Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.FKKB7G Arachis hypogaea HOM05D005269 ORTHO05D006429 4.1e-52 208.0 120 100.0
arahy.Tifrunner.gnm1.ann1.UWAC6K Arachis hypogaea HOM05D005269 ORTHO05D006429 3.6e-48 194.9 120 85.0
Glyma.05G124300 Glycine max HOM05D005269 ORTHO05D006429 3.1e-36 155.2 121 66.9
Psat7g094200 Pisum sativum HOM05D005269 ORTHO05D006429 1.9e-33 146.0 122 61.5
COL.COLO4_12968 Corchorus olitorius HOM05D005269 ORTHO05D006429 9.4e-33 143.7 125 60.0
Psat7g094160 Pisum sativum HOM05D005269 ORTHO05D006429 1.6e-32 142.9 116 61.2
CARHR009820 Cardamine hirsuta HOM05D005269 ORTHO05D006429 1.8e-31 139.4 127 56.7
THA.LOC104820303 Tarenaya hassleriana HOM05D005269 ORTHO05D006429 2.3e-31 139.0 125 56.0
ClCG01G005450 Citrullus lanatus HOM05D005269 ORTHO05D006429 6.7e-31 137.5 129 56.6
Gorai.007G246800 Gossypium raimondii HOM05D005269 ORTHO05D006429 2.0e-30 136.0 123 57.7
MELO3C005384.2 Cucumis melo HOM05D005269 ORTHO05D006429 2.6e-30 135.6 127 57.5
Eucgr.I00374 Eucalyptus grandis HOM05D005269 ORTHO05D006429 2.6e-30 135.6 124 56.5
Gohir.D11G234500 Gossypium hirsutum HOM05D005269 ORTHO05D006429 2.6e-30 135.6 123 56.9
Phvul.002G201100 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 2.6e-30 135.6 120 60.0
Gohir.A11G225900 Gossypium hirsutum HOM05D005269 ORTHO05D006429 3.3e-30 135.2 123 56.9
PGR004G2648 Punica granatum HOM05D005269 ORTHO05D006429 7.4e-30 134.0 124 58.1
Haze_00354 Corylus avellana HOM05D005269 ORTHO05D006429 1.3e-29 133.3 132 56.1
CsaV3_5G005690 Cucumis sativus L. HOM05D005269 ORTHO05D006429 1.3e-29 133.3 127 56.7
Potri.019G042900 Populus trichocarpa HOM05D005269 ORTHO05D006429 1.3e-29 133.3 123 57.7
Manes.09G130300 Manihot esculenta HOM05D005269 ORTHO05D006429 1.7e-29 132.9 129 61.2
Aa31LG1G5120 Aethionema arabicum HOM05D005269 ORTHO05D006429 2.2e-29 132.5 126 53.2
DCAR_009029 Daucus carota HOM05D005269 ORTHO05D006429 2.2e-29 132.5 126 54.0
Ca_18303_v3 Cicer arietinum L. HOM05D005269 ORTHO05D006429 3.7e-29 131.7 120 57.5
MD07G1311000 Malus domestica HOM05D005269 ORTHO05D006429 3.7e-29 131.7 128 55.5
Thecc.05G226600 Theobroma cacao HOM05D005269 ORTHO05D006429 3.7e-29 131.7 128 54.7
Gohir.A13G001000 Gossypium hirsutum HOM05D005269 ORTHO05D006429 4.8e-29 131.3 123 55.3
Prupe.2G330200 Prunus persica HOM05D005269 ORTHO05D006429 4.8e-29 131.3 120 58.3
Thecc.05G226200 Theobroma cacao HOM05D005269 ORTHO05D006429 4.8e-29 131.3 128 54.7
EL10Ac4g10063 Beta vulgaris HOM05D005269 ORTHO05D006429 8.2e-29 130.6 127 52.8
A06p06530 Brassica napus HOM05D005269 ORTHO05D006429 8.2e-29 130.6 126 54.8
CAN.G500.91 Capsicum annuum HOM05D005269 ORTHO05D006429 8.2e-29 130.6 120 55.8
Potri.013G076400 Populus trichocarpa HOM05D005269 ORTHO05D006429 8.2e-29 130.6 124 56.5
Solyc09g091450.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 8.2e-29 130.6 123 54.5
AT1G09815 Arabidopsis thaliana HOM05D005269 ORTHO05D006429 1.1e-28 130.2 126 54.0
Carub.0001s0919 Capsella rubella HOM05D005269 ORTHO05D006429 1.1e-28 130.2 126 54.8
BcaC05g24843 Brassica carinata HOM05D005269 ORTHO05D006429 1.4e-28 129.8 126 54.8
BolC5t29544H Brassica oleracea HOM05D005269 ORTHO05D006429 1.4e-28 129.8 126 54.8
Sabra19G0053500 Salix brachista HOM05D005269 ORTHO05D006429 1.4e-28 129.8 125 56.0
BraA06t23864Z Brassica rapa HOM05D005269 ORTHO05D006429 1.8e-28 129.4 126 54.0
Duzib128G1401 Durio zibethinus HOM05D005269 ORTHO05D006429 1.8e-28 129.4 128 53.9
Lj7A504G56 Lonicera japonica HOM05D005269 ORTHO05D006429 1.8e-28 129.4 122 61.5
Sp1g08440 Schrenkiella parvula HOM05D005269 ORTHO05D006429 1.8e-28 129.4 126 53.2
PGSC0003DMG400029616 Solanum tuberosum HOM05D005269 ORTHO05D006429 1.8e-28 129.4 123 54.5
AL1G20410 Arabidopsis lyrata HOM05D005269 ORTHO05D006429 2.4e-28 129.0 120 56.7
Ciclev10033086m.g Citrus clementina HOM05D005269 ORTHO05D006429 2.4e-28 129.0 121 57.9
Sopen09g034380 Solanum pennellii HOM05D005269 ORTHO05D006429 2.4e-28 129.0 123 53.7
CiPaw.05G211300 Carya illinoinensis HOM05D005269 ORTHO05D006429 3.1e-28 128.6 126 53.2
Ah.04g159550 Amaranthus hybridus HOM05D005269 ORTHO05D006429 4.1e-28 128.3 125 52.0
Thhalv10009118m.g Eutrema salsugineum HOM05D005269 ORTHO05D006429 4.1e-28 128.3 126 54.8
Dinv17239 Davidia involucrata HOM05D005269 ORTHO05D006429 5.3e-28 127.9 133 51.9
Phvul.002G201200 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 5.3e-28 127.9 120 56.7
Cpa.g.sc43.150 Carica papaya HOM05D005269 ORTHO05D006429 7.0e-28 127.5 129 53.5
Peaxi162Scf00047g01229 Petunia axillaris HOM05D005269 ORTHO05D006429 1.2e-27 126.7 122 55.7
Cfa016104 Carpinus fangiana HOM05D005269 ORTHO05D006429 1.6e-27 126.3 140 52.9
Eucgr.L00611 Eucalyptus grandis HOM05D005269 ORTHO05D006429 1.6e-27 126.3 124 54.8
RcHm_v2.0_Chr2g0117101 Rosa chinensis HOM05D005269 ORTHO05D006429 2.6e-27 125.6 118 55.1
Sc16g0010860 Simmondsia chinensis HOM05D005269 ORTHO05D006429 2.6e-27 125.6 123 56.9
Atru.chr12.1824 Acer truncatum HOM05D005269 ORTHO05D006429 7.7e-27 124.0 125 56.0
Cc11_g00500 Coffea canephora HOM05D005269 ORTHO05D006429 7.7e-27 124.0 128 50.0
FvH4_1g22780 Fragaria vesca HOM05D005269 ORTHO05D006429 7.7e-27 124.0 118 52.5
Hma1.2p1_0419F.1_g149570 Hydrangea macrophylla HOM05D005269 ORTHO05D006429 7.7e-27 124.0 135 52.6
AUR62000236 Chenopodium quinoa HOM05D005269 ORTHO05D006429 1.3e-26 123.2 125 52.0
TWI32G0228 Tripterygium wilfordii HOM05D005269 ORTHO05D006429 1.3e-26 123.2 141 51.8
Medtr4g094465 Medicago truncatula HOM05D005269 ORTHO05D006429 1.7e-26 122.9 123 55.3
Sed0009591 Sechium edule HOM05D005269 ORTHO05D006429 1.7e-26 122.9 129 51.9
AUR62006583 Chenopodium quinoa HOM05D005269 ORTHO05D006429 2.9e-26 122.1 125 52.0
Actinidia33802 Actinidia chinensis HOM05D005269 ORTHO05D006429 3.8e-26 121.7 117 52.1
Lj4g0020860 Lotus japonicus HOM05D005269 ORTHO05D006429 3.8e-26 121.7 117 58.1
Thecc.05G226400 Theobroma cacao HOM05D005269 ORTHO05D006429 3.8e-26 121.7 128 52.3
MSTRG.4345 Avicennia marina HOM05D005269 ORTHO05D006429 6.5e-26 120.9 120 51.7
Sabra13G0065600 Salix brachista HOM05D005269 ORTHO05D006429 6.5e-26 120.9 123 53.7
TAR374G1160 Trochodendron aralioides HOM05D005269 ORTHO05D006429 6.5e-26 120.9 124 52.4
Ah.06g194960 Amaranthus hybridus HOM05D005269 ORTHO05D006429 1.1e-25 120.2 120 51.7
Oeu034712.1 Olea europaea HOM05D005269 ORTHO05D006429 1.1e-25 120.2 129 51.2
Peaxi162Scf00536g00089 Petunia axillaris HOM05D005269 ORTHO05D006429 1.1e-25 120.2 116 51.7
FAN19G2412 Fragaria x ananassa HOM05D005269 ORTHO05D006429 1.5e-25 119.8 118 50.8
Gorai.013G185000 Gossypium raimondii HOM05D005269 ORTHO05D006429 1.5e-25 119.8 121 53.7
FAN26G3478 Fragaria x ananassa HOM05D005269 ORTHO05D006429 1.9e-25 119.4 118 50.0
Glyma.08G079500 Glycine max HOM05D005269 ORTHO05D006429 2.5e-25 119.0 110 58.2
Lalb_Chr07g0189121 Lupinus albus HOM05D005269 ORTHO05D006429 2.5e-25 119.0 122 55.7
VMungo0251G2623 Vigna mungo HOM05D005269 ORTHO05D006429 3.2e-25 118.6 120 55.0
FAN23G2200 Fragaria x ananassa HOM05D005269 ORTHO05D006429 4.2e-25 118.2 113 52.2
Migut.H00004 Erythranthe guttata HOM05D005269 ORTHO05D006429 1.6e-24 116.3 126 56.3
Hund07408 Selenicereus undatus HOM05D005269 ORTHO05D006429 1.6e-24 116.3 124 48.4
ATR0568G075 Amborella trichopoda HOM05D005269 ORTHO05D006429 2.7e-24 115.5 123 48.0
FAN28G1075 Fragaria x ananassa HOM05D005269 ORTHO05D006429 2.7e-24 115.5 118 49.2
Sed0022400 Sechium edule HOM05D005269 ORTHO05D006429 2.7e-24 115.5 120 51.7
Nn1g09278 Nelumbo nucifera HOM05D005269 ORTHO05D006429 3.6e-24 115.2 122 47.5
MBI04_g30790_MAGBIO Magnolia biondii HOM05D005269 ORTHO05D006429 8.0e-24 114.0 119 51.3
Aqoxy6G02173 Aquilegia oxysepala HOM05D005269 ORTHO05D006429 2.3e-23 112.5 83 63.9
Gohir.D13G162800 Gossypium hirsutum HOM05D005269 ORTHO05D006429 2.3e-23 112.5 121 53.7
GSVIVG01024265001 Vitis vinifera HOM05D005269 ORTHO05D006429 2.3e-23 112.5 122 50.0
Nitab4.5_0001769g0050 Nicotiana tabacum HOM05D005269 ORTHO05D006429 4.0e-23 111.7 124 47.6
SGA_v2.0_scaffold18G08210 Striga asiatica HOM05D005269 ORTHO05D006429 4.0e-23 111.7 121 47.9
ECA232G2798 Erigeron canadensis HOM05D005251 ORTHO05D006680 1.2e-22 110.2 121 55.4
PGSC0003DMG400019109 Solanum tuberosum HOM05D005269 ORTHO05D006429 1.5e-22 109.8 136 52.2
Nitab4.5_0001066g0040 Nicotiana tabacum HOM05D005269 ORTHO05D006429 2.0e-22 109.4 132 49.2
Rhsim09G0214100 Rhododendron simsii HOM05D005269 ORTHO05D006429 2.6e-22 109.0 133 43.6
TPR.G23807 Trifolium pratense HOM05D005269 ORTHO05D006429 3.3e-22 108.6 117 57.3
HanXRQChr17g0540921 Helianthus annuus HOM05D005269 ORTHO05D006429 4.4e-22 108.2 126 50.0
TAR629G0465 Trochodendron aralioides HOM05D005269 ORTHO05D006429 5.7e-22 107.8 124 47.6
unitig_52.g17685 Utricularia gibba HOM05D005269 ORTHO05D006429 5.7e-22 107.8 115 49.6
CDE02G3654 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 9.7e-22 107.1 120 46.7
CSS0034044 Camellia sinensis var. sinensis HOM05D005269 ORTHO05D006429 1.3e-21 106.7 116 47.4
CDE11G1263 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 1.3e-21 106.7 120 45.0
PSO063G4725 Papaver somniferum HOM05D005269 ORTHO05D006429 2.2e-21 105.9 122 51.6
CANSAT78G2182 Cannabis sativa HOM05D005269 ORTHO05D006429 4.8e-21 104.8 115 48.7
Lsat_1_v5_gn_9_46181 Lactuca sativa HOM05D005269 ORTHO05D006429 6.3e-21 104.4 128 48.4
PSO782G4777 Papaver somniferum HOM05D005269 ORTHO05D006429 6.3e-21 104.4 127 51.2
vmacro22190 Vaccinium macrocarpon HOM05D005269 ORTHO05D006429 8.3e-21 104.0 117 45.3
C05p07920 Brassica napus HOM05D005269 ORTHO05D006429 9.1e-20 100.5 65 69.2
CAN.G17.24 Capsicum annuum HOM05D005269 ORTHO05D006429 9.1e-20 100.5 129 45.7
Sopen05g032040 Solanum pennellii HOM05D005269 ORTHO05D006429 1.6e-19 99.8 134 46.3
Gohir.A13G157700 Gossypium hirsutum HOM05D005269 ORTHO05D006429 2.7e-19 99.0 114 49.1
Solyc05g053520.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 4.5e-19 98.2 134 46.3
Mapoly0002s0066 Marchantia polymorpha HOM05D005269 ORTHO05D006429 1.0e-18 97.1 130 41.5
HPP92_001933 Vanilla planifolia HOM05D005269 ORTHO05D006429 1.5e-17 93.2 131 41.2
Zm00001eb318480 Zea mays HOM05D005269 ORTHO05D006429 2.5e-17 92.4 131 41.2
Os09g0520100 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 3.6e-16 88.6 131 42.7
SEGI_20967 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 1.4e-15 86.7 82 50.0
Phvul.006G123900 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 3.0e-15 85.5 65 56.9
Glyma.15G135000 Glycine max HOM05D005269 ORTHO05D006429 4.0e-15 85.1 108 42.6
PRCOL_00003345 Prasinoderma coloniale HOM05D005269 ORTHO05D006429 1.2e-14 83.6 72 55.6
Pp3c4_21450 Physcomitrium patens HOM05D005269 ORTHO05D006429 2.6e-14 82.4 81 49.4
TPR.G31897 Trifolium pratense HOM05D005269 ORTHO05D006429 5.7e-14 81.3 64 60.9
Medtr4g094458 Medicago truncatula HOM05D005269 ORTHO05D006429 7.5e-14 80.9 66 57.6
Medtr1g105865 Medicago truncatula HOM05D005269 ORTHO05D006429 4.5e-11 71.6 63 54.0
SMO134G0019 Selaginella moellendorffii HOM05D001491 ORTHO05D001443 5.9e-11 71.2 68 47.1
AUR62032913 Chenopodium quinoa HOM05D005269 ORTHO05D006429 7.7e-11 70.9 55 58.2
SEGI_01057 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 1.7e-10 69.7 82 37.8
AagrBONN_evm.TU.Sc2ySwM_344.2125 Anthoceros agrestis HOM05D005269 ORTHO05D006429 1.1e-09 67.0 59 44.1
Actinidia04559 Actinidia chinensis HOM05D005269 ORTHO05D006429 1.9e-09 66.2 85 44.7
Cre06.g292950 Chlamydomonas reinhardtii HOM05D005269 ORTHO05D006429 3.3e-09 65.5 68 42.6
SEGI_08095 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 5.5e-09 64.7 66 40.9
CDE02G2358 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 1.6e-08 63.2 45 60.0
Phvul.006G123800 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 4.7e-08 61.6 84 42.9
Os08g0163300 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 6.1e-08 61.2 59 47.5
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 3.0e-07 58.9 49 57.1
Mapoly0080s0095 Marchantia polymorpha HOM05D005269 ORTHO05D006429 5.2e-07 58.2 65 40.0
MCO11G533 Micromonas commoda HOM05D005269 ORTHO05D006429 6.8e-07 57.8 73 42.5
Zm00001eb415390 Zea mays HOM05D005269 ORTHO05D006429 2.0e-06 56.2 55 47.3


User provided reference genes

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