Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.FH5WCV Arachis hypogaea HOM05D003646 ORTHO05D023331 2.6e-42 174.9 82 100.0
arahy.Tifrunner.gnm1.ann1.ZHHZ35 Arachis hypogaea HOM05D003646 ORTHO05D004503 7.1e-32 140.2 68 92.6
arahy.Tifrunner.gnm1.ann1.B2SP7Q Arachis hypogaea HOM05D003646 ORTHO05D023331 2.0e-26 122.1 68 88.2
arahy.Tifrunner.gnm1.ann1.JWY1N0 Arachis hypogaea HOM05D003646 ORTHO05D023331 4.9e-25 117.5 68 85.3
TWI56G0364 Tripterygium wilfordii HOM05D003646 ORTHO05D004503 1.1e-24 116.3 68 77.9
CANSAT64G2942 Cannabis sativa HOM05D003646 ORTHO05D004503 2.4e-24 115.2 68 77.9
Psat1g086840 Pisum sativum HOM05D003646 ORTHO05D004503 7.1e-24 113.6 68 79.4
CiPaw.03G055000 Carya illinoinensis HOM05D003646 ORTHO05D004503 9.3e-24 113.2 68 76.5
TWI36G1744 Tripterygium wilfordii HOM05D003646 ORTHO05D004503 9.3e-24 113.2 68 73.5
FAN11G3558 Fragaria x ananassa HOM05D003646 ORTHO05D004503 1.2e-23 112.8 66 78.8
FAN14G4384 Fragaria x ananassa HOM05D003646 ORTHO05D004503 1.2e-23 112.8 66 78.8
FAN23G1915 Fragaria x ananassa HOM05D003646 ORTHO05D001720 1.2e-23 112.8 66 78.8
FAN26G1520 Fragaria x ananassa HOM05D003646 ORTHO05D001720 1.2e-23 112.8 66 78.8
Medtr6g023975 Medicago truncatula HOM05D003646 ORTHO05D004503 1.2e-23 112.8 68 79.4
Lj1g0013072 Lotus japonicus HOM05D003646 ORTHO05D004503 1.6e-23 112.5 68 75.0
Thecc.04G035300 Theobroma cacao HOM05D003646 ORTHO05D004503 1.6e-23 112.5 68 73.5
Dinv33342 Davidia involucrata HOM05D003646 ORTHO05D023331 2.1e-23 112.1 66 77.3
Duzib187G0941 Durio zibethinus HOM05D003646 ORTHO05D004503 2.1e-23 112.1 68 75.0
Sed0021199 Sechium edule HOM05D003646 ORTHO05D004503 2.1e-23 112.1 68 73.5
TAR622G1416 Trochodendron aralioides HOM05D003646 ORTHO05D004503 2.1e-23 112.1 68 76.5
Cfa007232 Carpinus fangiana HOM05D003646 ORTHO05D004503 2.7e-23 111.7 68 75.0
Duzib147G0655 Durio zibethinus HOM05D003646 ORTHO05D004503 2.7e-23 111.7 68 76.5
Hma1.2p1_0279F.1_g112713 Hydrangea macrophylla HOM05D003646 ORTHO05D004503 3.5e-23 111.3 68 73.5
Hma1.2p1_2636F.1_g325800 Hydrangea macrophylla HOM05D003646 ORTHO05D004503 3.5e-23 111.3 68 73.5
QL02p071550 Quercus lobata HOM05D003646 ORTHO05D004503 4.6e-23 110.9 68 75.0
Ca_04435_v3 Cicer arietinum L. HOM05D003646 ORTHO05D004503 7.9e-23 110.2 68 76.5
TPR.G16204 Trifolium pratense HOM05D003646 ORTHO05D004503 1.0e-22 109.8 68 76.5
Haze_14869 Corylus avellana HOM05D003646 ORTHO05D004503 1.8e-22 109.0 84 61.9
HanXRQChr14g0450741 Helianthus annuus HOM05D003646 ORTHO05D004503 1.8e-22 109.0 68 72.1
TPR.G38353 Trifolium pratense HOM05D003646 ORTHO05D004503 1.8e-22 109.0 68 75.0
Actinidia04439 Actinidia chinensis HOM05D003646 ORTHO05D004503 2.3e-22 108.6 68 72.1
Cpa.g.sc171.20 Carica papaya HOM05D003646 ORTHO05D004503 2.3e-22 108.6 82 64.6
MBI07_g34622_MAGBIO Magnolia biondii HOM05D003646 ORTHO05D004503 2.3e-22 108.6 67 74.6
Ciclev10015526m.g Citrus clementina HOM05D003646 ORTHO05D004503 3.0e-22 108.2 67 76.1
TAR374G0357 Trochodendron aralioides HOM05D003646 ORTHO05D004503 3.0e-22 108.2 71 70.4
ATR0561G114 Amborella trichopoda HOM05D003646 ORTHO05D004503 3.9e-22 107.8 67 74.6
BolC5t30091H Brassica oleracea HOM05D003646 ORTHO05D004503 3.9e-22 107.8 70 70.0
CDE05G3065 Ceratophyllum demersum HOM05D003646 ORTHO05D004503 3.9e-22 107.8 68 72.1
PSO017G2867 Papaver somniferum HOM05D003646 ORTHO05D004503 3.9e-22 107.8 68 73.5
PSO478G1257 Papaver somniferum HOM05D003646 ORTHO05D004503 3.9e-22 107.8 68 73.5
CDE02G1734 Ceratophyllum demersum HOM05D003646 ORTHO05D004503 5.1e-22 107.5 68 72.1
Gohir.A07G227900 Gossypium hirsutum HOM05D003646 ORTHO05D004503 5.1e-22 107.5 68 72.1
Gohir.D07G235000 Gossypium hirsutum HOM05D003646 ORTHO05D004503 5.1e-22 107.5 68 72.1
Gohir.D09G036700 Gossypium hirsutum HOM05D003646 ORTHO05D004503 5.1e-22 107.5 68 72.1
Gorai.001G270800 Gossypium raimondii HOM05D003646 ORTHO05D004503 5.1e-22 107.5 68 72.1
Gorai.006G041700 Gossypium raimondii HOM05D003646 ORTHO05D004503 5.1e-22 107.5 68 72.1
Rhsim08G0043500 Rhododendron simsii HOM05D003646 ORTHO05D004503 5.1e-22 107.5 68 69.1
THA.LOC104821116 Tarenaya hassleriana HOM05D003646 ORTHO05D004503 5.1e-22 107.5 67 74.6
FAN02G3516 Fragaria x ananassa HOM05D003646 ORTHO05D004503 6.7e-22 107.1 66 74.2
Manes.15G160200 Manihot esculenta HOM05D003646 ORTHO05D004503 6.7e-22 107.1 68 72.1
Phvul.004G054200 Phaseolus vulgaris HOM05D003646 ORTHO05D004503 6.7e-22 107.1 68 72.1
GSVIVG01033099001 Vitis vinifera HOM05D003646 ORTHO05D004503 6.7e-22 107.1 68 72.1
PGSC0003DMG400020212 Solanum tuberosum HOM05D003646 ORTHO05D004503 8.7e-22 106.7 68 70.6
Atru.chr6.2563 Acer truncatum HOM05D003646 ORTHO05D004503 1.1e-21 106.3 68 72.1
Aqoxy5G03396 Aquilegia oxysepala HOM05D003646 ORTHO05D004503 1.1e-21 106.3 68 72.1
C05p13540 Brassica napus HOM05D003646 ORTHO05D004503 1.1e-21 106.3 70 68.6
MELO3C004917.2 Cucumis melo HOM05D003646 ORTHO05D004503 1.1e-21 106.3 68 72.1
CsaV3_1G013880 Cucumis sativus L. HOM05D003646 ORTHO05D004503 1.1e-21 106.3 68 72.1
Glyma.19G071800 Glycine max HOM05D003646 ORTHO05D004503 1.1e-21 106.3 68 73.5
Gohir.A09G035500 Gossypium hirsutum HOM05D003646 ORTHO05D004503 1.5e-21 105.9 68 70.6
Lj2g0025838 Lotus japonicus HOM05D003646 ORTHO05D004503 1.5e-21 105.9 66 74.2
PGR083G0278 Punica granatum HOM05D003646 ORTHO05D004503 1.5e-21 105.9 67 73.1
FvH4_6g53430 Fragaria vesca HOM05D003646 ORTHO05D004503 1.9e-21 105.5 66 74.2
Sabra16G0211900 Salix brachista HOM05D003646 ORTHO05D004503 1.9e-21 105.5 68 70.6
Sp3g00180 Schrenkiella parvula HOM05D003646 ORTHO05D004503 1.9e-21 105.5 67 70.1
Aa31LG5G11030 Aethionema arabicum HOM05D003646 ORTHO05D004503 2.5e-21 105.1 67 73.1
Solyc02g094120.3 Solanum lycopersicum HOM05D003646 ORTHO05D004503 2.5e-21 105.1 68 70.6
MELO3C008194.2 Cucumis melo HOM05D003646 ORTHO05D004503 3.3e-21 104.8 68 73.5
HanXRQChr07g0198211 Helianthus annuus HOM05D003646 ORTHO05D004503 3.3e-21 104.8 82 63.4
Sopen02g038740 Solanum pennellii HOM05D003646 ORTHO05D004503 3.3e-21 104.8 68 69.1
Actinidia30882 Actinidia chinensis HOM05D003646 ORTHO05D004503 4.3e-21 104.4 68 69.1
Lalb_Chr21g0317451 Lupinus albus HOM05D003646 ORTHO05D004503 4.3e-21 104.4 68 73.5
Oeu013941.2 Olea europaea HOM05D003646 ORTHO05D004503 4.3e-21 104.4 68 73.5
RcHm_v2.0_Chr2g0175501 Rosa chinensis HOM05D003646 ORTHO05D004503 4.3e-21 104.4 66 69.7
Os08g0530400 Oryza sativa ssp. japonica HOM05D003646 ORTHO05D004503 5.6e-21 104.0 68 72.1
Zm00001eb036560 Zea mays HOM05D003646 ORTHO05D004503 5.6e-21 104.0 68 72.1
Oeu035221.1 Olea europaea HOM05D003646 ORTHO05D004503 7.4e-21 103.6 68 70.6
Potri.001G330900 Populus trichocarpa HOM05D003646 ORTHO05D004503 7.4e-21 103.6 68 70.6
Carub.0003s0017 Capsella rubella HOM05D003646 ORTHO05D004503 9.6e-21 103.2 67 70.1
Nitab4.5_0011569g0050 Nicotiana tabacum HOM05D003646 ORTHO05D004503 9.6e-21 103.2 68 69.1
MD16G1118100 Malus domestica HOM05D003646 ORTHO05D004503 1.3e-20 102.8 68 70.6
Nn3g16489 Nelumbo nucifera HOM05D003646 ORTHO05D004503 1.3e-20 102.8 68 70.6
CARHR075040 Cardamine hirsuta HOM05D003646 ORTHO05D004503 1.6e-20 102.4 67 68.7
AUR62003508 Chenopodium quinoa HOM05D003646 ORTHO05D004503 1.6e-20 102.4 68 72.1
Psat3g164760 Pisum sativum HOM05D003646 ORTHO05D004503 1.6e-20 102.4 68 72.1
ECA238G3019 Erigeron canadensis HOM05D003646 ORTHO05D004503 2.1e-20 102.1 68 64.7
MD09G1011300 Malus domestica HOM05D003646 ORTHO05D004503 2.1e-20 102.1 66 69.7
AL3G10220 Arabidopsis lyrata HOM05D003646 ORTHO05D004503 2.8e-20 101.7 67 67.2
AT3G01910 Arabidopsis thaliana HOM05D003646 ORTHO05D004503 2.8e-20 101.7 67 67.2
Prupe.1G227000 Prunus persica HOM05D003646 ORTHO05D004503 2.8e-20 101.7 68 67.6
Peaxi162Scf00420g00552 Petunia axillaris HOM05D003646 ORTHO05D004503 3.7e-20 101.3 68 67.6
Prupe.3G305700 Prunus persica HOM05D003646 ORTHO05D004503 3.7e-20 101.3 66 68.2
Thhalv10022262m.g Eutrema salsugineum HOM05D003646 ORTHO05D004503 4.8e-20 100.9 67 67.2
FvH4_4g23890 Fragaria vesca HOM05D003646 ORTHO05D004503 4.8e-20 100.9 68 67.6
FAN12G1917 Fragaria x ananassa HOM05D003646 ORTHO05D004503 4.8e-20 100.9 68 67.6
Ah.03g147470 Amaranthus hybridus HOM05D003646 ORTHO05D004503 6.2e-20 100.5 68 70.6
CAN.G473.96 Capsicum annuum HOM05D003646 ORTHO05D004503 8.1e-20 100.1 68 69.1
Ca_26781_v3 Cicer arietinum L. HOM05D003646 ORTHO05D004503 8.1e-20 100.1 68 69.1
FvH4_6g53352 Fragaria vesca HOM05D003646 ORTHO05D004503 8.1e-20 100.1 63 74.6
FAN07G1027 Fragaria x ananassa HOM05D003646 ORTHO05D004503 8.1e-20 100.1 68 67.6
FAN17G0152 Fragaria x ananassa HOM05D003646 ORTHO05D004503 8.1e-20 100.1 68 67.6
Eucgr.J02338 Eucalyptus grandis HOM05D003646 ORTHO05D004503 1.1e-19 99.8 67 68.7
Manes.17G103400 Manihot esculenta HOM05D003646 ORTHO05D004503 1.4e-19 99.4 67 65.7
A06p11420 Brassica napus HOM05D003646 ORTHO05D004503 1.8e-19 99.0 73 64.4
BraA06t24320Z Brassica rapa HOM05D003646 ORTHO05D004503 1.8e-19 99.0 73 64.4
CSS0046571 Camellia sinensis var. sinensis HOM05D003646 ORTHO05D004503 2.4e-19 98.6 68 67.6
SalBow7G3637 Salvia bowleyana HOM05D003646 ORTHO05D004503 2.4e-19 98.6 68 66.2
BcaC03g16939 Brassica carinata HOM05D003646 ORTHO05D004503 5.3e-19 97.4 67 67.2
C02p48410 Brassica napus HOM05D003646 ORTHO05D004503 5.3e-19 97.4 67 67.2
SGA_v2.0_scaffold154G37169 Striga asiatica HOM05D003646 ORTHO05D004503 5.3e-19 97.4 68 67.6
SalBow4G1548 Salvia bowleyana HOM05D003646 ORTHO05D004503 9.0e-19 96.7 68 64.7
MSTRG.24091 Avicennia marina HOM05D003646 ORTHO05D004503 1.5e-18 95.9 68 64.7
BraA02t08098Z Brassica rapa HOM05D003646 ORTHO05D004503 2.0e-18 95.5 87 57.5
Migut.K01461 Erythranthe guttata HOM05D003646 ORTHO05D004503 2.6e-18 95.1 64 65.6
BcaC05g25479 Brassica carinata HOM05D003646 ORTHO05D004503 3.4e-18 94.7 67 64.2
A02p30850 Brassica napus HOM05D003646 ORTHO05D004503 3.4e-18 94.7 86 58.1
Migut.F00068 Erythranthe guttata HOM05D003646 ORTHO05D004503 3.4e-18 94.7 66 66.7
Actinidia20705 Actinidia chinensis HOM05D003646 ORTHO05D004503 4.5e-18 94.4 68 64.7
Hund29483 Selenicereus undatus HOM05D003646 ORTHO05D004503 4.5e-18 94.4 68 67.6
Hund29484 Selenicereus undatus HOM05D003646 ORTHO05D004503 4.5e-18 94.4 68 67.6
unitig_578.g15929 Utricularia gibba HOM05D003646 ORTHO05D004503 3.8e-17 91.3 68 61.8
BolC2t10871H Brassica oleracea HOM05D003646 ORTHO05D004503 4.9e-17 90.9 67 62.7
Mapoly0004s0050 Marchantia polymorpha HOM05D003646 ORTHO05D004503 1.4e-16 89.4 62 64.5
SGA_v2.0_scaffold253G45201 Striga asiatica HOM05D003646 ORTHO05D004503 2.5e-16 88.6 80 51.2
Actinidia09655 Actinidia chinensis HOM05D003646 ORTHO05D023331 7.9e-15 83.6 67 58.2
arahy.Tifrunner.gnm1.ann1.415AAL Arachis hypogaea HOM05D003646 ORTHO05D004503 7.9e-15 83.6 53 75.5
Os12g0442800 Oryza sativa ssp. japonica HOM05D003646 ORTHO05D004503 3.9e-14 81.3 64 60.9
arahy.Tifrunner.gnm1.ann1.WU8KPG Arachis hypogaea HOM05D003646 ORTHO05D083789 6.7e-14 80.5 40 85.0
Lsat_1_v5_gn_2_92941 Lactuca sativa HOM05D003646 ORTHO05D004503 1.5e-13 79.3 68 55.9
CBR_g21855 Chara braunii HOM05D003646 ORTHO05D004503 4.8e-12 74.3 67 53.7
ClCG03G002950 Citrullus lanatus HOM05D003646 ORTHO05D004503 4.8e-12 74.3 68 54.4
COL.COLO4_17205 Corchorus olitorius HOM05D003646 ORTHO05D004503 6.2e-12 73.9 40 77.5
SHI03945 Sapria himalayana HOM05D000105 ORTHO05D000023 6.2e-12 73.9 39 79.5
SMO145G0143 Selaginella moellendorffii HOM05D003646 ORTHO05D004503 8.2e-12 73.6 62 54.8
ClCG11G007080 Citrullus lanatus HOM05D003646 ORTHO05D004503 1.4e-11 72.8 54 64.8
Sc03g0006580 Simmondsia chinensis HOM05D003646 ORTHO05D004503 1.8e-11 72.4 39 82.1
AagrBONN_evm.TU.Sc2ySwM_228.2970 Anthoceros agrestis HOM05D003646 ORTHO05D004503 2.4e-11 72.0 75 46.7
CsaV3_2G034140 Cucumis sativus L. HOM05D003646 ORTHO05D004503 3.1e-11 71.6 63 58.7
CSS0048682 Camellia sinensis var. sinensis HOM05D005629 ORTHO05D004503 4.0e-11 71.2 39 79.5
DCAR_021791 Daucus carota HOM05D003646 ORTHO05D004503 6.9e-11 70.5 39 79.5
vmacro18340 Vaccinium macrocarpon HOM05D003646 ORTHO05D004503 6.9e-11 70.5 41 75.6
BcaC05g25487 Brassica carinata HOM05D003646 ORTHO05D004503 1.2e-10 69.7 44 70.5
Lj7A608G42 Lonicera japonica HOM05D003646 ORTHO05D004503 1.2e-10 69.7 39 76.9
HPP92_007003 Vanilla planifolia HOM05D003646 ORTHO05D004503 2.0e-10 68.9 39 76.9
Cc07_g00790 Coffea canephora HOM05D003646 ORTHO05D004503 2.6e-10 68.6 39 76.9
VMungo0464G0965 Vigna mungo HOM05D003646 ORTHO05D004503 2.6e-10 68.6 38 78.9
AUR62017819 Chenopodium quinoa HOM05D003646 ORTHO05D004503 4.5e-10 67.8 39 76.9
Medtr7g033410 Medicago truncatula HOM05D003646 ORTHO05D004503 7.6e-10 67.0 37 75.7
Pp3c4_10110 Physcomitrium patens HOM05D003646 ORTHO05D004503 2.2e-09 65.5 56 58.9
Rhsim12G0099200 Rhododendron simsii HOM05D003646 ORTHO05D004503 5.0e-09 64.3 38 65.8
SEGI_06264 Sequoiadendron giganteum HOM05D003646 ORTHO05D004503 1.2e-07 59.7 39 61.5
TPR.G11255 Trifolium pratense HOM05D003646 ORTHO05D004503 6.7e-06 53.9 31 74.2


User provided reference genes

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