Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.FH3EPN Arachis hypogaea HOM05D004924 ORTHO05D005896 2.2e-87 325.5 150 100.0
Glyma.18G041600 Glycine max HOM05D004924 ORTHO05D005896 5.0e-68 261.2 139 82.7
Phvul.001G229100 Phaseolus vulgaris HOM05D004924 ORTHO05D005896 1.9e-67 259.2 138 81.9
Glyma.18G041500 Glycine max HOM05D004924 ORTHO05D005896 2.5e-67 258.8 135 83.0
Lj6g0022987 Lotus japonicus HOM05D004924 ORTHO05D005896 1.6e-66 256.1 140 78.6
VMungo1383G1490 Vigna mungo HOM05D004924 ORTHO05D005896 1.1e-65 253.4 138 79.0
Ca_17087_v3 Cicer arietinum L. HOM05D004924 ORTHO05D005896 4.0e-65 251.5 138 79.0
Psat5g120000 Pisum sativum HOM05D004924 ORTHO05D005896 6.8e-65 250.8 138 78.3
Lalb_Chr15g0085011 Lupinus albus HOM05D004924 ORTHO05D005896 1.3e-63 246.5 139 74.1
Cfa007788 Carpinus fangiana HOM05D004924 ORTHO05D005896 4.9e-63 244.6 136 75.0
Cfa007787 Carpinus fangiana HOM05D004924 ORTHO05D005896 6.4e-63 244.2 136 74.3
Psat5g119920 Pisum sativum HOM05D004924 ORTHO05D005896 1.4e-62 243.0 138 76.1
Cfa007789 Carpinus fangiana HOM05D004924 ORTHO05D005896 2.4e-62 242.3 136 73.5
Glyma.11G215100 Glycine max HOM05D004924 ORTHO05D005896 4.1e-62 241.5 127 81.9
QL02p059397 Quercus lobata HOM05D004924 ORTHO05D005896 4.1e-62 241.5 136 74.3
Medtr3g065140 Medicago truncatula HOM05D004924 ORTHO05D005896 1.6e-61 239.6 138 75.4
Haze_14284 Corylus avellana HOM05D004924 ORTHO05D005896 3.5e-61 238.4 136 74.3
QL02p059388 Quercus lobata HOM05D004924 ORTHO05D005896 3.5e-61 238.4 136 73.5
TPR.G23209 Trifolium pratense HOM05D004924 ORTHO05D005896 3.5e-61 238.4 138 74.6
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 4.6e-61 238.0 137 73.0
CiPaw.03G073900 Carya illinoinensis HOM05D004924 ORTHO05D005896 1.0e-60 236.9 136 74.3
CiPaw.03G074000 Carya illinoinensis HOM05D004924 ORTHO05D005896 1.3e-60 236.5 136 73.5
Hma1.2p1_0158F.1_g070040 Hydrangea macrophylla HOM05D004924 ORTHO05D005896 1.3e-60 236.5 136 71.3
ClCG08G009070 Citrullus lanatus HOM05D004924 ORTHO05D005896 2.3e-60 235.7 135 71.9
Cc07_g13240 Coffea canephora HOM05D004924 ORTHO05D005896 2.3e-60 235.7 135 71.9
Sopen11g006240 Solanum pennellii HOM05D004924 ORTHO05D005896 2.3e-60 235.7 134 74.6
Potri.017G131900 Populus trichocarpa HOM05D004924 ORTHO05D005896 3.0e-60 235.3 134 72.4
Solyc11g011450.2 Solanum lycopersicum HOM05D004924 ORTHO05D005896 3.0e-60 235.3 134 74.6
PGSC0003DMG400013239 Solanum tuberosum HOM05D004924 ORTHO05D005896 3.0e-60 235.3 134 74.6
Duzib133G0699 Durio zibethinus HOM05D004924 ORTHO05D005896 8.6e-60 233.8 134 71.6
Gorai.004G266800 Gossypium raimondii HOM05D004924 ORTHO05D005896 8.6e-60 233.8 135 72.6
FvH4_1g30100 Fragaria vesca HOM05D004924 ORTHO05D005896 1.5e-59 233.0 135 70.4
Oeu062709.1 Olea europaea HOM05D004924 ORTHO05D005896 1.9e-59 232.6 135 71.9
COL.COLO4_17898 Corchorus olitorius HOM05D004924 ORTHO05D005896 3.3e-59 231.9 136 72.1
Nn3g18375 Nelumbo nucifera HOM05D004924 ORTHO05D005896 3.3e-59 231.9 136 71.3
MD09G1269800 Malus domestica HOM05D004924 ORTHO05D005896 4.3e-59 231.5 136 70.6
RcHm_v2.0_Chr3g0491731 Rosa chinensis HOM05D004924 ORTHO05D005896 5.6e-59 231.1 135 70.4
FvH4_1g27730 Fragaria vesca HOM05D004924 ORTHO05D005896 9.5e-59 230.3 138 66.7
FAN16G2823 Fragaria x ananassa HOM05D004924 ORTHO05D005896 9.5e-59 230.3 135 69.6
Gohir.A08G229800 Gossypium hirsutum HOM05D004924 ORTHO05D005896 9.5e-59 230.3 135 71.9
vmacro18525 Vaccinium macrocarpon HOM05D004924 ORTHO05D005896 9.5e-59 230.3 138 71.7
Nitab4.5_0001650g0010 Nicotiana tabacum HOM05D004924 ORTHO05D005896 1.2e-58 229.9 134 72.4
RcHm_v2.0_Chr3g0491661 Rosa chinensis HOM05D004924 ORTHO05D005896 1.2e-58 229.9 135 69.6
Thecc.04G063500 Theobroma cacao HOM05D004924 ORTHO05D005896 1.2e-58 229.9 136 70.6
TWI53G1907 Tripterygium wilfordii HOM05D004924 ORTHO05D005896 1.2e-58 229.9 135 69.6
Sed0017700 Sechium edule HOM05D004924 ORTHO05D005896 1.6e-58 229.6 133 69.2
MELO3C026504.2 Cucumis melo HOM05D004924 ORTHO05D005896 2.1e-58 229.2 135 70.4
FAN19G2011 Fragaria x ananassa HOM05D004924 ORTHO05D005896 2.1e-58 229.2 138 65.9
CsaV3_6G036070 Cucumis sativus L. HOM05D004924 ORTHO05D005896 2.8e-58 228.8 135 70.4
Eucgr.F02877 Eucalyptus grandis HOM05D004924 ORTHO05D005896 2.8e-58 228.8 135 67.4
PSO017G6719 Papaver somniferum HOM05D004924 ORTHO05D005896 2.8e-58 228.8 134 72.4
RcHm_v2.0_Chr3g0491901 Rosa chinensis HOM05D004924 ORTHO05D005896 2.8e-58 228.8 135 68.9
MSTRG.11290 Avicennia marina HOM05D004924 ORTHO05D005896 3.6e-58 228.4 135 71.1
Manes.01G120100 Manihot esculenta HOM05D004924 ORTHO05D005896 3.6e-58 228.4 135 68.9
Prupe.3G165600 Prunus persica HOM05D004924 ORTHO05D005896 3.6e-58 228.4 134 70.1
CANSAT64G2411 Cannabis sativa HOM05D004924 ORTHO05D005896 4.7e-58 228.0 134 70.9
CAN.G222.65 Capsicum annuum HOM05D004924 ORTHO05D005896 4.7e-58 228.0 134 70.9
Gohir.D08G250200 Gossypium hirsutum HOM05D004924 ORTHO05D005896 4.7e-58 228.0 135 71.1
SalBow3G4470 Salvia bowleyana HOM05D004924 ORTHO05D005896 4.7e-58 228.0 135 71.1
MSTRG.11286 Avicennia marina HOM05D004924 ORTHO05D005896 6.2e-58 227.6 135 71.1
Eucgr.F02876 Eucalyptus grandis HOM05D004924 ORTHO05D005896 6.2e-58 227.6 135 67.4
Oeu062710.1 Olea europaea HOM05D004924 ORTHO05D005896 6.2e-58 227.6 135 71.1
GSVIVG01021786001 Vitis vinifera HOM05D004924 ORTHO05D005896 6.2e-58 227.6 137 70.1
Actinidia28798 Actinidia chinensis HOM05D004924 ORTHO05D005896 1.1e-57 226.9 136 67.6
Psat5g119960 Pisum sativum HOM05D004924 ORTHO05D005896 1.4e-57 226.5 138 71.7
DCAR_011635 Daucus carota HOM05D004924 ORTHO05D005896 1.8e-57 226.1 135 68.1
CSS0001998 Camellia sinensis var. sinensis HOM05D004924 ORTHO05D005896 2.4e-57 225.7 132 70.5
Gohir.A08G229900 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.4e-57 225.7 136 70.6
Cpa.g.sc116.75 Carica papaya HOM05D004924 ORTHO05D005896 5.2e-57 224.6 135 71.9
FAN23G2495 Fragaria x ananassa HOM05D004924 ORTHO05D005896 5.2e-57 224.6 135 68.1
Zm00001eb099200 Zea mays HOM05D004924 ORTHO05D005896 5.2e-57 224.6 131 71.8
Peaxi162Scf00464g00014 Petunia axillaris HOM05D004924 ORTHO05D005896 6.8e-57 224.2 134 70.1
Atru.chr1.1951 Acer truncatum HOM05D004924 ORTHO05D005896 8.9e-57 223.8 133 68.4
SGA_v2.0_scaffold108G30967 Striga asiatica HOM05D004924 ORTHO05D005896 1.2e-56 223.4 135 71.1
Migut.H02231 Erythranthe guttata HOM05D004924 ORTHO05D005896 4.4e-56 221.5 135 69.6
ECA238G2739 Erigeron canadensis HOM05D004924 ORTHO05D005896 9.9e-56 220.3 130 66.9
FAN10G2899 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.3e-55 219.9 135 66.7
Lsat_1_v5_gn_2_68260 Lactuca sativa HOM05D004924 ORTHO05D005896 1.3e-55 219.9 134 65.7
MBI19_g44856_MAGBIO Magnolia biondii HOM05D004924 ORTHO05D005896 3.8e-55 218.4 130 68.5
Os09g0397700 Oryza sativa ssp. japonica HOM05D004924 ORTHO05D005896 4.9e-55 218.0 132 69.7
PGR004G0557 Punica granatum HOM05D004924 ORTHO05D005896 4.9e-55 218.0 134 68.7
RcHm_v2.0_Chr3g0491691 Rosa chinensis HOM05D004924 ORTHO05D005896 8.4e-55 217.2 135 66.7
unitig_699.g19298 Utricularia gibba HOM05D004924 ORTHO05D005896 8.4e-55 217.2 134 67.2
Ciclev10013082m.g Citrus clementina HOM05D004924 ORTHO05D005896 1.1e-54 216.9 134 64.2
Potri.017G132500 Populus trichocarpa HOM05D004924 ORTHO05D005896 1.1e-54 216.9 127 68.5
Lj2C517G6 Lonicera japonica HOM05D004924 ORTHO05D005896 1.4e-54 216.5 131 67.2
Sc11g0004600 Simmondsia chinensis HOM05D004924 ORTHO05D005896 2.4e-54 215.7 133 69.9
Thhalv10016053m.g Eutrema salsugineum HOM05D004924 ORTHO05D005896 3.2e-54 215.3 134 66.4
MD09G1269600 Malus domestica HOM05D004924 ORTHO05D005896 5.4e-54 214.5 136 66.9
ATR0753G109 Amborella trichopoda HOM05D004924 ORTHO05D005896 9.2e-54 213.8 137 65.0
CARHR196230 Cardamine hirsuta HOM05D004924 ORTHO05D005896 9.2e-54 213.8 134 65.7
SEGI_33705 Sequoiadendron giganteum HOM05D004924 ORTHO05D005896 1.2e-53 213.4 132 67.4
EL10Ac3g05220 Beta vulgaris HOM05D004924 ORTHO05D005896 1.6e-53 213.0 136 69.1
MD17G1267700 Malus domestica HOM05D004924 ORTHO05D005896 1.6e-53 213.0 121 75.2
THA.LOC104820884 Tarenaya hassleriana HOM05D004924 ORTHO05D005896 2.1e-53 212.6 132 65.9
ClCG03G008860 Citrullus lanatus HOM05D004924 ORTHO05D005896 3.5e-53 211.8 116 75.9
HanXRQChr14g0444631 Helianthus annuus HOM05D004924 ORTHO05D005896 3.5e-53 211.8 134 65.7
AL6G27940 Arabidopsis lyrata HOM05D004924 ORTHO05D005896 4.6e-53 211.5 134 66.4
MELO3C022822.2 Cucumis melo HOM05D004924 ORTHO05D005896 4.6e-53 211.5 121 71.9
Gohir.D08G250300 Gossypium hirsutum HOM05D004924 ORTHO05D005896 4.6e-53 211.5 121 71.9
AT5G16940 Arabidopsis thaliana HOM05D004924 ORTHO05D005896 6.0e-53 211.1 134 65.7
Aqoxy2G04179 Aquilegia oxysepala HOM05D004924 ORTHO05D005896 7.8e-53 210.7 133 66.2
Aa31LG11G12660 Aethionema arabicum HOM05D004924 ORTHO05D005896 1.0e-52 210.3 134 64.2
Zm00001eb099210 Zea mays HOM05D004924 ORTHO05D005896 1.7e-52 209.5 131 68.7
A03p08080 Brassica napus HOM05D004924 ORTHO05D005896 2.3e-52 209.1 134 64.2
BraA03t10133Z Brassica rapa HOM05D004924 ORTHO05D005896 2.3e-52 209.1 134 64.2
AUR62035584 Chenopodium quinoa HOM05D004924 ORTHO05D005896 8.6e-52 207.2 134 69.4
Sabra17G0109900 Salix brachista HOM05D004924 ORTHO05D005896 8.6e-52 207.2 126 67.5
AUR62006044 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.1e-51 206.8 134 69.4
BcaB01g05238 Brassica carinata HOM05D004924 ORTHO05D005896 1.5e-51 206.5 133 63.9
Carub.0006s1515 Capsella rubella HOM05D004924 ORTHO05D005896 1.5e-51 206.5 134 63.4
BcaB01g04965 Brassica carinata HOM05D004924 ORTHO05D005896 1.9e-51 206.1 134 63.4
C03p09350 Brassica napus HOM05D004924 ORTHO05D005896 5.6e-51 204.5 133 63.2
Potri.017G132000 Populus trichocarpa HOM05D004924 ORTHO05D005896 5.6e-51 204.5 131 64.1
Sabra17G0109800 Salix brachista HOM05D004924 ORTHO05D005896 7.3e-51 204.1 120 72.5
Gorai.004G267000 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.2e-50 203.4 121 70.2
Glyma.11G214900 Glycine max HOM05D004924 ORTHO05D005896 1.6e-50 203.0 139 69.1
CsaV3_5G023900 Cucumis sativus L. HOM05D004924 ORTHO05D005896 4.7e-50 201.4 113 74.3
BolC3t13429H Brassica oleracea HOM05D004924 ORTHO05D005896 6.2e-50 201.1 133 62.4
Lsat_1_v5_gn_3_63921 Lactuca sativa HOM05D004924 ORTHO05D005896 6.9e-49 197.6 121 67.8
MD17G1267500 Malus domestica HOM05D004924 ORTHO05D005896 9.0e-49 197.2 129 65.1
Peaxi162Scf00464g00013 Petunia axillaris HOM05D004924 ORTHO05D005896 9.0e-49 197.2 173 53.2
Ciclev10013505m.g Citrus clementina HOM05D004924 ORTHO05D005896 7.6e-48 194.1 126 65.1
HanXRQChr15g0482911 Helianthus annuus HOM05D004924 ORTHO05D005896 9.9e-48 193.7 125 65.6
Ah.13g070610 Amaranthus hybridus HOM05D004924 ORTHO05D005896 1.3e-47 193.4 133 60.9
Gohir.A10G199166 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.4e-46 189.1 135 60.7
AagrBONN_evm.TU.Sc2ySwM_117.508 Anthoceros agrestis HOM05D004924 ORTHO05D005896 7.1e-46 187.6 130 61.5
Mapoly0175s0005 Marchantia polymorpha HOM05D004924 ORTHO05D005896 1.2e-45 186.8 131 61.8
Pp3c3_1640 Physcomitrium patens HOM05D004924 ORTHO05D005896 6.0e-45 184.5 129 59.7
SMO134G0286 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 1.3e-44 183.3 133 58.6
Zm00001eb099170 Zea mays HOM05D004924 ORTHO05D005896 5.1e-44 181.4 106 70.8
Zm00001eb099190 Zea mays HOM05D004924 ORTHO05D005896 6.6e-44 181.0 100 76.0
Gohir.A04G085566 Gossypium hirsutum HOM05D004924 ORTHO05D005896 5.6e-43 177.9 135 58.5
SMO182G0004 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 6.2e-42 174.5 133 57.1
SMO134G0172 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 2.0e-40 169.5 129 56.6
Ah.13g070620 Amaranthus hybridus HOM05D004924 ORTHO05D005896 3.8e-39 165.2 129 58.9
Thecc.K0008300 Theobroma cacao HOM05D004924 ORTHO05D005896 8.4e-39 164.1 98 72.4
AUR62006043 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.3e-36 156.8 115 62.6
AUR62035585 Chenopodium quinoa HOM05D004924 ORTHO05D005896 2.5e-35 152.5 124 56.5
MD09G1269100 Malus domestica HOM05D004924 ORTHO05D005896 3.7e-34 148.7 99 63.6
Lj2C517T7 Lonicera japonica HOM05D004924 ORTHO05D005896 2.4e-33 146.0 96 63.5
Gorai.004G266900 Gossypium raimondii HOM05D004924 ORTHO05D005896 4.5e-32 141.7 86 68.6
PRCOL_00006023 Prasinoderma coloniale HOM05D004924 ORTHO05D005896 9.3e-30 134.0 145 43.4
Nitab4.5_0006562g0060 Nicotiana tabacum HOM05D004924 ORTHO05D005896 1.3e-28 130.2 75 74.7
FAN28G0301 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.3e-26 123.6 70 74.3
Gohir.A06G089850 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.0e-24 116.3 112 50.0
Lj1P958T70 Lonicera japonica HOM05D004924 ORTHO05D005896 3.4e-24 115.5 74 66.2
Gohir.D08G250250 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.0e-20 104.0 63 69.8
Zm00001eb099180 Zea mays HOM05D004924 ORTHO05D005896 1.3e-20 103.6 80 57.5
Gohir.D06G065233 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.9e-19 99.8 74 58.1


User provided reference genes

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