106 42.5
C08p13010 Brassica napus HOM05D005077 ORTHO05D006889 2.7e-13 81.6 63 68.3
Peaxi162Scf00528g00025 Petunia axillaris HOM05D000011 ORTHO05D015719 2.3e-12 78.6 64 56.2
CSS0009313 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 7.4e-11 73.6 79 51.9
Atru.chr2.994 Acer truncatum HOM05D005077 ORTHO05D018175 1.6e-08 65.9 73 57.5
BcaC05g29940 Brassica carinata HOM05D005077 ORTHO05D018175 7.7e-08 63.5 187 31.6
Medtr7g086410 Medicago truncatula HOM05D005077 ORTHO05D260314 3.8e-07 61.2 50 64.0
EL10Ac5g11645 Beta vulgaris HOM05D005077 ORTHO05D006889 1.5e-06 59.3 57 52.6
CSS0021399 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 7.2e-06 57.0 66 45.5


User provided reference genes

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