Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.FJF7PC Arachis hypogaea HOM05D005374 ORTHO05D006534 1.4e-114 416.4 217 100.0
arahy.Tifrunner.gnm1.ann1.B0SCIB Arachis hypogaea HOM05D005374 ORTHO05D006534 2.4e-18 96.7 55 89.1
arahy.Tifrunner.gnm1.ann1.BM6K92 Arachis hypogaea HOM05D005374 ORTHO05D006534 2.4e-18 96.7 55 89.1
arahy.Tifrunner.gnm1.ann1.W15AHF Arachis hypogaea HOM05D005374 ORTHO05D006534 5.3e-18 95.5 55 89.1
arahy.Tifrunner.gnm1.ann1.Y4UVSP Arachis hypogaea HOM05D005374 ORTHO05D006534 5.3e-18 95.5 55 89.1
Glyma.01G154100 Glycine max HOM05D005374 ORTHO05D006534 5.3e-18 95.5 55 87.3
Glyma.11G090700 Glycine max HOM05D005374 ORTHO05D006534 5.3e-18 95.5 55 87.3
VMungo1215G0733 Vigna mungo HOM05D005374 ORTHO05D006534 5.9e-17 92.0 55 85.5
Lj2g0008244 Lotus japonicus HOM05D005374 ORTHO05D006534 7.7e-17 91.7 55 83.6
Phvul.002G121600 Phaseolus vulgaris HOM05D005374 ORTHO05D006534 1.0e-16 91.3 54 85.2
Ca_25046_v3 Cicer arietinum L. HOM05D005374 ORTHO05D006534 3.8e-16 89.4 55 80.0
Medtr5g025560 Medicago truncatula HOM05D005374 ORTHO05D006534 4.2e-15 85.9 55 80.0
TPR.G8985 Trifolium pratense HOM05D005374 ORTHO05D006534 4.2e-15 85.9 55 80.0
Actinidia14732 Actinidia chinensis HOM05D005374 ORTHO05D006534 5.5e-15 85.5 55 81.8
Lalb_Chr16g0380381 Lupinus albus HOM05D005374 ORTHO05D006534 5.5e-15 85.5 55 76.4
Atru.chr8.2626 Acer truncatum HOM05D005374 ORTHO05D006534 1.2e-14 84.3 55 80.0
Psat2g145440 Pisum sativum HOM05D005374 ORTHO05D006534 1.2e-14 84.3 55 78.2
CiPaw.11G074900 Carya illinoinensis HOM05D005374 ORTHO05D006534 2.7e-14 83.2 55 78.2
Hma1.2p1_1841F.1_g304960 Hydrangea macrophylla HOM05D005374 ORTHO05D006534 2.7e-14 83.2 55 78.2
QL12p004193 Quercus lobata HOM05D005374 ORTHO05D006534 3.6e-14 82.8 55 78.2
Thecc.03G319500 Theobroma cacao HOM05D005374 ORTHO05D006534 3.6e-14 82.8 55 78.2
CSS0021507 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 4.6e-14 82.4 55 78.2
Cpa.g.sc227.1 Carica papaya HOM05D005374 ORTHO05D006534 4.6e-14 82.4 55 78.2
Cfa012294 Carpinus fangiana HOM05D005374 ORTHO05D006534 6.1e-14 82.0 55 78.2
Haze_08435 Corylus avellana HOM05D005374 ORTHO05D006534 6.1e-14 82.0 55 78.2
Eucgr.E01146 Eucalyptus grandis HOM05D005374 ORTHO05D006534 6.1e-14 82.0 55 80.0
Gohir.D12G204500 Gossypium hirsutum HOM05D005374 ORTHO05D006534 6.1e-14 82.0 55 76.4
COL.COLO4_16753 Corchorus olitorius HOM05D005374 ORTHO05D006534 7.9e-14 81.6 55 78.2
Nn1g09345 Nelumbo nucifera HOM05D005374 ORTHO05D006534 7.9e-14 81.6 55 76.4
Duzib084G1112 Durio zibethinus HOM05D005374 ORTHO05D006534 1.0e-13 81.3 55 76.4
Duzib205G0577 Durio zibethinus HOM05D005374 ORTHO05D006534 1.4e-13 80.9 55 74.5
Solyc08g075380.3 Solanum lycopersicum HOM05D005374 ORTHO05D006534 1.4e-13 80.9 55 74.5
Sopen08g024010 Solanum pennellii HOM05D005374 ORTHO05D006534 1.4e-13 80.9 55 74.5
Gohir.A12G201800 Gossypium hirsutum HOM05D005374 ORTHO05D006534 1.8e-13 80.5 55 74.5
Gorai.008G219400 Gossypium raimondii HOM05D005374 ORTHO05D006534 1.8e-13 80.5 55 74.5
Nn7g37386 Nelumbo nucifera HOM05D005374 ORTHO05D006534 2.3e-13 80.1 55 74.5
SGA_v2.0_scaffold89G27377 Striga asiatica HOM05D005374 ORTHO05D006534 2.3e-13 80.1 55 72.7
vmacro14239 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 2.3e-13 80.1 55 76.4
Peaxi162Scf00193g00717 Petunia axillaris HOM05D005374 ORTHO05D006534 3.0e-13 79.7 54 74.1
Potri.004G236200 Populus trichocarpa HOM05D005374 ORTHO05D006534 3.0e-13 79.7 55 74.5
Dinv41805 Davidia involucrata HOM05D005374 ORTHO05D006534 3.9e-13 79.3 53 75.5
Manes.15G191300 Manihot esculenta HOM05D005374 ORTHO05D006534 3.9e-13 79.3 55 76.4
THA.LOC104811099 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 3.9e-13 79.3 55 74.5
Zm00001eb227600 Zea mays HOM05D005374 ORTHO05D006534 3.9e-13 79.3 55 70.9
Cc08_g05810 Coffea canephora HOM05D005374 ORTHO05D006534 5.1e-13 79.0 55 74.5
Nitab4.5_0000030g0530 Nicotiana tabacum HOM05D005374 ORTHO05D006534 5.1e-13 79.0 57 70.2
PSO541G3556 Papaver somniferum HOM05D005374 ORTHO05D006534 5.1e-13 79.0 55 74.5
Prupe.1G353600 Prunus persica HOM05D005374 ORTHO05D006534 5.1e-13 79.0 55 76.4
PGR031G1488 Punica granatum HOM05D005374 ORTHO05D006534 5.1e-13 79.0 55 72.7
PGSC0003DMG400001963 Solanum tuberosum HOM05D005374 ORTHO05D006534 5.1e-13 79.0 55 72.7
CSS0025693 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 6.7e-13 78.6 55 72.7
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 6.7e-13 78.6 55 70.9
Rhsim07G0140100 Rhododendron simsii HOM05D005374 ORTHO05D006534 6.7e-13 78.6 55 74.5
ATR0568G167 Amborella trichopoda HOM05D005374 ORTHO05D006534 8.8e-13 78.2 55 72.7
Oeu046780.1 Olea europaea HOM05D005374 ORTHO05D006534 8.8e-13 78.2 55 74.5
SalBow8G5130 Salvia bowleyana HOM05D005374 ORTHO05D006534 8.8e-13 78.2 53 75.5
HPP92_022746 Vanilla planifolia HOM05D005374 ORTHO05D006534 8.8e-13 78.2 55 74.5
Aa31LG9G7650 Aethionema arabicum HOM05D005374 ORTHO05D006534 1.1e-12 77.8 53 75.5
ClCG11G016070 Citrullus lanatus HOM05D005374 ORTHO05D006534 1.1e-12 77.8 55 70.9
MELO3C010523.2 Cucumis melo HOM05D005374 ORTHO05D006534 1.1e-12 77.8 55 70.9
CsaV3_4G027900 Cucumis sativus L. HOM05D005374 ORTHO05D006534 1.1e-12 77.8 55 70.9
Nitab4.5_0002244g0130 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.1e-12 77.8 55 72.7
Sabra01G0180500 Salix brachista HOM05D005374 ORTHO05D006534 1.1e-12 77.8 55 74.5
Oeu015544.1 Olea europaea HOM05D005374 ORTHO05D006534 1.5e-12 77.4 55 72.7
TWI18G0367 Tripterygium wilfordii HOM05D005374 ORTHO05D006534 1.5e-12 77.4 58 70.7
Ciclev10012169m.g Citrus clementina HOM05D005374 ORTHO05D006534 2.0e-12 77.0 55 70.9
Sed0016570 Sechium edule HOM05D005374 ORTHO05D006534 2.0e-12 77.0 55 69.1
TAR629G3354 Trochodendron aralioides HOM05D005374 ORTHO05D006534 2.0e-12 77.0 55 72.7
MSTRG.11863 Avicennia marina HOM05D005374 ORTHO05D006534 2.6e-12 76.6 53 73.6
Peaxi162Scf00045g00731 Petunia axillaris HOM05D005374 ORTHO05D006534 2.6e-12 76.6 53 71.7
CDE02G3607 Ceratophyllum demersum HOM05D005374 ORTHO05D006534 3.3e-12 76.3 55 70.9
Lj8A3T11 Lonicera japonica HOM05D005374 ORTHO05D006534 3.3e-12 76.3 55 70.9
GSVIVG01036874001 Vitis vinifera HOM05D005374 ORTHO05D006534 3.3e-12 76.3 53 73.6
arahy.Tifrunner.gnm1.ann1.125U9W Arachis hypogaea HOM05D005061 ORTHO05D006001 4.4e-12 75.9 55 69.1
Dinv37427 Davidia involucrata HOM05D005374 ORTHO05D006534 4.4e-12 75.9 55 72.7
Lsat_1_v5_gn_6_17221 Lactuca sativa HOM05D005374 ORTHO05D006534 4.4e-12 75.9 55 70.9
Aqoxy3G00850 Aquilegia oxysepala HOM05D005374 ORTHO05D006534 5.7e-12 75.5 55 69.1
HanXRQChr17g0558081 Helianthus annuus HOM05D005374 ORTHO05D006534 5.7e-12 75.5 55 70.9
PGSC0003DMG400018477 Solanum tuberosum HOM05D005374 ORTHO05D006534 5.7e-12 75.5 53 69.8
Sc22g0002240 Simmondsia chinensis HOM05D005374 ORTHO05D006534 9.7e-12 74.7 55 70.9
CAN.G998.19 Capsicum annuum HOM05D005374 ORTHO05D006534 1.3e-11 74.3 49 77.6
MBI04_g06277_MAGBIO Magnolia biondii HOM05D005374 ORTHO05D006534 1.3e-11 74.3 55 70.9
CAN.G884.8 Capsicum annuum HOM05D005374 ORTHO05D006534 1.7e-11 73.9 53 69.8
Sp2g10310 Schrenkiella parvula HOM05D005374 ORTHO05D006534 1.7e-11 73.9 53 67.9
MD15G1000900 Malus domestica HOM05D005374 ORTHO05D006534 2.2e-11 73.6 55 72.7
RcHm_v2.0_Chr6g0304341 Rosa chinensis HOM05D005374 ORTHO05D006534 2.2e-11 73.6 53 69.8
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 2.8e-11 73.2 55 69.1
Migut.A00528 Erythranthe guttata HOM05D005374 ORTHO05D006534 2.8e-11 73.2 52 73.1
Nitab4.5_0006438g0020 Nicotiana tabacum HOM05D005374 ORTHO05D006534 2.8e-11 73.2 53 69.8
unitig_747.g21918 Utricularia gibba HOM05D005374 ORTHO05D006534 4.8e-11 72.4 55 70.9
AL8G13440 Arabidopsis lyrata HOM05D005374 ORTHO05D006534 6.3e-11 72.0 53 66.0
Carub.0008s0275 Capsella rubella HOM05D005374 ORTHO05D006534 6.3e-11 72.0 53 66.0
Thhalv10000968m.g Eutrema salsugineum HOM05D005374 ORTHO05D006534 6.3e-11 72.0 53 66.0
TAR629G2486 Trochodendron aralioides HOM05D005374 ORTHO05D006534 6.3e-11 72.0 55 69.1
CARHR176710 Cardamine hirsuta HOM05D005374 ORTHO05D006534 8.2e-11 71.6 53 67.9
FvH4_2g37370 Fragaria vesca HOM05D005374 ORTHO05D006534 8.2e-11 71.6 57 70.2
FAN15G3753 Fragaria x ananassa HOM05D005374 ORTHO05D006534 8.2e-11 71.6 57 70.2
SEGI_04185 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 8.2e-11 71.6 53 64.2
Hund14303 Selenicereus undatus HOM05D005374 ORTHO05D006534 1.4e-10 70.9 55 67.3
DCAR_004533 Daucus carota HOM05D005374 ORTHO05D006534 1.8e-10 70.5 54 70.4
CSS0023834 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 3.1e-10 69.7 49 71.4
AUR62010482 Chenopodium quinoa HOM05D005374 ORTHO05D006534 3.1e-10 69.7 55 69.1
AUR62030411 Chenopodium quinoa HOM05D005374 ORTHO05D006534 3.1e-10 69.7 55 69.1
AT5G45360 Arabidopsis thaliana HOM05D005374 ORTHO05D006534 5.3e-10 68.9 53 62.3
EL10Ac5g12585 Beta vulgaris HOM05D005374 ORTHO05D006534 1.0e-08 64.7 55 63.6
DCAR_000721 Daucus carota HOM05D005374 ORTHO05D006534 1.0e-08 64.7 55 65.5
Mapoly0004s0051 Marchantia polymorpha HOM05D005374 ORTHO05D006534 1.0e-08 64.7 53 56.6
Ah.12g058460 Amaranthus hybridus HOM05D005374 ORTHO05D006534 5.0e-08 62.4 55 63.6
FAN27G3004 Fragaria x ananassa HOM05D005374 ORTHO05D006534 3.2e-07 59.7 83 47.0
Actinidia26790 Actinidia chinensis HOM05D005374 ORTHO05D006534 7.2e-07 58.5 39 76.9
Eucgr.G01888 Eucalyptus grandis HOM05D005374 ORTHO05D006534 2.1e-06 57.0 49 69.4
BcaB07g30892 Brassica carinata HOM05D005374 ORTHO05D006534 4.7e-06 55.8 44 56.8


User provided reference genes

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