Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.FPGW6Q Arachis hypogaea HOM05D004037 ORTHO05D004744 6.2e-194 680.6 351 100.0
arahy.Tifrunner.gnm1.ann1.X3ZCQR Arachis hypogaea HOM05D004037 ORTHO05D004744 5.3e-193 677.6 351 99.1
Glyma.07G060300 Glycine max HOM05D004037 ORTHO05D004744 4.8e-154 548.1 354 81.6
Lj3g0014190 Lotus japonicus HOM05D004037 ORTHO05D004744 7.0e-153 544.3 355 82.0
Glyma.16G028900 Glycine max HOM05D004037 ORTHO05D004744 4.5e-152 541.6 354 81.4
VMungo1383G1316 Vigna mungo HOM05D004037 ORTHO05D004744 2.9e-151 538.9 352 81.8
Phvul.001G003100 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 5.5e-150 534.6 354 80.2
Lalb_Chr10g0100171 Lupinus albus HOM05D004037 ORTHO05D004744 3.4e-147 525.4 355 77.2
Phvul.010G108900 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 3.4e-147 525.4 354 80.2
Ca_23565_v3 Cicer arietinum L. HOM05D004037 ORTHO05D004744 9.8e-147 523.9 354 78.2
TPR.G5068 Trifolium pratense HOM05D004037 ORTHO05D004744 1.8e-145 519.6 351 77.8
Medtr8g028145 Medicago truncatula HOM05D004037 ORTHO05D004744 7.0e-145 517.7 354 77.4
Psat4g089800 Pisum sativum HOM05D004037 ORTHO05D004744 1.8e-137 493.0 355 73.8
ClCG09G010780 Citrullus lanatus HOM05D004037 ORTHO05D004744 3.4e-131 472.2 335 73.7
MELO3C013171.2 Cucumis melo HOM05D004037 ORTHO05D004744 3.4e-131 472.2 307 78.5
Sed0007542 Sechium edule HOM05D004037 ORTHO05D004744 4.4e-131 471.9 310 77.1
CsaV3_7G021780 Cucumis sativus L. HOM05D004037 ORTHO05D004744 1.1e-129 467.2 315 77.1
MD15G1142500 Malus domestica HOM05D004037 ORTHO05D004744 7.0e-129 464.5 300 77.0
Ah.06g182910 Amaranthus hybridus HOM05D004037 ORTHO05D004744 9.2e-129 464.2 309 75.4
Prupe.6G152500 Prunus persica HOM05D004037 ORTHO05D004744 9.2e-129 464.2 309 75.1
COL.COLO4_19183 Corchorus olitorius HOM05D004037 ORTHO05D004744 1.2e-128 463.8 312 75.0
PGR042G3458 Punica granatum HOM05D004037 ORTHO05D004744 1.2e-128 463.8 325 72.3
Ah.04g165670 Amaranthus hybridus HOM05D004037 ORTHO05D004744 2.0e-128 463.0 304 74.7
Duzib093G0613 Durio zibethinus HOM05D004037 ORTHO05D004744 2.7e-128 462.6 305 72.8
CiPaw.01G202600 Carya illinoinensis HOM05D004037 ORTHO05D004744 3.5e-128 462.2 313 74.1
Sed0020358 Sechium edule HOM05D004037 ORTHO05D004744 6.0e-128 461.5 304 78.9
Ciclev10020914m.g Citrus clementina HOM05D004037 ORTHO05D004744 3.0e-127 459.1 354 70.1
Thecc.05G172500 Theobroma cacao HOM05D004037 ORTHO05D004744 3.9e-127 458.8 296 76.4
Gorai.007G347100 Gossypium raimondii HOM05D004037 ORTHO05D004744 8.6e-127 457.6 305 73.1
Thecc.01G117800 Theobroma cacao HOM05D004037 ORTHO05D004744 8.6e-127 457.6 315 72.7
GSVIVG01038260001 Vitis vinifera HOM05D004037 ORTHO05D004744 8.6e-127 457.6 337 69.7
QL10p064641 Quercus lobata HOM05D004037 ORTHO05D004744 1.9e-126 456.4 333 70.6
AUR62016240 Chenopodium quinoa HOM05D004037 ORTHO05D004744 3.3e-126 455.7 333 69.7
TAR636G3090 Trochodendron aralioides HOM05D004037 ORTHO05D004744 3.3e-126 455.7 317 71.9
Nn3g17600 Nelumbo nucifera HOM05D004037 ORTHO05D004744 7.3e-126 454.5 347 67.7
QL10p065764 Quercus lobata HOM05D004037 ORTHO05D004744 7.3e-126 454.5 333 70.3
THA.LOC104804380 Tarenaya hassleriana HOM05D004037 ORTHO05D004744 9.5e-126 454.1 356 69.1
TWI63G1426 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 9.5e-126 454.1 349 69.3
AUR62032781 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.2e-125 453.8 331 69.5
Gorai.001G202100 Gossypium raimondii HOM05D004037 ORTHO05D004744 1.2e-125 453.8 327 71.9
RcHm_v2.0_Chr2g0084421 Rosa chinensis HOM05D004037 ORTHO05D004744 1.2e-125 453.8 345 68.1
FAN19G0379 Fragaria x ananassa HOM05D004037 ORTHO05D004744 2.1e-125 453.0 307 73.9
HanXRQChr02g0032821 Helianthus annuus HOM05D004037 ORTHO05D004744 2.1e-125 453.0 350 66.9
Actinidia39245 Actinidia chinensis HOM05D004037 ORTHO05D004744 2.8e-125 452.6 346 68.5
FvH4_2g00280 Fragaria vesca HOM05D004037 ORTHO05D004744 3.6e-125 452.2 352 68.2
Prupe.7G270700 Prunus persica HOM05D004037 ORTHO05D004744 4.7e-125 451.8 282 79.1
ECA246G0926 Erigeron canadensis HOM05D004037 ORTHO05D004744 6.2e-125 451.4 347 66.3
Gohir.D07G181200 Gossypium hirsutum HOM05D004037 ORTHO05D004744 6.2e-125 451.4 327 71.6
AT3G59890 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 8.0e-125 451.1 330 71.2
Gohir.A07G173900 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.1e-124 450.7 305 73.4
Gohir.A11G301700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.1e-124 450.7 348 66.7
EL10Ac2g02395 Beta vulgaris HOM05D004037 ORTHO05D004744 1.8e-124 449.9 299 73.6
CANSAT01G0494 Cannabis sativa HOM05D004037 ORTHO05D004744 2.3e-124 449.5 284 79.2
Sc06g0007930 Simmondsia chinensis HOM05D004037 ORTHO05D004744 4.0e-124 448.7 304 72.4
Atru.chr12.1746 Acer truncatum HOM05D004037 ORTHO05D004744 6.8e-124 448.0 355 67.9
Hund23277 Selenicereus undatus HOM05D004037 ORTHO05D004744 8.9e-124 447.6 307 73.0
Aa31LG10G14130 Aethionema arabicum HOM05D004037 ORTHO05D004744 1.5e-123 446.8 356 66.9
FAN24G1991 Fragaria x ananassa HOM05D004037 ORTHO05D004744 1.5e-123 446.8 272 81.2
Hma1.2p1_0150F.1_g066850 Hydrangea macrophylla HOM05D004037 ORTHO05D004744 2.0e-123 446.4 339 66.4
Hund02101 Selenicereus undatus HOM05D004037 ORTHO05D004744 2.0e-123 446.4 299 74.2
Aqoxy2G03110 Aquilegia oxysepala HOM05D004037 ORTHO05D004744 3.4e-123 445.7 280 77.1
Manes.05G207900 Manihot esculenta HOM05D004037 ORTHO05D004744 3.4e-123 445.7 282 77.3
Sp4g26120 Schrenkiella parvula HOM05D004037 ORTHO05D004744 3.4e-123 445.7 310 72.9
TWI34G0723 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 3.4e-123 445.7 310 72.3
CARHR170220 Cardamine hirsuta HOM05D004037 ORTHO05D004744 9.8e-123 444.1 316 72.8
Actinidia14627 Actinidia chinensis HOM05D004037 ORTHO05D004744 1.7e-122 443.4 304 71.4
Haze_11114 Corylus avellana HOM05D004037 ORTHO05D004744 2.2e-122 443.0 312 74.7
Gohir.D11G316700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 2.9e-122 442.6 343 66.2
RcHm_v2.0_Chr2g0126841 Rosa chinensis HOM05D004037 ORTHO05D004744 3.7e-122 442.2 354 66.4
AL5G42050 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 4.9e-122 441.8 352 65.9
Carub.0004s2659 Capsella rubella HOM05D004037 ORTHO05D004744 4.9e-122 441.8 307 73.6
Carub.0005s2663 Capsella rubella HOM05D004037 ORTHO05D004744 1.1e-121 440.7 341 68.9
Gohir.D11G317300 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.1e-121 440.7 298 72.1
Duzib128G0968 Durio zibethinus HOM05D004037 ORTHO05D004744 1.4e-121 440.3 301 72.1
Thhalv10006083m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 1.4e-121 440.3 350 67.4
Migut.M01184 Erythranthe guttata HOM05D004037 ORTHO05D004744 1.9e-121 439.9 337 67.7
Thhalv10001534m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 1.9e-121 439.9 307 72.6
EL10Ac6g13735 Beta vulgaris HOM05D004037 ORTHO05D004744 2.4e-121 439.5 274 77.0
A04p33160 Brassica napus HOM05D004037 ORTHO05D004744 5.4e-121 438.3 307 72.6
Lsat_1_v5_gn_3_17660 Lactuca sativa HOM05D004037 ORTHO05D004744 5.4e-121 438.3 347 64.0
C03p29380 Brassica napus HOM05D004037 ORTHO05D004744 7.1e-121 438.0 342 67.3
AT2G44040 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 9.2e-121 437.6 311 71.4
A03p24640 Brassica napus HOM05D004037 ORTHO05D004744 9.2e-121 437.6 342 67.3
BraA03t11670Z Brassica rapa HOM05D004037 ORTHO05D004744 9.2e-121 437.6 342 67.3
CARHR139200 Cardamine hirsuta HOM05D004037 ORTHO05D004744 9.2e-121 437.6 303 72.9
BcaC01g05190 Brassica carinata HOM05D004037 ORTHO05D004744 1.2e-120 437.2 342 67.3
Cc03_g11000 Coffea canephora HOM05D004037 ORTHO05D004744 2.1e-120 436.4 325 68.3
PGSC0003DMG400028592 Solanum tuberosum HOM05D004037 ORTHO05D004744 3.5e-120 435.6 276 76.1
AL4G42910 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 6.0e-120 434.9 307 71.3
BolC3t15285H Brassica oleracea HOM05D004037 ORTHO05D004744 6.0e-120 434.9 342 67.0
BolC4t28586H Brassica oleracea HOM05D004037 ORTHO05D004744 6.0e-120 434.9 308 72.1
BraA04t18775Z Brassica rapa HOM05D004037 ORTHO05D004744 6.0e-120 434.9 308 72.4
Lju470A2T32 Lonicera japonica HOM05D004037 ORTHO05D004744 1.0e-119 434.1 335 66.9
MBI18_g24142_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 1.0e-119 434.1 288 72.9
Solyc01g098380.4 Solanum lycopersicum HOM05D004037 ORTHO05D004744 1.0e-119 434.1 276 76.1
Nitab4.5_0000245g0260 Nicotiana tabacum HOM05D004037 ORTHO05D004744 1.3e-119 433.7 304 72.4
Migut.M00539 Erythranthe guttata HOM05D004037 ORTHO05D004744 1.7e-119 433.3 337 67.1
C04p70860 Brassica napus HOM05D004037 ORTHO05D004744 3.0e-119 432.6 308 71.8
PSO541G3258 Papaver somniferum HOM05D004037 ORTHO05D004744 5.1e-119 431.8 365 61.6
BcaB06g29352 Brassica carinata HOM05D004037 ORTHO05D004744 8.6e-119 431.0 353 66.0
CAN.G134.227 Capsicum annuum HOM05D004037 ORTHO05D004744 8.6e-119 431.0 322 68.9
BcaB01g03335 Brassica carinata HOM05D004037 ORTHO05D004744 1.1e-118 430.6 342 65.8
DCAR_002599 Daucus carota HOM05D004037 ORTHO05D004744 1.1e-118 430.6 310 68.7
Aa31LG1G25710 Aethionema arabicum HOM05D004037 ORTHO05D004744 1.5e-118 430.3 303 70.6
vmacro05805 Vaccinium macrocarpon HOM05D004037 ORTHO05D004744 2.5e-118 429.5 272 76.8
PSO675G6334 Papaver somniferum HOM05D004037 ORTHO05D004744 4.3e-118 428.7 368 61.4
CDE02G2837 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 9.5e-118 427.6 313 69.0
Cpa.g.sc182.24 Carica papaya HOM05D004037 ORTHO05D004744 4.7e-117 425.2 312 69.6
HPP92_022643 Vanilla planifolia HOM05D004037 ORTHO05D004744 4.7e-117 425.2 275 71.6
Potri.017G001900 Populus trichocarpa HOM05D004037 ORTHO05D004744 1.1e-116 424.1 280 73.9
Oeu016121.2 Olea europaea HOM05D004037 ORTHO05D004744 1.4e-116 423.7 274 74.8
CDE05G0441 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 6.8e-116 421.4 272 74.6
AUR62032340 Chenopodium quinoa HOM05D004037 ORTHO05D004744 8.9e-116 421.0 283 74.6
AUR62028616 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.2e-115 420.6 285 73.7
Peaxi162Scf00071g00719 Petunia axillaris HOM05D004037 ORTHO05D004744 3.4e-115 419.1 265 76.6
ATR0743G110 Amborella trichopoda HOM05D004037 ORTHO05D004744 3.7e-114 415.6 279 71.7
Os02g0436400 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 8.3e-114 414.5 326 65.0
MSTRG.7308 Avicennia marina HOM05D004037 ORTHO05D004744 1.1e-113 414.1 330 65.8
Zm00001eb176170 Zea mays HOM05D004037 ORTHO05D004744 9.2e-113 411.0 288 69.4
PSO339G4618 Papaver somniferum HOM05D004037 ORTHO05D004744 2.1e-112 409.8 344 59.9
CSS0028639 Camellia sinensis var. sinensis HOM05D004037 ORTHO05D004744 1.3e-111 407.1 302 65.6
Potri.007G145900 Populus trichocarpa HOM05D004037 ORTHO05D004744 8.6e-111 404.4 279 69.9
BcaC02g07140 Brassica carinata HOM05D004037 ORTHO05D004744 1.9e-110 403.3 307 68.7
Os03g0245100 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 2.5e-110 402.9 285 66.7
Cfa008527 Carpinus fangiana HOM05D004037 ORTHO05D004744 7.3e-110 401.4 312 68.9
HanXRQChr05g0133541 Helianthus annuus HOM05D004037 ORTHO05D004744 7.3e-110 401.4 334 61.7
unitig_37.g12156 Utricularia gibba HOM05D004037 ORTHO05D004744 2.1e-109 399.8 330 64.2
PSO384G4791 Papaver somniferum HOM05D004037 ORTHO05D004744 2.4e-108 396.4 365 57.5
SalBow8G4021 Salvia bowleyana HOM05D004037 ORTHO05D004744 2.0e-107 393.3 315 64.4
Lj6C283G4 Lonicera japonica HOM05D004037 ORTHO05D004744 1.7e-106 390.2 342 62.6
Sabra17G0005900 Salix brachista HOM05D004037 ORTHO05D004744 1.1e-105 387.5 384 57.3
SGA_v2.0_scaffold22G09788 Striga asiatica HOM05D004037 ORTHO05D004744 1.6e-104 383.6 345 61.2
BcaB06g29511 Brassica carinata HOM05D004037 ORTHO05D004744 4.6e-104 382.1 301 66.4
Oeu050828.1 Olea europaea HOM05D004037 ORTHO05D004744 3.3e-102 375.9 306 63.1
Nn048s41912 Nelumbo nucifera HOM05D004037 ORTHO05D004744 5.6e-102 375.2 311 64.3
SEGI_29918 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 5.6e-102 375.2 308 61.7
SMO347G0499 Selaginella moellendorffii HOM05D004037 ORTHO05D004744 6.4e-98 361.7 275 64.7
CBR_g41668 Chara braunii HOM05D004037 ORTHO05D004744 3.9e-95 352.4 308 57.1
Pp3c15_7380 Physcomitrium patens HOM05D004037 ORTHO05D004744 6.6e-95 351.7 276 63.8
Sopen01g041950 Solanum pennellii HOM05D004037 ORTHO05D004744 2.1e-93 346.7 224 75.0
Peaxi162Scf00434g00730 Petunia axillaris HOM05D004037 ORTHO05D004744 1.9e-86 323.6 186 84.4
Dinv24475 Davidia involucrata HOM05D004037 ORTHO05D004744 4.9e-82 308.9 261 65.1
MCO16G413 Micromonas commoda HOM05D004037 ORTHO05D004744 1.6e-80 303.9 288 57.6
Mapoly0033s0134 Marchantia polymorpha HOM05D004037 ORTHO05D004744 3.9e-79 299.3 282 56.4
FAN20G0369 Fragaria x ananassa HOM05D004037 ORTHO05D004744 4.3e-78 295.8 183 80.9
Cre14.g627850 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 5.7e-78 295.4 343 47.5
PRCOL_00006631 Prasinoderma coloniale HOM05D004037 ORTHO05D004744 2.8e-77 293.1 274 52.2
Nitab4.5_0001165g0010 Nicotiana tabacum HOM05D004037 ORTHO05D004744 3.5e-72 276.2 215 67.4
Gohir.D09G124433 Gossypium hirsutum HOM05D004037 ORTHO05D004744 2.1e-64 250.4 239 59.4
Peaxi162Scf00434g00733 Petunia axillaris HOM05D004037 ORTHO05D004744 5.1e-63 245.7 218 61.0
Peaxi162Scf00434g00740 Petunia axillaris HOM05D004037 ORTHO05D004744 1.5e-62 244.2 174 73.0
Gorai.006G143300 Gossypium raimondii HOM05D004037 ORTHO05D004744 1.4e-57 227.6 220 59.1
Actinidia11426 Actinidia chinensis HOM05D004037 ORTHO05D004744 4.2e-57 226.1 312 44.2
Nn048s41913 Nelumbo nucifera HOM05D004037 ORTHO05D004744 9.7e-54 214.9 123 82.1
Zm00001eb398800 Zea mays HOM05D004037 ORTHO05D004744 9.1e-52 208.4 197 53.3
BcaB01g03344 Brassica carinata HOM05D004037 ORTHO05D004744 3.2e-49 199.9 319 43.3
Lsat_1_v5_gn_9_123180 Lactuca sativa HOM05D002510 ORTHO05D007210 5.2e-47 192.6 175 58.3
AagrBONN_evm.TU.Sc2ySwM_368.1842 Anthoceros agrestis HOM05D004037 ORTHO05D004744 2.8e-45 186.8 182 53.8
AagrBONN_evm.TU.Sc2ySwM_368.1728 Anthoceros agrestis HOM05D004037 ORTHO05D004744 1.4e-36 157.9 138 59.4
FvH4_2g00640 Fragaria vesca HOM05D004037 ORTHO05D004744 3.1e-36 156.8 90 81.1
PSO451G0001 Papaver somniferum HOM05D004037 ORTHO05D004744 1.4e-31 141.4 77 84.4
Cre16.g656300 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 6.3e-29 132.5 280 31.1
MD02G1000400 Malus domestica HOM05D004037 ORTHO05D004744 6.6e-26 122.5 89 69.7
MBI01_g38182_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 8.6e-26 122.1 75 80.0
RhsimUnG0159300 Rhododendron simsii HOM05D004037 ORTHO05D004744 4.7e-24 116.3 148 50.7
Peaxi162Scf00609g00310 Petunia axillaris HOM05D004037 ORTHO05D019316 1.2e-22 111.7 66 84.8
AagrBONN_evm.TU.Sc2ySwM_152.2 Anthoceros agrestis HOM05D004037 ORTHO05D004744 1.5e-22 111.3 164 40.9
ATR0716G071 Amborella trichopoda HOM05D004037 ORTHO05D004744 3.5e-19 100.1 66 78.8
AagrBONN_evm.TU.Sc2ySwM_344.5552 Anthoceros agrestis HOM05D004037 ORTHO05D004744 4.7e-16 89.7 83 55.4
AUR62041665 Chenopodium quinoa HOM05D006904 ORTHO05D008439 2.5e-09 67.4 86 43.0
SEGI_36179 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 7.3e-09 65.9 179 28.5


User provided reference genes

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