Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.FMT7AB Arachis hypogaea HOM05D001280 ORTHO05D001125 2.3e-61 238.8 129 100.0
arahy.Tifrunner.gnm1.ann1.1T1RVQ Arachis hypogaea HOM05D001280 ORTHO05D001125 6.8e-37 157.5 194 56.7
arahy.Tifrunner.gnm1.ann1.AUY1K1 Arachis hypogaea HOM05D001280 ORTHO05D001125 2.0e-36 156.0 194 56.2
Lalb_Chr14g0369821 Lupinus albus HOM05D001280 ORTHO05D001125 2.4e-26 122.5 178 50.0
Lj5g0015161 Lotus japonicus HOM05D001280 ORTHO05D001125 5.0e-24 114.8 187 47.1
Ca_13412_v3 Cicer arietinum L. HOM05D001280 ORTHO05D001125 1.9e-23 112.8 190 43.7
Glyma.06G025000 Glycine max HOM05D001280 ORTHO05D001125 5.6e-23 111.3 156 51.3
CiPaw.08G065600 Carya illinoinensis HOM05D001280 ORTHO05D001125 9.5e-23 110.5 165 47.9
TPR.G34543 Trifolium pratense HOM05D001280 ORTHO05D001125 3.6e-22 108.6 163 47.9
Lj5g0026558 Lotus japonicus HOM05D001280 ORTHO05D001125 6.1e-22 107.8 164 47.0
Manes.18G014500 Manihot esculenta HOM05D001280 ORTHO05D001125 1.4e-21 106.7 180 43.3
Glyma.04G024900 Glycine max HOM05D001280 ORTHO05D001125 1.8e-21 106.3 162 48.1
Hma1.2p1_0023F.1_g015420 Hydrangea macrophylla HOM05D001280 ORTHO05D001125 3.0e-21 105.5 164 49.4
VMungo0647G1276 Vigna mungo HOM05D001280 ORTHO05D001125 3.0e-21 105.5 206 43.2
Cfa013939 Carpinus fangiana HOM05D001280 ORTHO05D001125 1.2e-20 103.6 167 45.5
TWI12G0248 Tripterygium wilfordii HOM05D001280 ORTHO05D001125 1.2e-20 103.6 171 44.4
arahy.Tifrunner.gnm1.ann1.29VQUK Arachis hypogaea HOM05D001280 ORTHO05D001125 7.5e-20 100.9 157 48.4
Phvul.001G007300 Phaseolus vulgaris HOM05D001280 ORTHO05D001125 9.8e-20 100.5 216 41.2
arahy.Tifrunner.gnm1.ann1.SYM4DV Arachis hypogaea HOM05D001280 ORTHO05D001125 1.3e-19 100.1 155 48.4
Prupe.1G366900 Prunus persica HOM05D001280 ORTHO05D001125 2.2e-19 99.4 172 44.8
TWI56G1108 Tripterygium wilfordii HOM05D001280 ORTHO05D001125 6.4e-19 97.8 177 42.9
Lalb_Chr23g0266171 Lupinus albus HOM05D001280 ORTHO05D001125 1.1e-18 97.1 126 48.4
Medtr3g113790 Medicago truncatula HOM05D001280 ORTHO05D001125 1.1e-18 97.1 164 45.1
Gohir.D06G000700 Gossypium hirsutum HOM05D001280 ORTHO05D001125 1.4e-18 96.7 192 41.7
Lalb_Chr22g0354361 Lupinus albus HOM05D001280 ORTHO05D001125 4.1e-18 95.1 182 44.5
Manes.05G148500 Manihot esculenta HOM05D001280 ORTHO05D001125 9.2e-18 94.0 178 43.3
TPR.G34333 Trifolium pratense HOM05D001280 ORTHO05D001125 1.2e-17 93.6 211 38.4
Ca_15486_v3 Cicer arietinum L. HOM05D001280 ORTHO05D001125 1.6e-17 93.2 167 43.7
Gorai.009G195300 Gossypium raimondii HOM05D001280 ORTHO05D001125 7.8e-17 90.9 171 42.1
Lalb_Chr24g0398731 Lupinus albus HOM05D001280 ORTHO05D001125 1.3e-16 90.1 169 40.2
Gohir.D05G190000 Gossypium hirsutum HOM05D001280 ORTHO05D001125 1.7e-16 89.7 173 42.2
Thecc.08G042700 Theobroma cacao HOM05D001280 ORTHO05D001125 1.7e-16 89.7 174 40.2
Duzib093G0009 Durio zibethinus HOM05D001280 ORTHO05D001125 2.3e-16 89.4 175 41.1
Gohir.A05G187100 Gossypium hirsutum HOM05D001280 ORTHO05D001125 3.0e-16 89.0 170 42.4
PGR031G1713 Punica granatum HOM05D001280 ORTHO05D001125 3.0e-16 89.0 171 42.1
Potri.005G237900 Populus trichocarpa HOM05D001280 ORTHO05D001125 8.6e-16 87.4 173 39.9
Lj4A26T47 Lonicera japonica HOM05D001280 ORTHO05D001125 1.1e-15 87.0 171 38.0
TWI36G1498 Tripterygium wilfordii HOM05D001280 ORTHO05D001125 3.3e-15 85.5 168 39.9
vmacro21721 Vaccinium macrocarpon HOM05D001280 ORTHO05D001125 3.3e-15 85.5 172 43.0
Actinidia15415 Actinidia chinensis HOM05D001280 ORTHO05D001125 4.3e-15 85.1 166 41.6
COL.COLO4_26160 Corchorus olitorius HOM05D001280 ORTHO05D001125 4.3e-15 85.1 171 39.2
Dinv39508 Davidia involucrata HOM05D001280 ORTHO05D001125 4.3e-15 85.1 168 43.5
Dinv31834 Davidia involucrata HOM05D001280 ORTHO05D001125 9.5e-15 84.0 165 42.4
Eucgr.F00600 Eucalyptus grandis HOM05D001280 ORTHO05D001125 9.5e-15 84.0 163 39.3
Phvul.009G016200 Phaseolus vulgaris HOM05D001280 ORTHO05D001125 1.2e-14 83.6 151 39.7
FvH4_2g38590 Fragaria vesca HOM05D001280 ORTHO05D001125 1.6e-14 83.2 172 41.9
Gohir.A06G004900 Gossypium hirsutum HOM05D001280 ORTHO05D001125 1.6e-14 83.2 186 38.7
Thhalv10003251m.g Eutrema salsugineum HOM05D001280 ORTHO05D001125 2.1e-14 82.8 171 40.9
Psat5g013400 Pisum sativum HOM05D001280 ORTHO05D001125 2.8e-14 82.4 164 40.9
Glyma.17G257500 Glycine max HOM05D001280 ORTHO05D001125 3.6e-14 82.0 196 39.8
Potri.002G023500 Populus trichocarpa HOM05D001280 ORTHO05D001125 3.6e-14 82.0 165 40.0
DCAR_017473 Daucus carota HOM05D001280 ORTHO05D001125 4.7e-14 81.6 167 39.5
MD15G1013400 Malus domestica HOM05D001280 ORTHO05D001125 4.7e-14 81.6 175 40.6
Rhsim06G0022100 Rhododendron simsii HOM05D001280 ORTHO05D001125 4.7e-14 81.6 171 42.1
GSVIVG01009889001 Vitis vinifera HOM05D001280 ORTHO05D001125 6.2e-14 81.3 174 38.5
FAN15G0334 Fragaria x ananassa HOM05D001280 ORTHO05D001125 1.1e-13 80.5 171 39.8
FAN27G0917 Fragaria x ananassa HOM05D001280 ORTHO05D001125 1.4e-13 80.1 171 39.8
RcHm_v2.0_Chr6g0302701 Rosa chinensis HOM05D001280 ORTHO05D001125 3.1e-13 79.0 173 38.7
AL8G18750 Arabidopsis lyrata HOM05D001280 ORTHO05D001125 8.9e-13 77.4 171 36.8
Ciclev10001859m.g Citrus clementina HOM05D001280 ORTHO05D001125 8.9e-13 77.4 200 33.5
Nn6g32367 Nelumbo nucifera HOM05D001280 ORTHO05D001125 8.9e-13 77.4 177 37.3
AUR62035744 Chenopodium quinoa HOM05D001280 ORTHO05D001125 1.2e-12 77.0 138 45.7
HanXRQChr14g0430251 Helianthus annuus HOM05D001280 ORTHO05D001125 1.5e-12 76.6 143 40.6
Psat6g003840 Pisum sativum HOM05D001280 ORTHO05D001125 1.5e-12 76.6 213 35.7
Cc10_g01780 Coffea canephora HOM05D001280 ORTHO05D001125 2.0e-12 76.3 168 41.7
BcaC02g10770 Brassica carinata HOM05D001280 ORTHO05D001125 3.4e-12 75.5 168 38.7
C04p25310 Brassica napus HOM05D001280 ORTHO05D001125 3.4e-12 75.5 168 38.7
BolC4t24036H Brassica oleracea HOM05D001280 ORTHO05D001125 3.4e-12 75.5 168 38.7
PSO541G1445 Papaver somniferum HOM05D001280 ORTHO05D001125 3.4e-12 75.5 184 35.3
Duzib116G0879 Durio zibethinus HOM05D001280 ORTHO05D001125 4.4e-12 75.1 172 38.4
PSO675G5117 Papaver somniferum HOM05D001280 ORTHO05D001125 4.4e-12 75.1 187 34.8
THA.LOC104806889 Tarenaya hassleriana HOM05D001280 ORTHO05D001125 4.4e-12 75.1 164 39.0
Sp2g06930 Schrenkiella parvula HOM05D001280 ORTHO05D001125 5.8e-12 74.7 174 37.4
SpUn0014_0080 Schrenkiella parvula HOM05D001280 ORTHO05D001125 5.8e-12 74.7 174 37.4
SpUn0077_0010 Schrenkiella parvula HOM05D001280 ORTHO05D001125 5.8e-12 74.7 174 37.4
CSS0016407 Camellia sinensis var. sinensis HOM05D001280 ORTHO05D001125 9.8e-12 73.9 182 37.4
Medtr1g024930 Medicago truncatula HOM05D001280 ORTHO05D001125 1.3e-11 73.6 216 35.2
A06p48290 Brassica napus HOM05D001280 ORTHO05D001125 1.7e-11 73.2 166 38.0
BraA06t27698Z Brassica rapa HOM05D001280 ORTHO05D001125 1.7e-11 73.2 166 38.0
Duzib041G0626 Durio zibethinus HOM05D001280 ORTHO05D001125 1.7e-11 73.2 176 34.7
Gorai.010G005100 Gossypium raimondii HOM05D001280 ORTHO05D001125 2.9e-11 72.4 195 34.4
MD08G1013900 Malus domestica HOM05D001280 ORTHO05D001125 2.9e-11 72.4 42 85.7
Glyma.14G218400 Glycine max HOM05D001280 ORTHO05D001125 3.7e-11 72.0 51 70.6
HanXRQChr04g0106731 Helianthus annuus HOM05D001280 ORTHO05D001125 3.7e-11 72.0 141 38.3
Haze_22622 Corylus avellana HOM05D001280 ORTHO05D001125 6.4e-11 71.2 169 36.7
BcaC06g31754 Brassica carinata HOM05D001280 ORTHO05D001125 8.3e-11 70.9 168 37.5
Sc15g0005050 Simmondsia chinensis HOM05D001280 ORTHO05D001125 8.3e-11 70.9 191 33.5
THA.LOC104813195 Tarenaya hassleriana HOM05D001280 ORTHO05D001125 1.9e-10 69.7 183 36.1
TAR381G1524 Trochodendron aralioides HOM05D001280 ORTHO05D001125 2.4e-10 69.3 155 38.7
Sed0003458 Sechium edule HOM05D001280 ORTHO05D001125 4.1e-10 68.6 187 34.8
TAR628G1414 Trochodendron aralioides HOM05D001280 ORTHO05D001125 4.1e-10 68.6 186 35.5
ClCG05G018340 Citrullus lanatus HOM05D001280 ORTHO05D001125 5.4e-10 68.2 205 33.7
Aa31LG9G12640 Aethionema arabicum HOM05D001280 ORTHO05D001125 7.0e-10 67.8 192 34.9
EL10Ac1g02287 Beta vulgaris HOM05D001280 ORTHO05D001125 9.2e-10 67.4 197 34.0
Sed0019508 Sechium edule HOM05D001280 ORTHO05D001125 9.2e-10 67.4 190 33.2
Migut.C00806 Erythranthe guttata HOM05D001280 ORTHO05D001125 1.6e-09 66.6 160 36.9
FAN20G0480 Fragaria x ananassa HOM05D001280 ORTHO05D001125 2.0e-09 66.2 159 38.4
PGR083G1832 Punica granatum HOM05D001280 ORTHO05D001125 2.0e-09 66.2 111 41.4
Cpa.g.sc1059.5 Carica papaya HOM05D001280 ORTHO05D001125 3.5e-09 65.5 152 36.2
CARHR181820 Cardamine hirsuta HOM05D001280 ORTHO05D001125 6.0e-09 64.7 180 35.6
MBI05_g15345_MAGBIO Magnolia biondii HOM05D001280 ORTHO05D001125 6.0e-09 64.7 167 34.7
Ah.05g166730 Amaranthus hybridus HOM05D001280 ORTHO05D001125 7.8e-09 64.3 150 36.7
CsaV3_3G045780 Cucumis sativus L. HOM05D001280 ORTHO05D001125 1.3e-08 63.5 206 33.5
Atru.chr13.310 Acer truncatum HOM05D001280 ORTHO05D001125 3.0e-08 62.4 222 29.3
Aqoxy5G01771 Aquilegia oxysepala HOM05D001280 ORTHO05D001125 3.0e-08 62.4 153 35.9
MSTRG.1200 Avicennia marina HOM05D001280 ORTHO05D001125 3.0e-08 62.4 164 32.9
Nitab4.5_0001540g0060 Nicotiana tabacum HOM05D001280 ORTHO05D001125 3.0e-08 62.4 183 33.3
Sabra02G0019100 Salix brachista HOM05D001280 ORTHO05D001125 3.0e-08 62.4 172 36.6
Sabra05G0183900 Salix brachista HOM05D001280 ORTHO05D001125 3.0e-08 62.4 226 29.2
Hund24106 Selenicereus undatus HOM05D001280 ORTHO05D001125 3.0e-08 62.4 184 34.8
CANSAT25G0382 Cannabis sativa HOM05D001280 ORTHO05D001125 3.9e-08 62.0 211 31.8
Ah.11g039090 Amaranthus hybridus HOM05D001280 ORTHO05D001125 5.0e-08 61.6 217 29.5
CiPaw.07G151200 Carya illinoinensis HOM05D001280 ORTHO05D001125 5.0e-08 61.6 173 33.5
Migut.N03154 Erythranthe guttata HOM05D001280 ORTHO05D001125 6.6e-08 61.2 172 33.1
Carub.0008s0646 Capsella rubella HOM05D001280 ORTHO05D001125 8.6e-08 60.8 176 33.0
Migut.O00764 Erythranthe guttata HOM05D001280 ORTHO05D001125 1.9e-07 59.7 166 32.5
MSTRG.25240 Avicennia marina HOM05D001280 ORTHO05D001125 2.5e-07 59.3 159 31.4
CSS0036384 Camellia sinensis var. sinensis HOM05D001280 ORTHO05D001125 2.5e-07 59.3 177 36.7
Nitab4.5_0000192g0080 Nicotiana tabacum HOM05D001280 ORTHO05D001125 3.3e-07 58.9 165 32.1
ECA233G2818 Erigeron canadensis HOM05D001280 ORTHO05D001125 4.3e-07 58.5 180 34.4
Nitab4.5_0002950g0030 Nicotiana tabacum HOM05D001280 ORTHO05D001125 4.3e-07 58.5 164 35.4
CSS0015407 Camellia sinensis var. sinensis HOM05D001280 ORTHO05D001125 5.6e-07 58.2 179 36.3
Manes.05G148550 Manihot esculenta HOM05D001280 ORTHO05D001125 7.3e-07 57.8 146 33.6
THA.LOC104813790 Tarenaya hassleriana HOM05D001280 ORTHO05D001125 7.3e-07 57.8 189 33.9
DCAR_013861 Daucus carota HOM05D001280 ORTHO05D001125 9.5e-07 57.4 32 78.1
Sc02g0008540 Simmondsia chinensis HOM05D001280 ORTHO05D001125 1.2e-06 57.0 194 32.0
Lsat_1_v5_gn_2_8620 Lactuca sativa HOM05D001280 ORTHO05D001125 2.1e-06 56.2 46 58.7
MELO3C003758.2 Cucumis melo HOM05D001280 ORTHO05D001125 2.8e-06 55.8 55 56.4
Peaxi162Scf00438g00624 Petunia axillaris HOM05D001280 ORTHO05D001125 3.6e-06 55.5 48 54.2
Nn5g29334 Nelumbo nucifera HOM05D001280 ORTHO05D001125 4.7e-06 55.1 89 43.8
AT5G42560 Arabidopsis thaliana HOM05D001280 ORTHO05D001125 8.1e-06 54.3 174 31.6
TAR376G1133 Trochodendron aralioides HOM05D001280 ORTHO05D001125 8.1e-06 54.3 171 32.2


User provided reference genes

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