Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.FV4QAS Arachis hypogaea HOM05D003958 ORTHO05D004864 1.6e-94 349.4 173 100.0
arahy.Tifrunner.gnm1.ann1.38SPRB Arachis hypogaea HOM05D003958 ORTHO05D004864 1.4e-74 283.1 171 87.1
arahy.Tifrunner.gnm1.ann1.CB8F3G Arachis hypogaea HOM05D003958 ORTHO05D004864 1.4e-74 283.1 171 87.1
Phvul.011G172200 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 5.6e-71 271.2 171 81.9
Lj2g0025561 Lotus japonicus HOM05D003958 ORTHO05D004864 7.3e-71 270.8 171 81.3
Lj3g0001252 Lotus japonicus HOM05D003958 ORTHO05D004864 3.1e-69 265.4 171 80.7
Psat1g092800 Pisum sativum HOM05D003958 ORTHO05D004864 4.0e-69 265.0 171 80.1
Duzib147G0897 Durio zibethinus HOM05D003958 ORTHO05D004864 6.9e-69 264.2 171 79.5
Nn7g37719 Nelumbo nucifera HOM05D003958 ORTHO05D004864 6.9e-69 264.2 171 80.7
arahy.Tifrunner.gnm1.ann1.M5ZQAR Arachis hypogaea HOM05D003958 ORTHO05D004864 9.0e-69 263.8 168 83.9
Lj7A595G65 Lonicera japonica HOM05D003958 ORTHO05D004864 9.0e-69 263.8 170 80.6
Lalb_Chr03g0031671 Lupinus albus HOM05D003958 ORTHO05D004864 9.0e-69 263.8 171 79.5
TPR.G33516 Trifolium pratense HOM05D003958 ORTHO05D004864 9.0e-69 263.8 171 79.5
Cc02_g12190 Coffea canephora HOM05D003958 ORTHO05D004864 1.2e-68 263.5 171 77.8
Duzib147G0566 Durio zibethinus HOM05D003958 ORTHO05D004864 1.5e-68 263.1 171 79.5
Ca_00876_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 2.0e-68 262.7 171 80.1
TPR.G11724 Trifolium pratense HOM05D003958 ORTHO05D004864 2.6e-68 262.3 171 80.1
Ca_00369_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 5.8e-68 261.2 171 80.7
Manes.17G113700 Manihot esculenta HOM05D003958 ORTHO05D004864 5.8e-68 261.2 171 78.9
CSS0020788 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 9.9e-68 260.4 171 79.5
CSS0020854 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 9.9e-68 260.4 171 79.5
Gohir.D09G027100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 9.9e-68 260.4 171 78.4
Gorai.006G031600 Gossypium raimondii HOM05D003958 ORTHO05D004864 9.9e-68 260.4 171 78.4
Duzib147G0735 Durio zibethinus HOM05D003958 ORTHO05D004864 1.3e-67 260.0 171 78.4
Gohir.D13G007800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.3e-67 260.0 171 78.9
Gohir.A09G027800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.2e-67 259.2 171 78.4
QL02p075632 Quercus lobata HOM05D003958 ORTHO05D004864 2.2e-67 259.2 171 77.8
Thecc.04G013700 Theobroma cacao HOM05D003958 ORTHO05D004864 2.2e-67 259.2 171 78.4
Oeu057051.1 Olea europaea HOM05D003958 ORTHO05D004864 2.9e-67 258.8 171 76.6
TAR622G1043 Trochodendron aralioides HOM05D003958 ORTHO05D004864 3.8e-67 258.5 170 79.4
ClCG01G008920 Citrullus lanatus HOM05D003958 ORTHO05D004864 4.9e-67 258.1 173 77.5
Ciclev10016011m.g Citrus clementina HOM05D003958 ORTHO05D004864 6.4e-67 257.7 171 77.8
Haze_14701 Corylus avellana HOM05D003958 ORTHO05D004864 6.4e-67 257.7 171 76.6
Cfa007405 Carpinus fangiana HOM05D003958 ORTHO05D004864 8.4e-67 257.3 171 76.0
Peaxi162Scf00129g01325 Petunia axillaris HOM05D003958 ORTHO05D004864 8.4e-67 257.3 173 77.5
Aqoxy2G00425 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 1.1e-66 256.9 171 77.2
CAN.G206.10 Capsicum annuum HOM05D003958 ORTHO05D004864 1.1e-66 256.9 171 77.8
MELO3C021808.2 Cucumis melo HOM05D003958 ORTHO05D004864 1.4e-66 256.5 173 76.9
DCAR_009028 Daucus carota HOM05D003958 ORTHO05D004864 1.4e-66 256.5 171 77.2
Medtr6g047800 Medicago truncatula HOM05D003958 ORTHO05D004864 1.4e-66 256.5 171 77.2
COL.COLO4_29053 Corchorus olitorius HOM05D003958 ORTHO05D004864 1.9e-66 256.1 171 77.2
Sed0009763 Sechium edule HOM05D003958 ORTHO05D004864 1.9e-66 256.1 173 76.3
PGSC0003DMG400000483 Solanum tuberosum HOM05D003958 ORTHO05D004864 1.9e-66 256.1 171 77.8
CANSAT64G0951 Cannabis sativa HOM05D003958 ORTHO05D004864 2.4e-66 255.8 171 76.0
CsaV3_1G037790 Cucumis sativus L. HOM05D003958 ORTHO05D004864 2.4e-66 255.8 173 76.9
PGR054G0003 Punica granatum HOM05D003958 ORTHO05D004864 2.4e-66 255.8 171 76.6
PGR119G1149 Punica granatum HOM05D003958 ORTHO05D004864 2.4e-66 255.8 171 76.6
Lju41A38T12 Lonicera japonica HOM05D003958 ORTHO05D004864 3.2e-66 255.4 172 76.7
MSTRG.3157 Avicennia marina HOM05D003958 ORTHO05D004864 4.2e-66 255.0 171 76.6
Hund02774 Selenicereus undatus HOM05D003958 ORTHO05D004864 4.2e-66 255.0 173 76.9
Aqoxy3G00906 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 5.4e-66 254.6 171 75.4
Nitab4.5_0002739g0040 Nicotiana tabacum HOM05D003958 ORTHO05D004864 5.4e-66 254.6 171 77.2
Nitab4.5_0008215g0010 Nicotiana tabacum HOM05D003958 ORTHO05D004864 5.4e-66 254.6 171 77.2
Psat1g202680 Pisum sativum HOM05D003958 ORTHO05D004864 5.4e-66 254.6 171 78.4
CiPaw.04G026700 Carya illinoinensis HOM05D003958 ORTHO05D004864 7.1e-66 254.2 170 76.5
THA.LOC104802398 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 7.1e-66 254.2 171 75.4
Migut.H00096 Erythranthe guttata HOM05D003958 ORTHO05D004864 9.3e-66 253.8 171 76.0
Glyma.13G234900 Glycine max HOM05D003958 ORTHO05D004864 9.3e-66 253.8 171 76.0
Atru.chr6.2341 Acer truncatum HOM05D003958 ORTHO05D004864 1.6e-65 253.1 171 76.6
Sopen02g031390 Solanum pennellii HOM05D003958 ORTHO05D004864 1.6e-65 253.1 171 76.0
Glyma.15G078000 Glycine max HOM05D003958 ORTHO05D004864 2.1e-65 252.7 171 75.4
MD17G1031500 Malus domestica HOM05D003958 ORTHO05D004864 2.1e-65 252.7 171 77.2
TWI12G0059 Tripterygium wilfordii HOM05D003958 ORTHO05D004864 2.1e-65 252.7 172 76.7
EL10Ac9g21169 Beta vulgaris HOM05D003958 ORTHO05D004864 3.5e-65 251.9 173 75.1
MBI05_g22036_MAGBIO Magnolia biondii HOM05D003958 ORTHO05D004864 3.5e-65 251.9 171 77.2
Eucgr.I01766 Eucalyptus grandis HOM05D003958 ORTHO05D004864 4.6e-65 251.5 171 76.0
Phvul.006G181700 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 4.6e-65 251.5 171 76.0
THA.LOC104821089 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 1.0e-64 250.4 170 74.1
VMungo0540G0822 Vigna mungo HOM05D003958 ORTHO05D004864 1.0e-64 250.4 171 74.9
CiPaw.03G040700 Carya illinoinensis HOM05D003958 ORTHO05D004864 1.3e-64 250.0 171 74.9
AUR62023705 Chenopodium quinoa HOM05D003958 ORTHO05D004864 1.8e-64 249.6 173 75.1
Sabra18G0099100 Salix brachista HOM05D003958 ORTHO05D004864 2.3e-64 249.2 171 75.4
Sabra18G0098500 Salix brachista HOM05D003958 ORTHO05D004864 3.0e-64 248.8 171 74.9
Sabra18G0098900 Salix brachista HOM05D003958 ORTHO05D004864 3.0e-64 248.8 171 74.9
Sabra18G0101000 Salix brachista HOM05D003958 ORTHO05D004864 3.0e-64 248.8 171 74.9
AL6G25360 Arabidopsis lyrata HOM05D003958 ORTHO05D004864 3.9e-64 248.4 171 74.3
AT5G14600 Arabidopsis thaliana HOM05D003958 ORTHO05D004864 3.9e-64 248.4 171 74.3
Carub.0006s1277 Capsella rubella HOM05D003958 ORTHO05D004864 3.9e-64 248.4 171 74.3
Medtr2g014590 Medicago truncatula HOM05D003958 ORTHO05D004864 3.9e-64 248.4 171 76.6
Sabra18G0100500 Salix brachista HOM05D003958 ORTHO05D004864 3.9e-64 248.4 171 74.9
MD09G1029500 Malus domestica HOM05D003958 ORTHO05D004864 5.1e-64 248.1 171 76.0
FAN14G0618 Fragaria x ananassa HOM05D003958 ORTHO05D004864 8.7e-64 247.3 173 74.0
CARHR198720 Cardamine hirsuta HOM05D003958 ORTHO05D004864 1.1e-63 246.9 171 73.7
Sc03g0007660 Simmondsia chinensis HOM05D003958 ORTHO05D004864 1.1e-63 246.9 172 73.8
Prupe.3G287900 Prunus persica HOM05D003958 ORTHO05D004864 1.5e-63 246.5 171 74.9
Aa31LG11G15350 Aethionema arabicum HOM05D003958 ORTHO05D004864 1.9e-63 246.1 171 73.1
PSO832G3613 Papaver somniferum HOM05D003958 ORTHO05D004864 1.9e-63 246.1 170 75.3
PSO063G1059 Papaver somniferum HOM05D003958 ORTHO05D004864 2.5e-63 245.7 170 75.3
vmacro18265 Vaccinium macrocarpon HOM05D003958 ORTHO05D004864 2.5e-63 245.7 188 71.3
Thhalv10014133m.g Eutrema salsugineum HOM05D003958 ORTHO05D004864 4.3e-63 245.0 171 71.9
FvH4_6g51011 Fragaria vesca HOM05D003958 ORTHO05D004864 4.3e-63 245.0 173 73.4
FAN09G1134 Fragaria x ananassa HOM05D003958 ORTHO05D004864 5.6e-63 244.6 171 73.7
RcHm_v2.0_Chr2g0172551 Rosa chinensis HOM05D003958 ORTHO05D004864 5.6e-63 244.6 173 73.4
Potri.018G120500 Populus trichocarpa HOM05D003958 ORTHO05D004864 9.6e-63 243.8 171 74.3
Sp6g29430 Schrenkiella parvula HOM05D003958 ORTHO05D004864 9.6e-63 243.8 171 72.5
HanXRQChr09g0255001 Helianthus annuus HOM05D003958 ORTHO05D004864 1.3e-62 243.4 173 73.4
Lsat_1_v5_gn_4_183181 Lactuca sativa HOM05D003958 ORTHO05D004864 1.3e-62 243.4 170 74.1
HPP92_013732 Vanilla planifolia HOM05D003958 ORTHO05D004864 1.3e-62 243.4 174 70.7
C09p62510 Brassica napus HOM05D003958 ORTHO05D004864 3.7e-62 241.9 171 71.9
ECA232G3491 Erigeron canadensis HOM05D003958 ORTHO05D004864 3.7e-62 241.9 170 72.9
BcaNung03113 Brassica carinata HOM05D003958 ORTHO05D004864 6.2e-62 241.1 171 71.9
ATR0057G029 Amborella trichopoda HOM05D003958 ORTHO05D004864 8.1e-62 240.7 171 72.5
Cpa.g.sc108.31 Carica papaya HOM05D003958 ORTHO05D004864 1.4e-61 240.0 171 74.3
A10p24040 Brassica napus HOM05D003958 ORTHO05D004864 1.8e-61 239.6 171 71.3
BolC9t59091H Brassica oleracea HOM05D003958 ORTHO05D004864 1.8e-61 239.6 171 71.3
BraA10t44467Z Brassica rapa HOM05D003958 ORTHO05D004864 1.8e-61 239.6 171 71.3
CDE06G0036 Ceratophyllum demersum HOM05D003958 ORTHO05D004864 6.9e-61 237.7 171 72.5
BcaC03g13470 Brassica carinata HOM05D003958 ORTHO05D004864 1.2e-60 236.9 171 71.3
AUR62002487 Chenopodium quinoa HOM05D003958 ORTHO05D004864 3.4e-60 235.3 193 66.3
SEGI_01237 Sequoiadendron giganteum HOM05D003958 ORTHO05D004864 5.8e-60 234.6 170 71.2
SGA_v2.0_scaffold196G40937 Striga asiatica HOM05D003958 ORTHO05D004864 1.3e-59 233.4 171 72.5
Zm00001eb071120 Zea mays HOM05D003958 ORTHO05D004864 3.8e-59 231.9 184 67.4
arahy.Tifrunner.gnm1.ann1.8Z0BSJ Arachis hypogaea HOM05D003958 ORTHO05D004864 2.1e-57 226.1 166 74.7
arahy.Tifrunner.gnm1.ann1.Z5MU8N Arachis hypogaea HOM05D003958 ORTHO05D004864 3.5e-57 225.3 148 83.1
Os04g0319600 Oryza sativa ssp. japonica HOM05D003958 ORTHO05D004864 2.3e-56 222.6 185 64.9
Hma1.2p1_0858F.1_g229230 Hydrangea macrophylla HOM05D003958 ORTHO05D004864 9.6e-55 217.2 196 62.2
CSS0027303 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 1.6e-54 216.5 171 69.0
Mapoly0053s0094 Marchantia polymorpha HOM05D003958 ORTHO05D004864 8.2e-54 214.2 170 65.9
Pp3c18_5220 Physcomitrium patens HOM05D003958 ORTHO05D004864 2.9e-51 205.7 171 63.2
Gorai.013G008200 Gossypium raimondii HOM05D003958 ORTHO05D004864 8.4e-51 204.1 166 66.3
GSVIVG01032441001 Vitis vinifera HOM05D000462 ORTHO05D002607 3.5e-49 198.7 125 79.2
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 1.3e-48 196.8 170 60.6
AagrBONN_evm.TU.Sc2ySwM_344.690 Anthoceros agrestis HOM05D003958 ORTHO05D004864 3.0e-48 195.7 172 59.9
unitig_62.g23558 Utricularia gibba HOM05D003958 ORTHO05D004864 2.2e-46 189.5 126 74.6
SMO361G0280 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 6.3e-46 188.0 173 60.1
SMO361G0823 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 6.3e-46 188.0 173 60.1
Dinv35088 Davidia involucrata HOM05D003958 ORTHO05D004864 1.5e-44 183.3 124 79.0
Cre05.g244236 Chlamydomonas reinhardtii HOM05D003958 ORTHO05D004864 5.7e-39 164.9 172 53.5
MCO10G191 Micromonas commoda HOM05D003958 ORTHO05D004864 2.6e-36 156.0 172 51.7
PRCOL_00006622 Prasinoderma coloniale HOM05D003958 ORTHO05D004864 3.4e-36 155.6 179 48.0
BcaC01g04875 Brassica carinata HOM05D003958 ORTHO05D004864 2.5e-34 149.4 150 56.7
Atru.chr6.2249 Acer truncatum HOM05D003958 ORTHO05D004864 7.2e-34 147.9 106 76.4
Eucgr.L02705 Eucalyptus grandis HOM05D003958 ORTHO05D004864 6.7e-32 141.4 89 74.2
SGA_v2.0_scaffold34G13865 Striga asiatica HOM05D003958 ORTHO05D004864 1.1e-31 140.6 188 48.4
Ah.07g203280 Amaranthus hybridus HOM05D003958 ORTHO05D004864 1.7e-30 136.7 164 50.0
Ah.07g203270 Amaranthus hybridus HOM05D003958 ORTHO05D004864 4.5e-28 128.6 94 75.5
Haze_26162 Corylus avellana HOM05D003958 ORTHO05D004864 5.5e-26 121.7 144 47.2
Gohir.A06G000101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 5.5e-26 121.7 93 72.0
Gohir.A03G000004 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.5e-23 113.6 86 73.3
C03p32750 Brassica napus HOM05D003958 ORTHO05D004864 7.5e-23 111.3 91 60.4
BolC3t15610H Brassica oleracea HOM05D003958 ORTHO05D004864 7.5e-23 111.3 91 60.4
Gohir.A10G243400 Gossypium hirsutum HOM05D003958 ORTHO05D004864 9.7e-23 110.9 86 72.1
FAN14G4368 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.0e-20 103.2 79 62.0
Sopen06g018800 Solanum pennellii HOM05D003958 ORTHO05D004864 5.9e-20 101.7 75 73.3
Gohir.D01G222101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.7e-17 92.8 66 74.2
Gohir.A01G232100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 6.1e-17 91.7 68 72.1
Gohir.D09G250100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 6.1e-17 91.7 65 76.9
Gohir.D11G349300 Gossypium hirsutum HOM05D003958 ORTHO05D004864 6.1e-17 91.7 65 76.9
Gorai.007G380200 Gossypium raimondii HOM05D003958 ORTHO05D004864 6.1e-17 91.7 68 72.1
Gohir.D03G178200 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.3e-16 89.7 65 73.8
Gohir.D08G275428 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.0e-16 89.4 65 75.4
Gorai.004G293900 Gossypium raimondii HOM05D003958 ORTHO05D004864 3.0e-16 89.4 65 75.4
Gorai.006G274500 Gossypium raimondii HOM05D003958 ORTHO05D004864 3.0e-16 89.4 65 75.4
Gohir.A09G249500 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.2e-15 87.4 64 71.9
CSS0019434 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 1.5e-15 87.0 63 77.8
FAN05G2568 Fragaria x ananassa HOM05D003958 ORTHO05D004864 1.5e-15 87.0 58 69.0
Gohir.1Z049410 Gossypium hirsutum HOM05D003958 ORTHO05D004864 7.5e-15 84.7 64 70.3
Atru.chr6.2248 Acer truncatum HOM05D003958 ORTHO05D004864 6.3e-14 81.6 47 76.6
Gohir.D08G275100 Gossypium hirsutum HOM05D003958 ORTHO05D005872 1.1e-13 80.9 50 76.0
Gorai.N025700 Gossypium raimondii HOM05D003958 ORTHO05D005872 1.1e-13 80.9 50 76.0
Gorai.N017600 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.4e-13 80.5 62 69.4
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 2.4e-13 79.7 47 76.6
Gohir.1Z049564 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.1e-13 79.3 50 74.0
Gohir.1Z049570 Gossypium hirsutum HOM05D003958 ORTHO05D005872 3.1e-13 79.3 50 74.0
Gohir.A12G000201 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.2e-12 77.4 127 40.9
Gohir.1Z049515 Gossypium hirsutum HOM05D003958 ORTHO05D015143 4.0e-08 62.4 63 61.9
Gorai.006G275300 Gossypium raimondii HOM05D003958 ORTHO05D015143 2.6e-07 59.7 63 57.1
Gohir.D11G176600 Gossypium hirsutum HOM05D003958 ORTHO05D004864 9.8e-07 57.8 26 92.3
Gorai.007G000600 Gossypium raimondii HOM05D001392 ORTHO05D014312 9.8e-07 57.8 26 92.3
Gorai.013G272500 Gossypium raimondii HOM05D003958 ORTHO05D004864 9.8e-07 57.8 26 92.3
Gohir.D07G000766 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.7e-06 55.8 26 88.5


User provided reference genes

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