Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.FJ253B Arachis hypogaea HOM05D004740 ORTHO05D005991 2.0e-209 732.3 387 100.0
arahy.Tifrunner.gnm1.ann1.MX8U3M Arachis hypogaea HOM05D004740 ORTHO05D005991 9.3e-207 723.4 387 99.2
arahy.Tifrunner.gnm1.ann1.T9C115 Arachis hypogaea HOM05D004740 ORTHO05D005991 1.1e-204 716.5 387 98.4
arahy.Tifrunner.gnm1.ann1.C8ZV0S Arachis hypogaea HOM05D004740 ORTHO05D005991 4.3e-196 688.0 399 93.0
Lalb_Chr18g0051371 Lupinus albus HOM05D004740 ORTHO05D005991 1.7e-176 622.9 393 86.5
Lalb_Chr15g0083211 Lupinus albus HOM05D004740 ORTHO05D005991 2.2e-168 595.9 390 83.3
CARHR123500 Cardamine hirsuta HOM05D004740 ORTHO05D005991 7.2e-167 590.9 397 80.9
Sp4g12790 Schrenkiella parvula HOM05D004740 ORTHO05D005991 1.6e-166 589.7 401 80.8
Lj6g0008641 Lotus japonicus HOM05D004740 ORTHO05D005991 2.1e-166 589.3 370 86.2
Ca_15002_v3 Cicer arietinum L. HOM05D004740 ORTHO05D005991 6.1e-166 587.8 387 80.9
CiPaw.13G069800 Carya illinoinensis HOM05D004740 ORTHO05D005991 1.0e-165 587.0 387 82.2
Glyma.11G164500 Glycine max HOM05D004740 ORTHO05D005991 1.4e-165 586.6 364 86.8
Glyma.18G057700 Glycine max HOM05D004740 ORTHO05D005991 3.0e-165 585.5 364 86.5
Phvul.006G073300 Phaseolus vulgaris HOM05D004740 ORTHO05D005991 3.0e-165 585.5 393 81.9
AT2G30200 Arabidopsis thaliana HOM05D004740 ORTHO05D005991 6.7e-165 584.3 395 80.8
Medtr3g031380 Medicago truncatula HOM05D004740 ORTHO05D005991 1.5e-164 583.2 387 79.8
AL4G25030 Arabidopsis lyrata HOM05D004740 ORTHO05D005991 2.6e-164 582.4 368 84.0
Psat5g153440 Pisum sativum HOM05D004740 ORTHO05D005991 4.4e-164 581.6 388 79.9
QL01p026440 Quercus lobata HOM05D004740 ORTHO05D005991 5.7e-164 581.3 402 79.1
Peaxi162Scf00055g00057 Petunia axillaris HOM05D004740 ORTHO05D005991 7.4e-164 580.9 382 81.9
Gohir.A03G025700 Gossypium hirsutum HOM05D004740 ORTHO05D005991 1.7e-163 579.7 388 81.7
Nitab4.5_0002737g0070 Nicotiana tabacum HOM05D004740 ORTHO05D005991 2.2e-163 579.3 397 80.6
Nitab4.5_0001121g0110 Nicotiana tabacum HOM05D004740 ORTHO05D005991 3.7e-163 578.6 388 81.4
Thhalv10016751m.g Eutrema salsugineum HOM05D004740 ORTHO05D005991 4.8e-163 578.2 400 79.2
Solyc01g006980.4 Solanum lycopersicum HOM05D004740 ORTHO05D005991 8.2e-163 577.4 368 82.3
Gohir.D03G142800 Gossypium hirsutum HOM05D004740 ORTHO05D005991 1.1e-162 577.0 388 81.4
Sopen01g002970 Solanum pennellii HOM05D004740 ORTHO05D005991 1.1e-162 577.0 368 82.1
BcaB02g10307 Brassica carinata HOM05D004740 ORTHO05D005991 1.4e-162 576.6 392 79.6
Haze_24407 Corylus avellana HOM05D004740 ORTHO05D005991 1.4e-162 576.6 379 83.4
PGSC0003DMG400021362 Solanum tuberosum HOM05D004740 ORTHO05D005991 1.8e-162 576.2 368 82.3
Thecc.09G357100 Theobroma cacao HOM05D004740 ORTHO05D005991 1.8e-162 576.2 385 81.8
Duzib168G1324 Durio zibethinus HOM05D004740 ORTHO05D005991 2.4e-162 575.9 389 81.0
Carub.0004s1135 Capsella rubella HOM05D004740 ORTHO05D005991 3.1e-162 575.5 396 79.0
BolC3t14364H Brassica oleracea HOM05D004740 ORTHO05D005991 4.1e-162 575.1 384 81.5
Gorai.003G150000 Gossypium raimondii HOM05D004740 ORTHO05D005991 4.1e-162 575.1 369 84.3
C04p59110 Brassica napus HOM05D004740 ORTHO05D005991 1.2e-161 573.5 391 79.8
BolC4t27422H Brassica oleracea HOM05D004740 ORTHO05D005991 1.2e-161 573.5 391 79.8
COL.COLO4_11143 Corchorus olitorius HOM05D004740 ORTHO05D005991 1.5e-161 573.2 367 84.5
Aa31LG5G6500 Aethionema arabicum HOM05D004740 ORTHO05D005991 2.6e-161 572.4 402 78.9
BraA04t17832Z Brassica rapa HOM05D004740 ORTHO05D005991 3.4e-161 572.0 396 79.0
Dinv28694 Davidia involucrata HOM05D004740 ORTHO05D005991 4.5e-161 571.6 416 76.2
CSS0045632 Camellia sinensis var. sinensis HOM05D004740 ORTHO05D005991 7.7e-161 570.9 397 78.8
Ciclev10028558m.g Citrus clementina HOM05D004740 ORTHO05D005991 7.7e-161 570.9 407 75.9
RcHm_v2.0_Chr5g0071571 Rosa chinensis HOM05D004740 ORTHO05D005991 1.0e-160 570.5 384 79.4
BcaC02g08041 Brassica carinata HOM05D004740 ORTHO05D005991 1.3e-160 570.1 391 79.3
SalBow2G1640 Salvia bowleyana HOM05D004740 ORTHO05D005991 3.8e-160 568.5 404 77.7
MELO3C020514.2 Cucumis melo HOM05D004740 ORTHO05D005991 6.5e-160 567.8 366 82.0
FvH4_3g39690 Fragaria vesca HOM05D004740 ORTHO05D005991 8.5e-160 567.4 382 79.3
THA.LOC104826277 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 8.5e-160 567.4 369 82.4
vmacro02923 Vaccinium macrocarpon HOM05D004740 ORTHO05D005991 8.5e-160 567.4 391 79.8
PGR102G2346 Punica granatum HOM05D004740 ORTHO05D005991 1.1e-159 567.0 405 78.0
Rhsim13G0064700 Rhododendron simsii HOM05D004740 ORTHO05D005991 1.1e-159 567.0 393 79.6
VMungo0540G0639 Vigna mungo HOM05D004740 ORTHO05D005991 1.9e-159 566.2 364 84.1
CANSAT54G2578 Cannabis sativa HOM05D004740 ORTHO05D005991 2.5e-159 565.8 405 77.5
CsaV3_1G036540 Cucumis sativus L. HOM05D004740 ORTHO05D005991 2.5e-159 565.8 366 82.0
BcaB06g28350 Brassica carinata HOM05D004740 ORTHO05D005991 3.2e-159 565.5 394 77.9
TAR623G0659 Trochodendron aralioides HOM05D004740 ORTHO05D005991 7.2e-159 564.3 409 76.3
BraA05t20443Z Brassica rapa HOM05D004740 ORTHO05D005991 1.2e-158 563.5 395 77.7
Ah.15g096090 Amaranthus hybridus HOM05D004740 ORTHO05D005991 2.1e-158 562.8 379 79.4
BolC4t23568H Brassica oleracea HOM05D004740 ORTHO05D005991 2.1e-158 562.8 382 79.6
BcaC02g11103 Brassica carinata HOM05D004740 ORTHO05D005991 3.6e-158 562.0 381 79.3
A05p15240 Brassica napus HOM05D004740 ORTHO05D005991 3.6e-158 562.0 399 77.2
C04p20390 Brassica napus HOM05D004740 ORTHO05D005991 4.7e-158 561.6 382 80.4
Manes.18G127700 Manihot esculenta HOM05D004740 ORTHO05D005991 6.1e-158 561.2 402 76.1
MSTRG.17889 Avicennia marina HOM05D004740 ORTHO05D005991 1.0e-157 560.5 404 75.7
Cfa011772 Carpinus fangiana HOM05D004740 ORTHO05D005991 1.0e-157 560.5 371 82.7
Potri.009G077800 Populus trichocarpa HOM05D004740 ORTHO05D005991 1.4e-157 560.1 384 79.4
Hund29009 Selenicereus undatus HOM05D004740 ORTHO05D005991 3.0e-157 558.9 332 86.7
Hund29013 Selenicereus undatus HOM05D004740 ORTHO05D005991 3.0e-157 558.9 332 86.7
Sc12g0002010 Simmondsia chinensis HOM05D004740 ORTHO05D005991 3.0e-157 558.9 388 79.1
SGA_v2.0_scaffold146G36123 Striga asiatica HOM05D004740 ORTHO05D005991 3.0e-157 558.9 377 79.6
Prupe.6G048900 Prunus persica HOM05D004740 ORTHO05D005991 6.7e-157 557.8 385 78.7
Sed0001589 Sechium edule HOM05D004740 ORTHO05D005991 1.1e-156 557.0 378 78.8
THA.LOC104800771 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 1.1e-156 557.0 368 81.5
TWI75G0989 Tripterygium wilfordii HOM05D004740 ORTHO05D005991 1.1e-156 557.0 400 75.8
Migut.N00764 Erythranthe guttata HOM05D004740 ORTHO05D005991 1.5e-156 556.6 388 78.1
CAN.G911.42 Capsicum annuum HOM05D004740 ORTHO05D005991 2.0e-156 556.2 377 79.6
Sabra09G0059400 Salix brachista HOM05D004740 ORTHO05D005991 4.4e-156 555.1 375 79.7
FAN11G1726 Fragaria x ananassa HOM05D004740 ORTHO05D005991 7.4e-156 554.3 405 74.8
FAN16G0900 Fragaria x ananassa HOM05D004740 ORTHO05D005991 7.4e-156 554.3 405 74.8
MD11G1056800 Malus domestica HOM05D004740 ORTHO05D005991 7.4e-156 554.3 386 78.5
EL10Ac7g15913 Beta vulgaris HOM05D004740 ORTHO05D005991 9.7e-156 553.9 381 78.0
FAN21G3316 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.3e-155 553.5 409 74.3
FAN21G3649 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.3e-155 553.5 409 74.3
ClCG03G000380 Citrullus lanatus HOM05D004740 ORTHO05D005991 1.7e-155 553.1 410 75.1
FAN25G0671 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.7e-155 553.1 406 74.6
Lj2A1092T52 Lonicera japonica HOM05D004740 ORTHO05D005991 2.8e-155 552.4 376 78.7
MD03G1055800 Malus domestica HOM05D004740 ORTHO05D005991 3.7e-155 552.0 385 77.9
PSO339G6109 Papaver somniferum HOM05D004740 ORTHO05D005991 3.1e-154 548.9 397 77.1
PSO801G0690 Papaver somniferum HOM05D004740 ORTHO05D005991 1.2e-153 547.0 390 78.2
HanXRQChr01g0012131 Helianthus annuus HOM05D004740 ORTHO05D005991 1.6e-153 546.6 398 75.4
Eucgr.J01859 Eucalyptus grandis HOM05D004740 ORTHO05D005991 2.6e-153 545.8 370 79.5
TAR633G1387 Trochodendron aralioides HOM05D004740 ORTHO05D005991 1.3e-152 543.5 328 86.6
DCAR_018228 Daucus carota HOM05D004740 ORTHO05D005991 1.1e-151 540.4 333 84.1
Os03g0297400 Oryza sativa ssp. japonica HOM05D004740 ORTHO05D005991 1.9e-151 539.7 377 76.9
AUR62001878 Chenopodium quinoa HOM05D004740 ORTHO05D005991 5.5e-151 538.1 378 75.7
Aqoxy2G00789 Aquilegia oxysepala HOM05D004740 ORTHO05D005991 9.4e-151 537.3 394 74.6
CDE06G2756 Ceratophyllum demersum HOM05D004740 ORTHO05D005991 9.4e-151 537.3 402 73.6
ECA248G3413 Erigeron canadensis HOM05D004740 ORTHO05D005991 1.0e-149 533.9 389 73.5
AUR62009675 Chenopodium quinoa HOM05D004740 ORTHO05D005991 3.0e-149 532.3 378 74.3
Zm00001eb013760 Zea mays HOM05D004740 ORTHO05D005991 3.0e-149 532.3 326 82.8
TPR.G35611 Trifolium pratense HOM05D004740 ORTHO05D005991 6.7e-149 531.2 307 87.6
HPP92_013770 Vanilla planifolia HOM05D004740 ORTHO05D005991 5.7e-148 528.1 332 81.3
BcaB01g04122 Brassica carinata HOM05D004740 ORTHO05D005991 2.8e-147 525.8 366 79.2
MBI05_g35601_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D005991 4.8e-147 525.0 386 75.6
Cc01_g14810 Coffea canephora HOM05D004740 ORTHO05D005991 6.3e-147 524.6 297 90.6
Nn2g13251 Nelumbo nucifera HOM05D004740 ORTHO05D005991 8.2e-147 524.2 367 78.5
unitig_60.g25555 Utricularia gibba HOM05D004740 ORTHO05D005991 1.4e-146 523.5 374 74.3
HanXRQChr01g0012161 Helianthus annuus HOM05D004740 ORTHO05D005991 2.0e-145 519.6 377 74.5
BcaC01g06023 Brassica carinata HOM05D004740 ORTHO05D005991 3.5e-145 518.8 369 77.8
CiPaw.14G054500 Carya illinoinensis HOM05D004740 ORTHO05D005991 3.8e-144 515.4 297 88.6
SEGI_23058 Sequoiadendron giganteum HOM05D004740 ORTHO05D005991 2.1e-142 509.6 388 72.7
ATR0594G208 Amborella trichopoda HOM05D004740 ORTHO05D005991 6.8e-141 504.6 297 87.2
Pp3c20_19160 Physcomitrium patens HOM05D004740 ORTHO05D005991 1.5e-140 503.4 369 74.0
Actinidia32613 Actinidia chinensis HOM05D004740 ORTHO05D005991 7.5e-140 501.1 377 74.3
Lsat_1_v5_gn_5_174621 Lactuca sativa HOM05D004740 ORTHO05D005991 2.8e-139 499.2 423 67.4
Mapoly0009s0078 Marchantia polymorpha HOM05D004740 ORTHO05D005991 7.0e-138 494.6 333 76.0
C03p19860 Brassica napus HOM05D004740 ORTHO05D005991 3.5e-137 492.3 335 80.6
A04p22970 Brassica napus HOM05D004740 ORTHO05D005991 5.0e-136 488.4 346 78.0
Sed0003355 Sechium edule HOM05D004740 ORTHO05D005991 2.0e-132 476.5 313 79.2
AagrBONN_evm.TU.Sc2ySwM_228.2654 Anthoceros agrestis HOM05D004740 ORTHO05D005991 7.5e-132 474.6 374 68.2
Atru.chr3.4126 Acer truncatum HOM05D004740 ORTHO05D005991 4.5e-129 465.3 406 66.0
arahy.Tifrunner.gnm1.ann1.R7F6LC Arachis hypogaea HOM05D004740 ORTHO05D005991 2.5e-127 459.5 272 91.2
SHI19203 Sapria himalayana HOM05D004740 ORTHO05D005991 1.4e-125 453.8 431 61.0
SMO200G0259 Selaginella moellendorffii HOM05D004740 ORTHO05D005991 1.8e-125 453.4 311 73.6
Cpa.g.sc2.364 Carica papaya HOM05D004740 ORTHO05D005991 2.8e-118 429.5 246 91.1
Cre14.g621650 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 7.5e-116 421.4 321 69.2
Nn2g10995 Nelumbo nucifera HOM05D004740 ORTHO05D005991 1.2e-113 414.1 384 65.1
Potri.001G282600 Populus trichocarpa HOM05D004740 ORTHO05D005991 8.1e-110 401.4 342 69.9
CBR_g33923 Chara braunii HOM05D004740 ORTHO05D005991 1.2e-108 397.5 334 62.6
PRCOL_00005899 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 2.9e-107 392.9 285 69.5
MCO01G413 Micromonas commoda HOM05D004740 ORTHO05D005991 2.2e-99 366.7 309 61.8
GSVIVG01024639001 Vitis vinifera HOM05D004740 ORTHO05D005991 4.9e-91 339.0 198 89.4
A03p16880 Brassica napus HOM05D004740 ORTHO05D005991 4.9e-83 312.4 198 84.3
BraA03t10976Z Brassica rapa HOM05D004740 ORTHO05D005991 4.9e-83 312.4 198 84.3
Oeu005355.3 Olea europaea HOM05D003290 ORTHO05D005991 1.3e-75 287.7 166 88.0
Actinidia23202 Actinidia chinensis HOM05D004740 ORTHO05D005991 9.0e-69 265.0 365 49.0
PRCOL_00000466 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 1.3e-67 261.2 294 47.6
MCO04G051 Micromonas commoda HOM05D004740 ORTHO05D005991 2.2e-59 233.8 293 45.1
Cre02.g088250 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 1.4e-56 224.6 324 42.9
GSVIVG01024638001 Vitis vinifera HOM05D004740 ORTHO05D005991 2.8e-54 216.9 130 85.4
Actinidia02620 Actinidia chinensis HOM05D004740 ORTHO05D005991 9.1e-53 211.8 154 74.0
COL.COLO4_24546 Corchorus olitorius HOM05D004740 ORTHO05D008255 9.4e-50 201.8 225 58.2
Nitab4.5_0006359g0020 Nicotiana tabacum HOM05D004740 ORTHO05D005991 3.6e-49 199.9 178 64.6
Nitab4.5_0006126g0030 Nicotiana tabacum HOM05D004740 ORTHO05D005991 6.3e-38 162.5 213 49.8
Nitab4.5_0000644g0120 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.4e-37 161.4 149 60.4
Oeu025052.1 Olea europaea HOM05D004740 ORTHO05D005991 8.0e-33 145.6 126 63.5
Zm00001eb396720 Zea mays HOM05D004740 ORTHO05D444996 2.8e-30 137.1 80 85.0
HPP92_013838 Vanilla planifolia HOM05D004740 ORTHO05D005991 7.2e-26 122.5 86 67.4
MBI10_g37352_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D241996 2.3e-16 90.9 75 65.3
Nitab4.5_0000644g0100 Nicotiana tabacum HOM05D004740 ORTHO05D284956 4.4e-15 86.7 48 91.7
VMungo0331G0938 Vigna mungo HOM05D000577 ORTHO05D001093 6.3e-14 82.8 64 71.9
HPP92_012003 Vanilla planifolia HOM05D004740 ORTHO05D429499 2.0e-12 77.8 90 51.1
Carub.0004s1136 Capsella rubella HOM05D004740 ORTHO05D005991 2.5e-10 70.9 42 73.8
COL.COLO4_37924 Corchorus olitorius HOM05D004740 ORTHO05D005991 1.2e-09 68.6 91 54.9
MBI15_g35007_MAGBIO Magnolia biondii HOM05D000363 ORTHO05D017376 8.9e-08 62.4 43 74.4


User provided reference genes

Program Settings