Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.FQMP84 Arachis hypogaea HOM05D005255 ORTHO05D006276 0.0e+00 1325.8 666 100.0
arahy.Tifrunner.gnm1.ann1.5V2BX3 Arachis hypogaea HOM05D005255 ORTHO05D006276 0.0e+00 1298.1 668 97.6
Glyma.03G132200 Glycine max HOM05D005255 ORTHO05D006276 2.9e-256 888.6 655 70.2
Lj1g0022872 Lotus japonicus HOM05D005255 ORTHO05D006276 4.6e-254 881.3 656 69.4
Glyma.19G134000 Glycine max HOM05D005255 ORTHO05D006276 2.6e-249 865.5 655 69.6
Medtr7g090680 Medicago truncatula HOM05D005255 ORTHO05D006276 1.7e-248 862.8 654 69.4
Lalb_Chr25g0287041 Lupinus albus HOM05D005255 ORTHO05D006276 2.2e-248 862.4 656 69.4
VMungo1383G2357 Vigna mungo HOM05D005255 ORTHO05D006276 3.3e-236 822.0 655 65.6
Phvul.001G128100 Phaseolus vulgaris HOM05D005255 ORTHO05D006276 8.4e-232 807.4 655 65.3
Psat3g075800 Pisum sativum HOM05D005255 ORTHO05D006276 1.4e-223 780.0 650 65.2
TPR.G32740 Trifolium pratense HOM05D005255 ORTHO05D006276 2.0e-217 759.6 631 64.0
CiPaw.09G042700 Carya illinoinensis HOM05D005255 ORTHO05D006276 1.4e-191 673.7 688 54.7
Haze_19754 Corylus avellana HOM05D005255 ORTHO05D006276 3.6e-190 669.1 668 55.7
Cfa016749 Carpinus fangiana HOM05D005255 ORTHO05D006276 1.7e-187 660.2 672 54.8
Atru.chr1.1248 Acer truncatum HOM05D005255 ORTHO05D006276 1.6e-185 653.7 671 53.8
Ca_08423_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 6.5e-184 648.3 566 62.5
Rhsim04G0108300 Rhododendron simsii HOM05D005255 ORTHO05D006276 1.0e-181 641.0 671 54.1
Prupe.7G049600 Prunus persica HOM05D005255 ORTHO05D006276 4.4e-180 635.6 670 52.5
VMungo1383G1524 Vigna mungo HOM05D005255 ORTHO05D006276 2.2e-179 633.3 572 60.1
Manes.09G016721 Manihot esculenta HOM05D005255 ORTHO05D006276 1.1e-178 630.9 701 52.1
Manes.09G016500 Manihot esculenta HOM05D005255 ORTHO05D006276 1.3e-176 624.0 690 51.7
Actinidia38145 Actinidia chinensis HOM05D005255 ORTHO05D006276 7.2e-175 618.2 674 52.7
QL07p004453 Quercus lobata HOM05D005255 ORTHO05D006276 2.3e-173 613.2 619 53.8
TWI74G1492 Tripterygium wilfordii HOM05D005255 ORTHO05D006276 4.0e-173 612.5 659 51.6
Eucgr.A02293 Eucalyptus grandis HOM05D005255 ORTHO05D006276 5.2e-173 612.1 674 50.7
Sabra06G0031000 Salix brachista HOM05D005255 ORTHO05D006276 2.6e-172 609.8 673 51.0
Duzib093G1389 Durio zibethinus HOM05D005255 ORTHO05D006276 8.3e-171 604.7 694 49.3
Thecc.05G144600 Theobroma cacao HOM05D005255 ORTHO05D006276 8.3e-171 604.7 691 49.3
RcHm_v2.0_Chr3g0484561 Rosa chinensis HOM05D005255 ORTHO05D006276 3.5e-169 599.4 662 50.6
CSS0035930 Camellia sinensis var. sinensis HOM05D005255 ORTHO05D006276 5.9e-169 598.6 679 49.8
COL.COLO4_21290 Corchorus olitorius HOM05D005255 ORTHO05D006276 5.9e-169 598.6 695 48.8
CANSAT80G1558 Cannabis sativa HOM05D005255 ORTHO05D006276 3.8e-168 595.9 686 50.4
Dinv30292 Davidia involucrata HOM05D005255 ORTHO05D006276 2.0e-164 583.6 684 50.3
GSVIVG01033557001 Vitis vinifera HOM05D005255 ORTHO05D006276 3.7e-163 579.3 649 51.3
Cc06_g18410 Coffea canephora HOM05D005255 ORTHO05D006276 1.6e-161 573.9 663 48.1
Migut.J01697 Erythranthe guttata HOM05D005255 ORTHO05D006276 1.3e-160 570.9 679 48.9
ECA236G0023 Erigeron canadensis HOM05D005255 ORTHO05D006276 8.6e-160 568.2 671 48.4
Potri.006G045100 Populus trichocarpa HOM05D005255 ORTHO05D006276 2.5e-159 566.6 582 53.3
Sopen04g008740 Solanum pennellii HOM05D005255 ORTHO05D006276 3.3e-159 566.2 680 47.8
Solyc04g017650.4 Solanum lycopersicum HOM05D005255 ORTHO05D006276 5.6e-159 565.5 679 47.4
ClCG04G003970 Citrullus lanatus HOM05D005255 ORTHO05D006276 6.1e-158 562.0 607 51.2
PSO339G5261 Papaver somniferum HOM05D005255 ORTHO05D006276 3.0e-157 559.7 678 47.3
HanXRQChr06g0176811 Helianthus annuus HOM05D005255 ORTHO05D006276 4.0e-157 559.3 654 46.6
Nn7g36447 Nelumbo nucifera HOM05D005255 ORTHO05D006276 3.4e-156 556.2 689 46.0
Sed0023795 Sechium edule HOM05D005255 ORTHO05D006276 5.7e-156 555.4 607 50.4
Ciclev10006800m.g Citrus clementina HOM05D005255 ORTHO05D006276 9.8e-156 554.7 660 48.5
SalBow6G4730 Salvia bowleyana HOM05D005255 ORTHO05D006276 6.4e-155 552.0 671 46.9
DCAR_020535 Daucus carota HOM05D005255 ORTHO05D006276 2.7e-153 546.6 668 45.2
Lj1A1118T28 Lonicera japonica HOM05D005255 ORTHO05D006276 2.3e-152 543.5 589 50.3
Thhalv10016390m.g Eutrema salsugineum HOM05D005255 ORTHO05D006276 1.6e-150 537.3 665 46.0
PGR031G1801 Punica granatum HOM05D005255 ORTHO05D006276 1.6e-150 537.3 614 48.4
CAN.G1237.20 Capsicum annuum HOM05D005255 ORTHO05D006276 4.7e-150 535.8 667 46.5
THA.LOC104817056 Tarenaya hassleriana HOM05D005255 ORTHO05D006276 1.1e-149 534.6 672 46.6
CANSAT80G0695 Cannabis sativa HOM05D005255 ORTHO05D006276 1.8e-149 533.9 589 51.6
Aa31LG1G23460 Aethionema arabicum HOM05D005255 ORTHO05D006276 3.1e-149 533.1 679 44.5
Lj1C1121T6 Lonicera japonica HOM05D005255 ORTHO05D006276 3.1e-149 533.1 567 51.0
Peaxi162Scf00130g01019 Petunia axillaris HOM05D005255 ORTHO05D006276 2.0e-148 530.4 666 44.9
AT2G41450 Arabidopsis thaliana HOM05D005255 ORTHO05D006276 2.6e-148 530.0 661 44.8
Aqoxy2G00272 Aquilegia oxysepala HOM05D005255 ORTHO05D006276 4.4e-148 529.3 707 45.4
Oeu008184.2 Olea europaea HOM05D005255 ORTHO05D006276 5.8e-148 528.9 676 46.2
Hund24659 Selenicereus undatus HOM05D005255 ORTHO05D006276 7.5e-148 528.5 687 45.1
Sp4g23710 Schrenkiella parvula HOM05D005255 ORTHO05D006276 9.8e-148 528.1 675 44.4
CARHR136560 Cardamine hirsuta HOM05D005255 ORTHO05D006276 2.2e-147 526.9 649 45.5
Nitab4.5_0005195g0020 Nicotiana tabacum HOM05D005255 ORTHO05D006276 1.4e-146 524.2 660 46.1
EL10Ac3g07169 Beta vulgaris HOM05D005255 ORTHO05D006276 5.4e-146 522.3 659 46.0
MELO3C014208.2 Cucumis melo HOM05D005255 ORTHO05D006276 3.9e-144 516.2 620 47.6
CDE08G0636 Ceratophyllum demersum HOM05D005255 ORTHO05D006276 1.1e-143 514.6 649 45.1
SGA_v2.0_scaffold105G30345 Striga asiatica HOM05D005255 ORTHO05D006276 2.5e-143 513.5 731 43.6
AUR62030394 Chenopodium quinoa HOM05D005255 ORTHO05D006276 1.6e-142 510.8 672 43.9
TAR623G1148 Trochodendron aralioides HOM05D005255 ORTHO05D006276 1.6e-142 510.8 681 46.0
AL4G39520 Arabidopsis lyrata HOM05D005255 ORTHO05D006276 6.2e-142 508.8 646 44.1
Carub.0004s2374 Capsella rubella HOM05D005255 ORTHO05D006276 1.5e-140 504.2 598 46.7
Lsat_1_v5_gn_8_83080 Lactuca sativa HOM05D005255 ORTHO05D006276 2.4e-138 496.9 576 48.4
Ah.13g076740 Amaranthus hybridus HOM05D005255 ORTHO05D006276 1.3e-136 491.1 676 42.3
C04p02730 Brassica napus HOM05D005255 ORTHO05D006276 3.0e-136 490.0 592 44.9
BolC4t21913H Brassica oleracea HOM05D005255 ORTHO05D006276 3.0e-136 490.0 592 44.9
AUR62026140 Chenopodium quinoa HOM05D005255 ORTHO05D006276 1.5e-135 487.6 709 42.5
BraA05t19224Z Brassica rapa HOM05D005255 ORTHO05D006276 1.9e-135 487.3 594 43.9
BcaC02g12783 Brassica carinata HOM05D005255 ORTHO05D006276 2.5e-135 486.9 593 44.2
MBI19_g17528_MAGBIO Magnolia biondii HOM05D005255 ORTHO05D006276 2.5e-135 486.9 722 40.6
Zm00001eb286800 Zea mays HOM05D005255 ORTHO05D006276 3.3e-135 486.5 675 42.7
A05p02290 Brassica napus HOM05D005255 ORTHO05D006276 1.2e-132 478.0 620 42.4
Nitab4.5_0011420g0030 Nicotiana tabacum HOM05D005255 ORTHO05D006276 1.1e-130 471.5 722 41.0
Os05g0376600 Oryza sativa ssp. japonica HOM05D005255 ORTHO05D006276 1.6e-129 467.6 679 41.4
ATR0721G141 Amborella trichopoda HOM05D005255 ORTHO05D006276 1.9e-127 460.7 789 37.1
TAR624G0617 Trochodendron aralioides HOM05D005255 ORTHO05D006276 2.1e-118 430.6 529 45.9
TAR623G1440 Trochodendron aralioides HOM05D005255 ORTHO05D006276 5.4e-114 416.0 609 43.0
HPP92_003251 Vanilla planifolia HOM05D005255 ORTHO05D006276 7.9e-113 412.1 633 39.5
Cpa.g.sc120.15 Carica papaya HOM05D005255 ORTHO05D006276 9.9e-108 395.2 528 45.3
FvH4_6g24820 Fragaria vesca HOM05D005255 ORTHO05D006276 2.9e-107 393.7 534 44.2
AagrBONN_evm.TU.Sc2ySwM_228.5074 Anthoceros agrestis HOM05D005255 ORTHO05D006276 3.3e-87 327.0 847 29.6
Sc13g0001470 Simmondsia chinensis HOM05D005255 ORTHO05D006276 2.6e-84 317.4 518 42.5
PGSC0003DMG400012725 Solanum tuberosum HOM05D005255 ORTHO05D006276 1.2e-81 308.5 293 54.6
FAN14G1086 Fragaria x ananassa HOM05D005255 ORTHO05D006276 1.0e-80 305.4 569 37.1
Pp3c8_2040 Physcomitrium patens HOM05D005255 ORTHO05D006276 5.9e-76 289.7 757 28.9
RcHm_v2.0_Chr3g0484121 Rosa chinensis HOM05D005255 ORTHO05D006276 5.5e-74 283.1 198 69.2
Nitab4.5_0000826g0020 Nicotiana tabacum HOM05D005255 ORTHO05D006276 5.2e-72 276.6 313 48.6
CsaV3_4G021950 Cucumis sativus L. HOM05D005255 ORTHO05D006276 7.7e-68 262.7 180 68.3
Pp3c4_1630 Physcomitrium patens HOM05D005255 ORTHO05D006276 1.7e-62 245.0 872 26.4
Pp3c4_1631 Physcomitrium patens HOM05D005255 ORTHO05D006276 1.7e-62 245.0 872 26.4
MSTRG.6398 Avicennia marina HOM05D005255 ORTHO05D006276 3.1e-61 240.7 176 65.9
Mapoly0085s0026 Marchantia polymorpha HOM05D005255 ORTHO05D006276 4.5e-60 236.9 1094 23.8
unitig_8.g3497 Utricularia gibba HOM05D005255 ORTHO05D006276 1.1e-58 232.3 228 53.5
CAN.G1237.18 Capsicum annuum HOM05D005255 ORTHO05D006276 9.4e-58 229.2 161 65.2
Ca_20730_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 2.3e-51 208.0 430 37.4
vmacro09038 Vaccinium macrocarpon HOM05D005255 ORTHO05D006276 1.8e-48 198.4 145 62.8
Ca_13718_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 8.9e-48 196.1 230 52.2
HPP92_003249 Vanilla planifolia HOM05D005255 ORTHO05D006276 1.5e-47 195.3 363 34.7
SEGI_00937 Sequoiadendron giganteum HOM05D005255 ORTHO05D006276 7.5e-47 193.0 177 50.3
Ca_08424_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 2.0e-44 184.9 123 77.2
FAN02G3622 Fragaria x ananassa HOM05D005255 ORTHO05D006276 2.3e-40 171.4 398 35.2
Ca_30365_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 5.8e-39 166.8 198 47.0
Nitab4.5_0001618g0070 Nicotiana tabacum HOM05D005255 ORTHO05D006276 7.5e-39 166.4 124 63.7
MSTRG.6397 Avicennia marina HOM05D005255 ORTHO05D006276 2.9e-38 164.5 323 36.8
Sopen04g008710 Solanum pennellii HOM05D005255 ORTHO05D006276 2.9e-38 164.5 124 64.5
PGSC0003DMG400012726 Solanum tuberosum HOM05D005255 ORTHO05D006276 1.6e-36 158.7 224 43.3
vmacro09037 Vaccinium macrocarpon HOM05D005255 ORTHO05D006276 3.5e-36 157.5 306 36.9
SMO364G0001 Selaginella moellendorffii HOM05D005255 ORTHO05D006276 4.6e-36 157.1 662 24.6
unitig_8.g3496 Utricularia gibba HOM05D005255 ORTHO05D006276 6.6e-35 153.3 405 33.3
RcHm_v2.0_Chr3g0484111 Rosa chinensis HOM05D005255 ORTHO05D006276 8.9e-32 142.9 94 68.1
FAN14G4897 Fragaria x ananassa HOM05D005255 ORTHO05D006276 4.6e-28 130.6 137 50.4
Lsat_1_v5_gn_8_83120 Lactuca sativa HOM05D005255 ORTHO05D006276 7.8e-28 129.8 184 40.8
TAR628G1157 Trochodendron aralioides HOM05D005255 ORTHO05D006276 1.1e-26 125.9 99 60.6
vmacro09036 Vaccinium macrocarpon HOM05D005255 ORTHO05D006276 8.1e-25 119.8 80 66.2
SEGI_13590 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 8.9e-24 116.3 128 42.2
Dinv30288 Davidia involucrata HOM05D007529 ORTHO05D007451 7.5e-23 113.2 91 61.5
RcHm_v2.0_Chr1g0374991 Rosa chinensis HOM05D005255 ORTHO05D006276 9.9e-23 112.8 69 72.5
Lsat_1_v5_gn_5_6521 Lactuca sativa HOM05D005255 ORTHO05D006276 1.6e-20 105.5 92 54.3
SEGI_39771 Sequoiadendron giganteum HOM05D005255 ORTHO05D006276 5.1e-19 100.5 124 39.5
Nitab4.5_0000826g0030 Nicotiana tabacum HOM05D005255 ORTHO05D006276 1.6e-17 95.5 60 68.3
SEGI_06354 Sequoiadendron giganteum HOM05D005255 ORTHO05D006276 2.1e-17 95.1 69 66.7
SEGI_33554 Sequoiadendron giganteum HOM05D002556 ORTHO05D003153 6.2e-17 93.6 266 27.1
TAR624G0532 Trochodendron aralioides HOM05D005255 ORTHO05D006276 5.8e-15 87.0 65 61.5
CAN.G1237.19 Capsicum annuum HOM05D005255 ORTHO05D006276 9.9e-15 86.3 63 66.7
Pp3c12_23820 Physcomitrium patens HOM05D005255 ORTHO05D006276 1.3e-14 85.9 75 50.7
Eucgr.L01602 Eucalyptus grandis HOM05D002556 ORTHO05D003153 5.4e-13 80.5 188 26.1
PSO447G0225 Papaver somniferum HOM05D002556 ORTHO05D003153 1.6e-12 79.0 230 25.7
Actinidia23440 Actinidia chinensis HOM05D002556 ORTHO05D003153 2.7e-12 78.2 201 25.9
Cfa015509 Carpinus fangiana HOM05D002556 ORTHO05D003153 2.7e-12 78.2 197 24.9
Haze_01041 Corylus avellana HOM05D002556 ORTHO05D003153 2.7e-12 78.2 196 25.5
Nitab4.5_0000295g0100 Nicotiana tabacum HOM05D002556 ORTHO05D003153 4.6e-12 77.4 175 29.7
VMungo1383G3406 Vigna mungo HOM05D002556 ORTHO05D003153 6.0e-12 77.0 200 26.5
PSO210G2558 Papaver somniferum HOM05D002556 ORTHO05D003153 7.8e-12 76.6 229 24.5
Zm00001eb417970 Zea mays HOM05D002556 ORTHO05D003153 7.8e-12 76.6 229 24.5
ClCG09G006520 Citrullus lanatus HOM05D002556 ORTHO05D003153 1.3e-11 75.9 193 25.9
CsaV3_7G028290 Cucumis sativus L. HOM05D002556 ORTHO05D003153 1.3e-11 75.9 194 26.3
MELO3C015893.2 Cucumis melo HOM05D002556 ORTHO05D003153 1.7e-11 75.5 194 26.8
CAN.G1006.25 Capsicum annuum HOM05D002556 ORTHO05D003153 2.3e-11 75.1 176 27.3
Glyma.03G208600 Glycine max HOM05D002556 ORTHO05D003153 3.0e-11 74.7 257 21.8
DCAR_024620 Daucus carota HOM05D002556 ORTHO05D003153 8.7e-11 73.2 242 26.0
Gohir.D08G080000 Gossypium hirsutum HOM05D002556 ORTHO05D003153 8.7e-11 73.2 248 23.8
Gorai.004G085000 Gossypium raimondii HOM05D002556 ORTHO05D003153 1.1e-10 72.8 248 23.8
Gohir.A08G071800 Gossypium hirsutum HOM05D002556 ORTHO05D003153 1.5e-10 72.4 248 24.2
Gorai.005G056800 Gossypium raimondii HOM05D002556 ORTHO05D003153 1.5e-10 72.4 198 28.3
arahy.Tifrunner.gnm1.ann1.CR3TYE Arachis hypogaea HOM05D002556 ORTHO05D003153 2.5e-10 71.6 196 25.0
Gohir.A02G045500 Gossypium hirsutum HOM05D002556 ORTHO05D003153 2.5e-10 71.6 198 27.3
ATR0706G247 Amborella trichopoda HOM05D002556 ORTHO05D003153 3.3e-10 71.2 224 25.0
arahy.Tifrunner.gnm1.ann1.I12U39 Arachis hypogaea HOM05D002556 ORTHO05D003153 3.3e-10 71.2 196 25.0
SalBow5G3083 Salvia bowleyana HOM05D002556 ORTHO05D003153 3.3e-10 71.2 198 25.3
SalBow5G3428 Salvia bowleyana HOM05D002556 ORTHO05D003153 3.3e-10 71.2 198 25.3
Rhsim01G0279800 Rhododendron simsii HOM05D002556 ORTHO05D003153 4.3e-10 70.9 212 24.5
HanXRQChr13g0410841 Helianthus annuus HOM05D002556 ORTHO05D003153 7.3e-10 70.1 279 23.7
Solyc01g067790.3 Solanum lycopersicum HOM05D002556 ORTHO05D003153 9.6e-10 69.7 306 21.6
Cpa.g.sc9.158 Carica papaya HOM05D002556 ORTHO05D003153 1.2e-09 69.3 318 22.6
BolSC21t60285H Brassica oleracea HOM05D005255 ORTHO05D021741 1.6e-09 68.9 85 37.6
AUR62042844 Chenopodium quinoa HOM05D002556 ORTHO05D003153 1.6e-09 68.9 192 24.0
SMO119G0101 Selaginella moellendorffii HOM05D002556 ORTHO05D003153 1.6e-09 68.9 247 23.1
Atru.chr5.1286 Acer truncatum HOM05D002556 ORTHO05D003153 2.1e-09 68.6 203 22.7
Sopen01g029750 Solanum pennellii HOM05D002556 ORTHO05D003153 2.1e-09 68.6 307 22.5
PGSC0003DMG400022845 Solanum tuberosum HOM05D002556 ORTHO05D003153 2.8e-09 68.2 194 23.2
Potri.014G135520 Populus trichocarpa HOM05D002556 ORTHO05D003153 3.6e-09 67.8 196 25.0
Thecc.01G289800 Theobroma cacao HOM05D002556 ORTHO05D003153 3.6e-09 67.8 199 24.1
CsaV3_6G005660 Cucumis sativus L. HOM05D002556 ORTHO05D003153 4.7e-09 67.4 230 22.2
Duzib212G1036 Durio zibethinus HOM05D002556 ORTHO05D003153 4.7e-09 67.4 198 25.3
BcaB04g19772 Brassica carinata HOM05D005255 ORTHO05D021741 4.0e-08 64.3 58 48.3
SMO364G0772 Selaginella moellendorffii HOM05D005255 ORTHO05D006276 9.0e-08 63.2 121 33.9
C03p67440 Brassica napus HOM05D005255 ORTHO05D021741 2.6e-07 61.6 49 53.1
FAN20G2016 Fragaria x ananassa HOM05D002556 ORTHO05D003153 4.4e-07 60.8 199 22.6
C03p67420 Brassica napus HOM05D005255 ORTHO05D021741 1.3e-06 59.3 53 47.2
AUR62040727 Chenopodium quinoa HOM05D002556 ORTHO05D003153 1.3e-06 59.3 220 22.3
MD03G1296700 Malus domestica HOM05D004995 ORTHO05D006034 4.9e-06 57.4 138 29.7
SEGI_38340 Sequoiadendron giganteum HOM05D004995 ORTHO05D006034 4.9e-06 57.4 138 26.8
Actinidia25841 Actinidia chinensis HOM05D004995 ORTHO05D006034 6.4e-06 57.0 138 27.5


User provided reference genes

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