Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.FS5X82 Arachis hypogaea HOM05D006306 ORTHO05D007912 1.1e-162 576.6 298 100.0
arahy.Tifrunner.gnm1.ann1.U1BTLB Arachis hypogaea HOM05D006306 ORTHO05D007912 2.0e-161 572.4 298 99.3
Ca_10706_v3 Cicer arietinum L. HOM05D006306 ORTHO05D007912 9.6e-111 404.1 290 73.1
Glyma.10G229500 Glycine max HOM05D006306 ORTHO05D007912 2.4e-109 399.4 294 73.1
VMungo0720G2617 Vigna mungo HOM05D006306 ORTHO05D007912 1.2e-105 387.1 294 68.4
Psat6g195200 Pisum sativum HOM05D006306 ORTHO05D007912 4.8e-102 375.2 294 66.0
Phvul.007G076000 Phaseolus vulgaris HOM05D006306 ORTHO05D007912 1.4e-101 373.6 294 67.7
Medtr1g099490 Medicago truncatula HOM05D006306 ORTHO05D007912 2.1e-97 359.8 335 60.3
Lalb_Chr02g0141321 Lupinus albus HOM05D006306 ORTHO05D007912 5.6e-95 351.7 260 71.5
Lj5g0016065 Lotus japonicus HOM05D006306 ORTHO05D007912 5.3e-93 345.1 302 63.2
CiPaw.06G005500 Carya illinoinensis HOM05D006306 ORTHO05D007912 4.6e-89 332.0 301 58.5
GSVIVG01028794001 Vitis vinifera HOM05D006306 ORTHO05D007912 1.8e-88 330.1 300 59.7
Cfa016324 Carpinus fangiana HOM05D006306 ORTHO05D007912 1.1e-87 327.4 302 60.6
Prupe.2G303600 Prunus persica HOM05D006306 ORTHO05D007912 2.8e-86 322.8 293 60.1
MD01G1211200 Malus domestica HOM05D006306 ORTHO05D007912 1.1e-85 320.9 293 59.7
QL09p012095 Quercus lobata HOM05D006306 ORTHO05D007912 1.3e-80 303.9 299 56.2
Ciclev10005526m.g Citrus clementina HOM05D006306 ORTHO05D007912 3.9e-80 302.4 300 56.0
TAR636G3656 Trochodendron aralioides HOM05D006306 ORTHO05D007912 1.1e-79 300.8 307 52.8
CANSAT21G1468 Cannabis sativa HOM05D006306 ORTHO05D007912 1.5e-79 300.4 304 52.3
Haze_00077 Corylus avellana HOM05D000147 ORTHO05D002016 9.7e-79 297.7 294 57.1
Gorai.008G272800 Gossypium raimondii HOM05D006306 ORTHO05D007912 1.3e-78 297.4 299 52.5
Atru.chr1.326 Acer truncatum HOM05D006306 ORTHO05D007912 8.2e-78 294.7 299 53.8
COL.COLO4_30262 Corchorus olitorius HOM05D006306 ORTHO05D007912 4.1e-77 292.4 300 53.7
Duzib084G0050 Durio zibethinus HOM05D006306 ORTHO05D007912 4.1e-77 292.4 309 51.1
PGR142G3937 Punica granatum HOM05D006306 ORTHO05D007912 5.3e-77 292.0 300 53.3
RcHm_v2.0_Chr1g0379511 Rosa chinensis HOM05D006306 ORTHO05D007912 1.7e-75 287.0 293 53.9
Sc19g0001030 Simmondsia chinensis HOM05D006306 ORTHO05D007912 5.0e-75 285.4 298 55.0
FvH4_7g30600 Fragaria vesca HOM05D006306 ORTHO05D007912 4.2e-74 282.3 294 54.8
FAN06G4689 Fragaria x ananassa HOM05D006306 ORTHO05D007912 4.2e-74 282.3 294 54.8
FAN06G4805 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.1e-73 280.0 294 54.4
Cpa.g.sc3.9 Carica papaya HOM05D006306 ORTHO05D007912 4.6e-73 278.9 301 52.2
FAN01G1106 Fragaria x ananassa HOM05D006306 ORTHO05D007912 7.9e-73 278.1 294 54.1
TWI39G0038 Tripterygium wilfordii HOM05D006306 ORTHO05D007912 7.9e-73 278.1 300 51.7
CSS0007539 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 1.0e-72 277.7 303 52.5
FAN10G3235 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.5e-71 273.9 294 52.7
Lj1A1009G47 Lonicera japonica HOM05D006306 ORTHO05D007912 7.4e-71 271.6 306 51.3
Hma1.2p1_0142F.1_g064400 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 1.7e-70 270.4 291 51.2
MBI06_g33547_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 2.2e-70 270.0 303 49.2
PSO170G4684 Papaver somniferum HOM05D006306 ORTHO05D007912 2.2e-70 270.0 300 49.7
Sopen03g003670 Solanum pennellii HOM05D006306 ORTHO05D007912 2.8e-70 269.6 293 51.2
Nitab4.5_0001748g0060 Nicotiana tabacum HOM05D006306 ORTHO05D007912 3.7e-70 269.2 290 50.7
TPR.G7772 Trifolium pratense HOM05D006306 ORTHO05D007912 1.4e-69 267.3 217 68.2
Peaxi162Scf00057g00026 Petunia axillaris HOM05D006306 ORTHO05D007912 1.8e-69 266.9 292 49.7
PSO063G5557 Papaver somniferum HOM05D006306 ORTHO05D007912 2.4e-69 266.5 300 49.7
FAN10G1990 Fragaria x ananassa HOM05D006306 ORTHO05D007912 3.1e-69 266.2 322 48.8
Solyc03g007750.3 Solanum lycopersicum HOM05D006306 ORTHO05D007912 1.2e-68 264.2 293 50.9
Eucgr.K00302 Eucalyptus grandis HOM05D006306 ORTHO05D007912 3.4e-68 262.7 299 49.8
RhsimUnG0097700 Rhododendron simsii HOM05D006306 ORTHO05D007912 1.0e-67 261.2 299 47.2
PGSC0003DMG400019962 Solanum tuberosum HOM05D006306 ORTHO05D007912 1.0e-67 261.2 291 49.5
Nitab4.5_0008026g0020 Nicotiana tabacum HOM05D006306 ORTHO05D007912 2.9e-67 259.6 294 50.0
Gohir.A12G254499 Gossypium hirsutum HOM05D006306 ORTHO05D007912 3.8e-67 259.2 294 49.0
Hund11704 Selenicereus undatus HOM05D006306 ORTHO05D007912 6.5e-67 258.5 279 50.2
ClCG01G000830 Citrullus lanatus HOM05D006306 ORTHO05D007912 3.2e-66 256.1 294 49.0
CAN.G926.4 Capsicum annuum HOM05D006306 ORTHO05D007912 7.2e-66 255.0 294 46.9
Sed0005488 Sechium edule HOM05D006306 ORTHO05D007912 3.6e-65 252.7 295 48.5
Rhsim03G0195700 Rhododendron simsii HOM05D006306 ORTHO05D007912 1.0e-64 251.1 299 45.8
AUR62021081 Chenopodium quinoa HOM05D006306 ORTHO05D007912 5.2e-64 248.8 298 47.0
CsaV3_5G000970 Cucumis sativus L. HOM05D006306 ORTHO05D007912 1.1e-63 247.7 294 46.3
Aqoxy5G04066 Aquilegia oxysepala HOM05D006306 ORTHO05D007912 2.0e-63 246.9 298 46.6
Potri.012G035500 Populus trichocarpa HOM05D006306 ORTHO05D007912 2.2e-62 243.4 296 47.0
ATR1131G020 Amborella trichopoda HOM05D006306 ORTHO05D007912 6.3e-62 241.9 279 47.3
Lsat_1_v5_gn_8_6341 Lactuca sativa HOM05D006306 ORTHO05D007912 3.5e-60 236.1 298 44.3
Sabra12G0024000 Salix brachista HOM05D006306 ORTHO05D007912 7.7e-60 235.0 301 44.9
Cc02_g02170 Coffea canephora HOM05D006306 ORTHO05D007912 1.7e-59 233.8 293 46.1
MSTRG.27066 Avicennia marina HOM05D006306 ORTHO05D007912 2.2e-59 233.4 296 44.9
Gohir.D12G255200 Gossypium hirsutum HOM05D006306 ORTHO05D007912 5.5e-58 228.8 209 57.4
THA.LOC104825120 Tarenaya hassleriana HOM05D006306 ORTHO05D007912 3.6e-57 226.1 295 44.7
HanXRQChr05g0141161 Helianthus annuus HOM05D006306 ORTHO05D007912 4.7e-57 225.7 299 43.1
Thecc.03G188100 Theobroma cacao HOM05D006306 ORTHO05D007912 1.5e-55 220.7 204 57.8
Migut.F00264 Erythranthe guttata HOM05D006306 ORTHO05D007912 8.2e-54 214.9 291 41.2
Manes.06G154300 Manihot esculenta HOM05D006306 ORTHO05D007912 1.1e-53 214.5 207 53.6
CDE08G0346 Ceratophyllum demersum HOM05D006306 ORTHO05D007912 5.3e-53 212.2 287 44.3
unitig_92.g28262 Utricularia gibba HOM05D006306 ORTHO05D001071 1.9e-50 203.8 296 40.5
SalBow4G0206 Salvia bowleyana HOM05D006306 ORTHO05D007912 3.2e-50 203.0 272 43.0
SGA_v2.0_scaffold192G40609 Striga asiatica HOM05D006306 ORTHO05D007912 7.2e-50 201.8 298 41.9
vmacro06599 Vaccinium macrocarpon HOM05D006306 ORTHO05D007912 7.2e-50 201.8 335 38.5
Carub.0008s1304 Capsella rubella HOM05D006306 ORTHO05D007912 1.4e-48 197.6 291 40.2
MBI17_g41518_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 5.2e-48 195.7 299 41.8
AT5G52880 Arabidopsis thaliana HOM05D006306 ORTHO05D007912 2.0e-47 193.7 288 41.0
AL8G27340 Arabidopsis lyrata HOM05D006306 ORTHO05D007912 4.4e-47 192.6 288 39.9
HPP92_009775 Vanilla planifolia HOM05D006306 ORTHO05D007912 2.8e-46 189.9 282 39.7
RcHm_v2.0_Chr1g0379281 Rosa chinensis HOM05D006306 ORTHO05D007912 1.2e-44 184.5 162 58.6
BcaB08g35641 Brassica carinata HOM05D006306 ORTHO05D007912 4.5e-44 182.6 289 39.1
AUR62031450 Chenopodium quinoa HOM05D006306 ORTHO05D007912 4.5e-44 182.6 215 47.9
BcaC04g20532 Brassica carinata HOM05D006306 ORTHO05D007912 7.7e-44 181.8 290 37.9
BolC9t57127H Brassica oleracea HOM05D006306 ORTHO05D007912 1.3e-43 181.0 290 37.9
Nn1g01725 Nelumbo nucifera HOM05D006306 ORTHO05D007912 8.5e-43 178.3 294 36.7
Zm00001eb293490 Zea mays HOM05D006306 ORTHO05D007912 4.4e-39 166.0 160 51.9
Hma1.2p1_0142F.1_g064410 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 2.8e-38 163.3 202 46.5
DCAR_020289 Daucus carota HOM05D006306 ORTHO05D007912 1.8e-37 160.6 191 46.1
Aa31LG3G9130 Aethionema arabicum HOM05D006306 ORTHO05D007912 1.2e-36 157.9 294 37.1
RcHm_v2.0_Chr1g0379501 Rosa chinensis HOM05D006306 ORTHO05D007912 1.2e-36 157.9 209 44.5
ECA233G3199 Erigeron canadensis HOM05D006306 ORTHO05D007912 1.6e-36 157.5 236 41.1
BcaC04g20531 Brassica carinata HOM05D006306 ORTHO05D007912 1.3e-35 154.5 245 38.4
AagrBONN_evm.TU.Sc2ySwM_228.2460 Anthoceros agrestis HOM05D006306 ORTHO05D007912 3.8e-35 152.9 314 33.4
TPR.G10934 Trifolium pratense HOM05D006306 ORTHO05D007912 3.8e-35 152.9 95 82.1
RcHm_v2.0_Chr1g0378761 Rosa chinensis HOM05D006306 ORTHO05D007912 2.1e-33 147.1 243 38.3
Thhalv10014697m.g Eutrema salsugineum HOM05D006306 ORTHO05D007912 1.1e-29 134.8 203 39.9
Os05g0526300 Oryza sativa ssp. japonica HOM05D006306 ORTHO05D007912 2.4e-29 133.7 138 51.4
AagrBONN_evm.TU.Sc2ySwM_117.3502 Anthoceros agrestis HOM05D006306 ORTHO05D007912 5.4e-29 132.5 314 32.2
BolC9t57131H Brassica oleracea HOM05D006306 ORTHO05D007912 1.2e-28 131.3 150 46.7
C09p42490 Brassica napus HOM05D006306 ORTHO05D007912 5.9e-28 129.0 233 36.1
CARHR265820 Cardamine hirsuta HOM05D006306 ORTHO05D007912 5.9e-28 129.0 230 36.1
BcaB08g35646 Brassica carinata HOM05D006306 ORTHO05D007912 7.8e-28 128.6 243 34.6
MELO3C034012.2 Cucumis melo HOM05D006306 ORTHO05D007912 1.1e-26 124.8 204 36.8
Glyma.20G163801 Glycine max HOM05D006306 ORTHO05D007912 1.9e-26 124.0 128 51.6
CBR_g45678 Chara braunii HOM05D006306 ORTHO05D007912 2.5e-26 123.6 344 27.3
Pp3c4_17520 Physcomitrium patens HOM05D006306 ORTHO05D007912 1.6e-25 120.9 228 35.5
Ah.13g069400 Amaranthus hybridus HOM05D006306 ORTHO05D007912 2.1e-25 120.6 109 58.7
Sp6g15040 Schrenkiella parvula HOM05D006306 ORTHO05D007912 4.7e-25 119.4 304 29.3
MBI12_g17737_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 8.0e-25 118.6 112 57.1
CAN.G926.5 Capsicum annuum HOM05D006306 ORTHO05D007912 8.9e-24 115.2 147 39.5
Aa31LG3G9120 Aethionema arabicum HOM05D006306 ORTHO05D007912 2.0e-23 114.0 206 35.9
Ah.13g069420 Amaranthus hybridus HOM05D006306 ORTHO05D007912 1.3e-22 111.3 125 53.6
ClCG04G002190 Citrullus lanatus HOM05D006306 ORTHO05D007912 2.4e-21 107.1 81 72.8
ClCG04G002620 Citrullus lanatus HOM05D006306 ORTHO05D007912 2.4e-21 107.1 81 72.8
Pp3c3_15840 Physcomitrium patens HOM05D006306 ORTHO05D007912 1.6e-20 104.4 277 27.1
A10p10330 Brassica napus HOM05D006306 ORTHO05D007912 2.0e-20 104.0 112 49.1
Dinv28363 Davidia involucrata HOM05D000147 ORTHO05D002016 1.7e-19 100.9 78 67.9
COL.COLO4_02740 Corchorus olitorius HOM05D006306 ORTHO05D007912 4.7e-17 92.8 62 71.0
Prupe.2G304000 Prunus persica HOM05D006306 ORTHO05D007912 1.1e-16 91.7 62 66.1
Prupe.2G291600 Prunus persica HOM05D006306 ORTHO05D007912 3.1e-16 90.1 62 64.5
C09p42540 Brassica napus HOM05D006306 ORTHO05D007912 1.5e-15 87.8 94 51.1
CSS0044760 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 2.0e-15 87.4 61 67.2
RcHm_v2.0_Chr1g0379101 Rosa chinensis HOM05D006306 ORTHO05D007912 5.1e-11 72.8 51 62.7
CSS0035371 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 6.6e-11 72.4 133 31.6
SMO325G0002 Selaginella moellendorffii HOM05D006584 ORTHO05D007640 1.2e-07 61.6 195 28.7


User provided reference genes

Program Settings