Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 0.0e+00 1310.4 697 100.0
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 0.0e+00 1296.6 697 98.0
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 6.8e-192 674.9 713 60.3
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 6.4e-190 668.3 714 56.4
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 5.6e-186 655.2 714 56.6
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 2.7e-180 636.3 711 51.8
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 2.1e-177 626.7 713 52.3
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 3.9e-171 605.9 724 51.0
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 1.1e-154 551.2 732 47.1
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 5.8e-151 538.9 714 46.4
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 3.9e-139 499.6 706 44.6
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 4.3e-138 496.1 721 44.4
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 2.8e-137 493.4 717 42.5
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 4.1e-136 489.6 714 42.0
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 6.5e-134 482.3 714 45.2
Psat2g160960 Pisum sativum HOM05D004086 ORTHO05D004641 8.5e-134 481.9 670 45.7
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 1.4e-133 481.1 736 41.8
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 1.9e-133 480.7 713 44.3
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 5.5e-133 479.2 724 43.4
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 7.2e-133 478.8 714 45.1
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.0e-131 474.9 724 42.7
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 1.8e-131 474.2 711 41.9
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 2.2e-129 467.2 714 41.5
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 8.2e-129 465.3 711 41.6
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 1.1e-128 464.9 719 42.0
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 4.1e-128 463.0 714 44.1
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 1.5e-127 461.1 717 41.7
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 2.6e-127 460.3 718 42.5
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 1.0e-126 458.4 718 42.3
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 8.5e-126 455.3 733 40.0
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 1.2e-124 451.4 718 42.6
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 1.8e-123 447.6 721 40.6
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 2.3e-123 447.2 709 41.9
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 8.8e-123 445.3 709 40.2
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 2.0e-122 444.1 729 40.1
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 2.2e-121 440.7 707 41.9
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 4.8e-121 439.5 710 42.4
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 1.2e-119 434.9 702 41.5
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.0e-118 431.8 729 39.4
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 5.0e-118 429.5 731 39.0
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 1.9e-117 427.6 712 40.6
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 9.4e-117 425.2 713 38.8
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 2.1e-116 424.1 655 42.1
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 6.1e-116 422.5 716 42.7
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 7.9e-116 422.2 719 39.9
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 6.3e-113 412.5 646 40.6
Medtr5g026040 Medicago truncatula HOM05D004086 ORTHO05D004641 5.3e-112 409.5 518 47.5
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 7.0e-112 409.1 714 39.1
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 2.0e-111 407.5 722 37.7
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 2.2e-110 404.1 610 40.3
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 1.1e-109 401.7 711 40.5
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 3.2e-109 400.2 707 40.7
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 9.4e-109 398.7 591 41.3
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 2.1e-108 397.5 649 41.0
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 3.6e-108 396.7 677 40.2
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 4.7e-108 396.4 677 40.0
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 6.1e-108 396.0 726 37.2
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 6.7e-107 392.5 732 38.3
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 1.7e-105 387.9 672 39.3
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 1.7e-105 387.9 677 39.7
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 4.8e-105 386.3 722 38.0
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 1.6e-103 381.3 659 37.9
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 2.0e-103 380.9 710 37.6
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 5.0e-102 376.3 644 41.0
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 7.2e-101 372.5 724 37.0
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 9.4e-101 372.1 724 37.3
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 3.6e-100 370.2 717 37.0
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 4.7e-100 369.8 704 39.3
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 1.0e-99 368.6 621 39.8
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 1.8e-99 367.9 718 36.2
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 1.3e-97 361.7 715 37.1
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 1.3e-97 361.7 709 37.4
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 3.7e-97 360.1 524 42.4
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 1.4e-96 358.2 705 38.0
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.8e-96 357.8 787 34.7
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 3.5e-95 353.6 718 36.2
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 3.5e-95 353.6 718 35.7
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 2.9e-94 350.5 605 38.3
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 3.8e-94 350.1 595 38.0
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 1.9e-93 347.8 735 35.2
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 2.8e-92 344.0 599 39.6
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 5.7e-90 336.3 703 35.7
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 7.5e-90 335.9 674 35.8
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 3.7e-89 333.6 597 39.0
Atru.chr3.545 Acer truncatum HOM05D004086 ORTHO05D004641 6.3e-89 332.8 608 37.3
Oeu053005.1 Olea europaea HOM05D004086 ORTHO05D004641 5.4e-88 329.7 489 41.5
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 2.0e-87 327.8 711 34.0
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 3.5e-87 327.0 554 39.9
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 1.9e-85 321.2 711 33.9
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 1.2e-84 318.5 615 36.3
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 1.4e-83 315.1 733 34.0
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 2.3e-83 314.3 693 33.8
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 8.3e-81 305.8 695 34.2
SpUn0021_0010 Schrenkiella parvula HOM05D004086 ORTHO05D004641 2.4e-80 304.3 525 38.5
PSO541G3560 Papaver somniferum HOM05D004086 ORTHO05D004641 3.0e-78 297.4 713 34.4
COL.COLO4_14865 Corchorus olitorius HOM05D004086 ORTHO05D004641 3.3e-77 293.9 500 41.2
AUR62025406 Chenopodium quinoa HOM05D004086 ORTHO05D004641 1.2e-76 292.0 646 35.0
AagrBONN_evm.TU.Sc2ySwM_344.3508 Anthoceros agrestis HOM05D004086 ORTHO05D004641 4.9e-73 280.0 695 33.2
Haze_02099 Corylus avellana HOM05D004086 ORTHO05D004641 8.3e-73 279.3 695 34.2
Haze_15127 Corylus avellana HOM05D004086 ORTHO05D004641 2.4e-72 277.7 489 40.3
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 7.0e-72 276.2 715 32.2
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 2.3e-70 271.2 674 32.3
Thhalv10023969m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 1.6e-68 265.0 515 35.5
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 4.4e-66 256.9 616 33.6
Ah.15g091670 Amaranthus hybridus HOM05D004086 ORTHO05D004641 8.3e-65 252.7 468 35.3
MD15G1266000 Malus domestica HOM05D004086 ORTHO05D004641 1.6e-63 248.4 552 35.3
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 1.7e-62 245.0 626 31.6
Nitab4.5_0001279g0090 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.9e-61 241.5 490 35.5
Pp3c2_15450 Physcomitrium patens HOM05D004086 ORTHO05D004641 1.2e-60 238.8 738 30.5
FvH4_2g10200 Fragaria vesca HOM05D004086 ORTHO05D004641 1.6e-60 238.4 490 34.1
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 6.2e-60 236.5 673 30.6
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 6.2e-60 236.5 673 30.6
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 1.1e-59 235.7 617 31.4
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 1.4e-59 235.3 667 30.7
AL5G27650 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 4.0e-59 233.8 462 35.3
Ca_29955_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 1.5e-58 231.9 374 40.1
Cpa.g.sc353.3 Carica papaya HOM05D004086 ORTHO05D004641 4.4e-58 230.3 469 35.6
CDE05G2435 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 7.8e-55 219.5 422 35.8
Sc17g0002710 Simmondsia chinensis HOM05D004086 ORTHO05D004641 1.1e-53 215.7 386 37.6
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 2.8e-52 211.1 647 30.3
CDE10G1264 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 4.4e-50 203.8 625 28.8
Nitab4.5_0004445g0020 Nicotiana tabacum HOM05D004086 ORTHO05D004641 7.3e-45 186.4 336 34.2
Haze_02100 Corylus avellana HOM05D004086 ORTHO05D004641 1.5e-42 178.7 284 44.7
HPP92_026151 Vanilla planifolia HOM05D004086 ORTHO05D004641 6.0e-39 166.8 448 29.9
BcaC03g17736 Brassica carinata HOM05D004086 ORTHO05D004641 1.8e-38 165.2 283 39.2
A02p38220 Brassica napus HOM05D004086 ORTHO05D004641 8.7e-38 162.9 286 36.7
AL253U10010 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 1.2e-34 152.5 135 58.5
Zm00001eb269010 Zea mays HOM05D004086 ORTHO05D004641 1.2e-34 152.5 245 39.6
FAN24G1278 Fragaria x ananassa HOM05D004086 ORTHO05D004641 3.8e-33 147.5 441 30.2
CDE10G0302 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 7.1e-32 143.3 196 41.3
CARHR050710 Cardamine hirsuta HOM05D004086 ORTHO05D004641 1.3e-30 139.0 218 37.6
C02p57460 Brassica napus HOM05D004086 ORTHO05D004641 9.6e-29 132.9 283 35.3
CDE05G1436 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 2.1e-28 131.7 167 43.7
Cpa.g.sc353.1 Carica papaya HOM05D004086 ORTHO05D004641 1.4e-27 129.0 235 39.1
Haze_15116 Corylus avellana HOM05D004086 ORTHO05D004641 2.9e-25 121.3 244 35.2
CDE10G0017 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.2e-23 115.9 238 36.6
Glyma.01G232951 Glycine max HOM05D001514 ORTHO05D002956 3.9e-22 110.9 237 35.4
PSO017G0414 Papaver somniferum HOM05D004086 ORTHO05D004641 1.1e-19 102.8 138 45.7
Zm00001eb269020 Zea mays HOM05D004086 ORTHO05D004641 4.1e-19 100.9 391 28.9
Ah.15g091620 Amaranthus hybridus HOM05D004086 ORTHO05D004641 2.6e-18 98.2 103 50.5
BolC2t11821H Brassica oleracea HOM05D004086 ORTHO05D004641 3.8e-17 94.4 121 47.1
SEGI_33702 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 2.5e-16 91.7 337 31.5
PGSC0003DMG400012686 Solanum tuberosum HOM05D004086 ORTHO05D004641 9.4e-16 89.7 197 28.9
BcaB07g34160 Brassica carinata HOM05D004086 ORTHO05D004641 4.6e-15 87.4 133 39.1
SEGI_36884 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 4.6e-15 87.4 82 51.2
Ca_29956_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 1.8e-14 85.5 102 52.0
SHI06749 Sapria himalayana HOM05D004086 ORTHO05D004641 5.1e-14 84.0 85 48.2
Lj4A239T53 Lonicera japonica HOM05D004086 ORTHO05D004641 8.8e-14 83.2 131 40.5
Cre10.g454650 Chlamydomonas reinhardtii HOM05D004086 ORTHO05D004641 2.5e-13 81.6 132 37.1
SEGI_29880 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 2.5e-13 81.6 79 49.4
SHI06750 Sapria himalayana HOM05D004086 ORTHO05D004641 4.3e-13 80.9 130 39.2
Gohir.A11G236200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 4.8e-12 77.4 74 54.1
MELO3C034917.2 Cucumis melo HOM05D004086 ORTHO05D004641 8.2e-12 76.6 62 54.8
Oeu053017.4 Olea europaea HOM05D004086 ORTHO05D004641 6.9e-11 73.6 106 39.6
QL06p009809 Quercus lobata HOM05D004086 ORTHO05D004641 5.9e-10 70.5 82 46.3
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 2.5e-08 65.1 200 30.5
SEGI_38277 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 1.6e-07 62.4 166 32.5
Oeu053007.1 Olea europaea HOM05D004086 ORTHO05D004641 4.7e-07 60.8 344 26.5
Oeu014919.1 Olea europaea HOM05D004086 ORTHO05D004641 1.4e-06 59.3 185 30.8


User provided reference genes

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