Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.FJ4Y8F Arachis hypogaea HOM05D004992 ORTHO05D006004 1.7e-60 235.7 114 100.0
arahy.Tifrunner.gnm1.ann1.9Z1Z9Z Arachis hypogaea HOM05D004992 ORTHO05D006004 1.2e-58 229.6 114 97.4
Glyma.13G206400 Glycine max HOM05D004992 ORTHO05D006004 5.4e-38 161.0 116 74.1
Phvul.006G151000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.0e-36 156.8 115 73.0
VMungo0540G0931 Vigna mungo HOM05D004992 ORTHO05D006004 1.1e-35 153.3 115 71.3
Ca_00623_v3 Cicer arietinum L. HOM05D004992 ORTHO05D006004 9.5e-35 150.2 119 68.1
Phvul.003G077200 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.8e-33 146.0 116 66.4
Lalb_Chr18g0056231 Lupinus albus HOM05D004992 ORTHO05D006004 3.1e-33 145.2 126 61.1
Glyma.17G015100 Glycine max HOM05D004992 ORTHO05D006004 2.0e-32 142.5 116 66.4
Lj4g0012462 Lotus japonicus HOM05D004992 ORTHO05D006004 3.8e-31 138.3 111 66.7
Glyma.07G259100 Glycine max HOM05D004992 ORTHO05D006004 1.1e-30 136.7 116 63.8
Ciclev10016836m.g Citrus clementina HOM05D004992 ORTHO05D006004 5.4e-30 134.4 119 58.8
Medtr2g022820 Medicago truncatula HOM05D004992 ORTHO05D006004 5.4e-30 134.4 116 61.2
Thecc.06G217500 Theobroma cacao HOM05D004992 ORTHO05D006004 5.4e-30 134.4 119 58.8
Duzib235G0746 Durio zibethinus HOM05D004992 ORTHO05D006004 7.1e-30 134.0 119 60.5
Duzib192G0598 Durio zibethinus HOM05D004992 ORTHO05D006004 1.2e-29 133.3 119 58.8
Gohir.D06G153200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 2.7e-29 132.1 119 58.0
Gorai.010G179200 Gossypium raimondii HOM05D004992 ORTHO05D006004 2.7e-29 132.1 119 58.0
Gohir.A06G147400 Gossypium hirsutum HOM05D004992 ORTHO05D006004 1.0e-28 130.2 119 57.1
Potri.004G018600 Populus trichocarpa HOM05D004992 ORTHO05D006004 1.0e-28 130.2 119 58.8
QL05p074036 Quercus lobata HOM05D004992 ORTHO05D006004 1.3e-28 129.8 113 61.1
Prupe.4G023900 Prunus persica HOM05D004992 ORTHO05D006004 3.0e-28 128.6 122 55.7
Cfa000249 Carpinus fangiana HOM05D004992 ORTHO05D006004 5.1e-28 127.9 110 60.9
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 6.6e-28 127.5 110 60.9
VMungo1215G1625 Vigna mungo HOM05D004992 ORTHO05D006004 6.6e-28 127.5 116 57.8
COL.COLO4_31744 Corchorus olitorius HOM05D004992 ORTHO05D006004 8.6e-28 127.1 116 58.6
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 3.3e-27 125.2 119 54.6
CiPaw.10G069500 Carya illinoinensis HOM05D004992 ORTHO05D006004 4.3e-27 124.8 119 59.7
Cpa.g.sc198.27 Carica papaya HOM05D004992 ORTHO05D006004 4.7e-26 121.3 119 55.5
CiPaw.09G089400 Carya illinoinensis HOM05D004992 ORTHO05D006004 6.2e-26 120.9 114 56.1
Manes.17G037200 Manihot esculenta HOM05D004992 ORTHO05D006004 1.1e-25 120.2 112 55.4
TPR.G7639 Trifolium pratense HOM05D004992 ORTHO05D006004 1.1e-25 120.2 121 57.0
arahy.Tifrunner.gnm1.ann1.PC5S43 Arachis hypogaea HOM05D004992 ORTHO05D006004 1.4e-25 119.8 117 58.1
arahy.Tifrunner.gnm1.ann1.T879FL Arachis hypogaea HOM05D004992 ORTHO05D006004 6.9e-25 117.5 117 57.3
TWI38G1979 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 6.9e-25 117.5 114 56.1
GSVIVG01012656001 Vitis vinifera HOM05D004992 ORTHO05D006004 6.9e-25 117.5 121 52.9
arahy.Tifrunner.gnm1.ann1.Z4K8V6 Arachis hypogaea HOM05D004992 ORTHO05D006004 4.4e-24 114.8 117 56.4
FvH4_3g02450 Fragaria vesca HOM05D004992 ORTHO05D006004 1.7e-23 112.8 119 49.6
FAN21G0406 Fragaria x ananassa HOM05D004992 ORTHO05D006004 2.9e-23 112.1 119 48.7
FAN25G3450 Fragaria x ananassa HOM05D004992 ORTHO05D006004 3.8e-23 111.7 117 48.7
Sed0007059 Sechium edule HOM05D004992 ORTHO05D006004 4.9e-23 111.3 119 50.4
Potri.011G000400 Populus trichocarpa HOM05D004992 ORTHO05D006004 6.4e-23 110.9 119 52.1
RcHm_v2.0_Chr5g0003701 Rosa chinensis HOM05D004992 ORTHO05D006004 6.4e-23 110.9 119 51.3
TWI38G1613 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 1.1e-22 110.2 119 54.6
Dinv13873 Davidia involucrata HOM05D004992 ORTHO05D006004 2.4e-22 109.0 118 50.8
TPR.G37097 Trifolium pratense HOM05D004992 ORTHO05D006004 2.3e-20 102.4 107 57.0
MELO3C002469.2 Cucumis melo HOM05D004992 ORTHO05D006004 3.0e-20 102.1 117 47.0
ClCG01G022080 Citrullus lanatus HOM05D004992 ORTHO05D006004 3.9e-20 101.7 104 53.8
TPR.G37044 Trifolium pratense HOM05D004992 ORTHO05D006004 3.9e-20 101.7 111 55.0
CSS0017416 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 8.7e-20 100.5 122 47.5
CsaV3_1G010900 Cucumis sativus L. HOM05D004992 ORTHO05D006004 1.5e-19 99.8 116 47.4
ClCG03G004870 Citrullus lanatus HOM05D004992 ORTHO05D006004 2.5e-19 99.0 110 46.4
Manes.16G010000 Manihot esculenta HOM05D004992 ORTHO05D006004 9.6e-19 97.1 105 49.5
Sed0000784 Sechium edule HOM05D004992 ORTHO05D006004 9.6e-19 97.1 109 46.8
CANSAT56G2390 Cannabis sativa HOM05D004992 ORTHO05D006004 1.3e-18 96.7 125 47.2
MELO3C007381.2 Cucumis melo HOM05D004992 ORTHO05D006004 3.6e-18 95.1 104 50.0
Cc09_g01920 Coffea canephora HOM05D004992 ORTHO05D006004 4.0e-17 91.7 120 43.3
MD10G1317900 Malus domestica HOM05D004992 ORTHO05D006004 1.5e-16 89.7 127 43.3
Medtr4g131880 Medicago truncatula HOM05D004992 ORTHO05D006004 3.4e-16 88.6 107 53.3
TAR624G0245 Trochodendron aralioides HOM05D004992 ORTHO05D006004 4.5e-16 88.2 112 48.2
CSS0025190 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 9.9e-16 87.0 111 45.0
CSS0030561 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 9.9e-16 87.0 111 45.0
Solyc02g080360.1 Solanum lycopersicum HOM05D004992 ORTHO05D006004 1.7e-15 86.3 118 42.4
Nn1g07103 Nelumbo nucifera HOM05D004992 ORTHO05D006004 2.2e-15 85.9 113 46.0
Sed0025492 Sechium edule HOM05D004992 ORTHO05D006004 2.2e-15 85.9 121 42.1
BcaNung02246 Brassica carinata HOM05D004992 ORTHO05D006004 2.9e-15 85.5 108 43.5
Sopen02g025060 Solanum pennellii HOM05D004992 ORTHO05D006004 3.8e-15 85.1 118 42.4
CsaV3_6G049140 Cucumis sativus L. HOM05D004992 ORTHO05D006004 4.9e-15 84.7 93 51.6
Eucgr.D01305 Eucalyptus grandis HOM05D004992 ORTHO05D006004 4.9e-15 84.7 110 46.4
Eucgr.L03501 Eucalyptus grandis HOM05D004992 ORTHO05D006004 4.9e-15 84.7 110 46.4
Hma1.2p1_0091F.1_g046260 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 6.4e-15 84.3 120 42.5
THA.LOC104806295 Tarenaya hassleriana HOM05D004992 ORTHO05D006004 8.4e-15 84.0 105 46.7
AL7G32150 Arabidopsis lyrata HOM05D004992 ORTHO05D006004 1.4e-14 83.2 110 42.7
AT4G21780 Arabidopsis thaliana HOM05D004992 ORTHO05D006004 1.4e-14 83.2 109 43.1
PGR042G3122 Punica granatum HOM05D004992 ORTHO05D006004 1.4e-14 83.2 114 41.2
PGSC0003DMG400016488 Solanum tuberosum HOM05D004992 ORTHO05D006004 1.9e-14 82.8 116 41.4
CARHR228520 Cardamine hirsuta HOM05D004992 ORTHO05D006004 3.2e-14 82.0 120 41.7
Lsat_1_v5_gn_7_17380 Lactuca sativa HOM05D004992 ORTHO05D006004 4.2e-14 81.6 127 39.4
Oeu051218.1 Olea europaea HOM05D004992 ORTHO05D006004 5.4e-14 81.3 118 41.5
Potri.001G421100 Populus trichocarpa HOM05D004992 ORTHO05D006004 9.3e-14 80.5 112 42.9
Nitab4.5_0010096g0060 Nicotiana tabacum HOM05D004992 ORTHO05D006004 1.6e-13 79.7 112 39.3
Manes.03G126800 Manihot esculenta HOM05D004992 ORTHO05D006004 2.1e-13 79.3 119 41.2
Eucgr.F03448 Eucalyptus grandis HOM05D004992 ORTHO05D006004 2.7e-13 79.0 110 40.0
Thhalv10027254m.g Eutrema salsugineum HOM05D004992 ORTHO05D006004 2.7e-13 79.0 107 41.1
Prupe.4G209300 Prunus persica HOM05D004992 ORTHO05D006004 2.7e-13 79.0 107 46.7
Ciclev10009906m.g Citrus clementina HOM05D004992 ORTHO05D006004 7.9e-13 77.4 114 43.9
Potri.011G136500 Populus trichocarpa HOM05D004992 ORTHO05D006004 1.0e-12 77.0 106 44.3
Duzib268G1102 Durio zibethinus HOM05D004992 ORTHO05D006004 1.8e-12 76.3 112 41.1
Eucgr.E04090 Eucalyptus grandis HOM05D004992 ORTHO05D006004 2.3e-12 75.9 114 41.2
Gorai.002G086600 Gossypium raimondii HOM05D004992 ORTHO05D006004 5.1e-12 74.7 109 42.2
Gohir.A01G077800 Gossypium hirsutum HOM05D004992 ORTHO05D006004 6.7e-12 74.3 109 42.2
BcaC09g51203 Brassica carinata HOM05D004992 ORTHO05D006004 8.7e-12 73.9 111 38.7
C01p15800 Brassica napus HOM05D004992 ORTHO05D006004 8.7e-12 73.9 111 38.7
BolC1t01533H Brassica oleracea HOM05D004992 ORTHO05D006004 8.7e-12 73.9 111 38.7
Atru.chr10.2180 Acer truncatum HOM05D004992 ORTHO05D006004 2.5e-11 72.4 75 57.3
Carub.0007s1962 Capsella rubella HOM05D004992 ORTHO05D006004 3.3e-11 72.0 111 40.5
Lsat_1_v5_gn_9_94121 Lactuca sativa HOM05D004992 ORTHO05D006004 4.3e-11 71.6 114 35.1
Hma1.2p1_0813F.1_g222590 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 5.6e-11 71.2 109 45.9
Lalb_Chr17g0348391 Lupinus albus HOM05D004992 ORTHO05D006004 5.6e-11 71.2 114 36.8
Sp7g19950 Schrenkiella parvula HOM05D004992 ORTHO05D006004 5.6e-11 71.2 111 41.4
ATR0752G182 Amborella trichopoda HOM05D004992 ORTHO05D006004 9.6e-11 70.5 108 41.7
Rhsim04G0000900 Rhododendron simsii HOM05D004992 ORTHO05D006004 9.6e-11 70.5 102 41.2
Rhsim04G0002000 Rhododendron simsii HOM05D004992 ORTHO05D006004 9.6e-11 70.5 102 41.2
BraA01t01254Z Brassica rapa HOM05D004992 ORTHO05D006004 1.3e-10 70.1 111 39.6
MBI18_g24808_MAGBIO Magnolia biondii HOM05D004992 ORTHO05D006004 1.3e-10 70.1 107 42.1
Phvul.006G038900 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.3e-10 70.1 108 42.6
Thecc.07G043900 Theobroma cacao HOM05D004992 ORTHO05D006004 1.3e-10 70.1 114 37.7
EL10Ac8g20021 Beta vulgaris HOM05D004992 ORTHO05D006004 1.6e-10 69.7 128 38.3
Migut.M01784 Erythranthe guttata HOM05D004992 ORTHO05D006004 1.6e-10 69.7 108 36.1
PSO675G1893 Papaver somniferum HOM05D004992 ORTHO05D006004 1.6e-10 69.7 107 38.3
A01p13110 Brassica napus HOM05D004992 ORTHO05D006004 2.1e-10 69.3 110 38.2
Aa31LG6G3760 Aethionema arabicum HOM05D004992 ORTHO05D006004 2.8e-10 68.9 115 37.4
Sabra11G0122600 Salix brachista HOM05D004992 ORTHO05D006004 3.6e-10 68.6 106 41.5
TPR.G29123 Trifolium pratense HOM05D004992 ORTHO05D006004 6.2e-10 67.8 112 37.5
Peaxi162Scf00262g00051 Petunia axillaris HOM05D004992 ORTHO05D006004 1.1e-09 67.0 115 37.4
Sc17g0007220 Simmondsia chinensis HOM05D004992 ORTHO05D006004 1.4e-09 66.6 132 32.6
TWI38G2258 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 1.4e-09 66.6 102 35.3
arahy.Tifrunner.gnm1.ann1.R1VD00 Arachis hypogaea HOM05D004992 ORTHO05D006004 5.3e-09 64.7 111 32.4
Glyma.18G101800 Glycine max HOM05D004992 ORTHO05D006004 6.9e-09 64.3 111 36.9
SGA_v2.0_scaffold7G03870 Striga asiatica HOM05D004992 ORTHO05D006004 6.9e-09 64.3 108 38.9
Rhsim06G0215300 Rhododendron simsii HOM05D004992 ORTHO05D006004 9.0e-09 63.9 102 45.1
Ah.09g235060 Amaranthus hybridus HOM05D004992 ORTHO05D006004 1.2e-08 63.5 131 35.1
Manes.15G073800 Manihot esculenta HOM05D004992 ORTHO05D006004 1.2e-08 63.5 119 33.6
arahy.Tifrunner.gnm1.ann1.WBSQ2D Arachis hypogaea HOM05D004992 ORTHO05D006004 1.5e-08 63.2 111 31.5
Migut.M01366 Erythranthe guttata HOM05D004992 ORTHO05D006004 1.5e-08 63.2 108 36.1
Nitab4.5_0010096g0020 Nicotiana tabacum HOM05D000001 ORTHO05D009485 2.6e-08 62.4 112 40.2
DCAR_008138 Daucus carota HOM05D004992 ORTHO05D006004 4.5e-08 61.6 106 34.9
DCAR_022550 Daucus carota HOM05D004992 ORTHO05D006004 4.5e-08 61.6 109 38.5
Sed0003497 Sechium edule HOM05D004992 ORTHO05D006004 5.8e-08 61.2 111 39.6
MSTRG.12965 Avicennia marina HOM05D004992 ORTHO05D006004 7.6e-08 60.8 91 42.9
Sc16g0006270 Simmondsia chinensis HOM05D004992 ORTHO05D006004 1.7e-07 59.7 100 34.0
Glyma.14G025500 Glycine max HOM05D004992 ORTHO05D006004 6.4e-07 57.8 112 35.7
Gohir.D05G366700 Gossypium hirsutum HOM05D004992 ORTHO05D006004 1.1e-06 57.0 115 33.9
Gorai.009G425100 Gossypium raimondii HOM05D004992 ORTHO05D006004 1.1e-06 57.0 115 33.9
Glyma.02G289600 Glycine max HOM05D004992 ORTHO05D006004 1.4e-06 56.6 112 33.0
Phvul.008G265500 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 3.2e-06 55.5 112 32.1
Phvul.008G265000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 4.2e-06 55.1 103 31.1
Os03g0567100 Oryza sativa ssp. japonica HOM05D004992 ORTHO05D006004 9.3e-06 53.9 100 34.0


User provided reference genes

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