Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.FGLE2H Arachis hypogaea HOM05D005422 ORTHO05D006578 0.0e+00 1245.3 619 100.0
arahy.Tifrunner.gnm1.ann1.3L5TD6 Arachis hypogaea HOM05D005422 ORTHO05D006578 0.0e+00 1226.8 619 98.4
Lalb_Chr04g0262801 Lupinus albus HOM05D005422 ORTHO05D006578 1.9e-278 962.2 623 76.2
Lj6g0021706 Lotus japonicus HOM05D005422 ORTHO05D006578 4.0e-276 954.5 625 77.1
TPR.G22445 Trifolium pratense HOM05D005422 ORTHO05D006578 1.8e-273 945.7 623 75.4
Medtr3g085750 Medicago truncatula HOM05D005422 ORTHO05D006578 4.1e-273 944.5 623 75.6
Ca_16485_v3 Cicer arietinum L. HOM05D005422 ORTHO05D006578 1.2e-272 943.0 624 75.3
Psat5g094440 Pisum sativum HOM05D005422 ORTHO05D006578 2.1e-269 932.2 623 74.5
Phvul.001G259300 Phaseolus vulgaris HOM05D005422 ORTHO05D006578 3.4e-267 924.9 629 74.6
Lj6g0001538 Lotus japonicus HOM05D005422 ORTHO05D006578 6.3e-266 920.6 626 74.4
VMungo1383G2526 Vigna mungo HOM05D005422 ORTHO05D006578 6.1e-261 904.0 627 73.4
Glyma.18G009300 Glycine max HOM05D005422 ORTHO05D006578 2.3e-260 902.1 624 73.4
QL03p054803 Quercus lobata HOM05D005422 ORTHO05D006578 1.9e-246 855.9 622 67.8
Potri.010G055900 Populus trichocarpa HOM05D005422 ORTHO05D006578 8.3e-242 840.5 621 66.0
Cfa009312 Carpinus fangiana HOM05D005422 ORTHO05D006578 3.2e-241 838.6 627 66.5
Manes.12G015200 Manihot esculenta HOM05D005422 ORTHO05D006578 3.5e-240 835.1 623 65.7
Cpa.g.sc43.8 Carica papaya HOM05D005422 ORTHO05D006578 1.9e-238 829.3 623 66.5
CiPaw.06G099500 Carya illinoinensis HOM05D005422 ORTHO05D006578 4.0e-236 821.6 623 65.2
Eucgr.B03458 Eucalyptus grandis HOM05D005422 ORTHO05D006578 2.0e-235 819.3 625 65.8
GSVIVG01010354001 Vitis vinifera HOM05D005422 ORTHO05D006578 1.3e-234 816.6 625 65.4
Thecc.02G273900 Theobroma cacao HOM05D005422 ORTHO05D006578 8.3e-234 813.9 624 65.7
RcHm_v2.0_Chr4g0431221 Rosa chinensis HOM05D005422 ORTHO05D006578 1.9e-233 812.8 625 65.3
Ciclev10030973m.g Citrus clementina HOM05D005422 ORTHO05D006578 1.7e-231 806.2 623 63.7
Gorai.009G333700 Gossypium raimondii HOM05D005422 ORTHO05D006578 3.0e-231 805.4 625 64.5
MD13G1111800 Malus domestica HOM05D005422 ORTHO05D006578 8.6e-231 803.9 623 64.7
Gohir.D05G312350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 7.3e-230 800.8 625 64.2
Sabra10G0049200 Salix brachista HOM05D005422 ORTHO05D006578 6.2e-229 797.7 621 63.4
PGR102G2427 Punica granatum HOM05D005422 ORTHO05D006578 2.0e-227 792.7 624 64.1
CSS0043806 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 2.6e-227 792.3 623 64.2
CSS0029300 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 1.3e-226 790.0 623 64.0
Prupe.1G233700 Prunus persica HOM05D005422 ORTHO05D006578 3.8e-226 788.5 626 63.9
FvH4_4g24380 Fragaria vesca HOM05D005422 ORTHO05D006578 2.3e-223 779.2 604 63.7
Atru.chr11.2241 Acer truncatum HOM05D005422 ORTHO05D006578 1.1e-222 776.9 629 62.6
Aqoxy5G03525 Aquilegia oxysepala HOM05D005422 ORTHO05D006578 3.3e-222 775.4 624 61.4
Atru.chr11.2256 Acer truncatum HOM05D005422 ORTHO05D006578 5.6e-222 774.6 629 62.5
Sc11g0000670 Simmondsia chinensis HOM05D005422 ORTHO05D006578 5.6e-222 774.6 622 61.9
Hund25438 Selenicereus undatus HOM05D005422 ORTHO05D006578 2.8e-221 772.3 655 59.4
TAR374G0226 Trochodendron aralioides HOM05D005422 ORTHO05D006578 1.4e-220 770.0 627 63.0
Haze_12366 Corylus avellana HOM05D005422 ORTHO05D006578 3.1e-220 768.8 627 62.2
Nn3g16548 Nelumbo nucifera HOM05D005422 ORTHO05D006578 9.9e-219 763.8 628 61.6
Sed0011369 Sechium edule HOM05D005422 ORTHO05D006578 1.3e-218 763.5 627 61.6
Duzib268G1013 Durio zibethinus HOM05D005422 ORTHO05D006578 2.4e-217 759.2 623 61.5
FAN22G2139 Fragaria x ananassa HOM05D005422 ORTHO05D000550 2.3e-215 752.7 625 61.1
CsaV3_1G006150 Cucumis sativus L. HOM05D005422 ORTHO05D006578 3.9e-215 751.9 625 60.2
MELO3C002044.2 Cucumis melo HOM05D005422 ORTHO05D006578 5.6e-214 748.0 625 60.0
Sopen05g009590 Solanum pennellii HOM05D005422 ORTHO05D006578 5.6e-214 748.0 622 60.3
FAN07G0746 Fragaria x ananassa HOM05D005422 ORTHO05D000550 7.3e-214 747.7 625 60.6
PGSC0003DMG400017439 Solanum tuberosum HOM05D005422 ORTHO05D006578 3.6e-213 745.3 623 60.4
Solyc05g014540.3 Solanum lycopersicum HOM05D005422 ORTHO05D006578 6.2e-213 744.6 622 60.1
THA.LOC104807895 Tarenaya hassleriana HOM05D005422 ORTHO05D006578 9.0e-212 740.7 621 59.7
AL2G26300 Arabidopsis lyrata HOM05D005422 ORTHO05D006578 1.5e-211 740.0 623 59.2
Thhalv10018287m.g Eutrema salsugineum HOM05D005422 ORTHO05D006578 2.9e-210 735.7 623 59.1
PSO063G3748 Papaver somniferum HOM05D005422 ORTHO05D006578 3.8e-210 735.3 626 59.4
PSO782G4908 Papaver somniferum HOM05D005422 ORTHO05D006578 3.8e-210 735.3 627 59.5
CARHR060210 Cardamine hirsuta HOM05D005422 ORTHO05D006578 5.4e-209 731.5 622 59.6
AT1G67630 Arabidopsis thaliana HOM05D005422 ORTHO05D006578 7.1e-209 731.1 621 58.5
Sp5g22630 Schrenkiella parvula HOM05D005422 ORTHO05D006578 7.1e-209 731.1 624 59.0
Carub.0002s1397 Capsella rubella HOM05D005422 ORTHO05D006578 2.7e-208 729.2 621 58.8
Lj6C821T7 Lonicera japonica HOM05D005422 ORTHO05D006578 4.6e-208 728.4 623 59.4
Dinv14796 Davidia involucrata HOM05D005422 ORTHO05D006578 1.3e-207 726.9 635 59.8
FAN12G3101 Fragaria x ananassa HOM05D005422 ORTHO05D006578 8.7e-207 724.2 692 55.3
FAN17G0355 Fragaria x ananassa HOM05D005422 ORTHO05D006578 8.7e-207 724.2 625 59.4
EL10Ac6g13434 Beta vulgaris HOM05D005422 ORTHO05D006578 1.9e-206 723.0 636 59.6
BcaB05g24303 Brassica carinata HOM05D005422 ORTHO05D006578 2.5e-206 722.6 621 58.3
Peaxi162Scf00128g00843 Petunia axillaris HOM05D005422 ORTHO05D006578 3.3e-206 722.2 621 58.5
COL.COLO4_23617 Corchorus olitorius HOM05D005422 ORTHO05D006578 9.6e-206 720.7 626 59.4
Actinidia33261 Actinidia chinensis HOM05D005422 ORTHO05D006578 8.1e-205 717.6 623 59.1
Oeu056686.1 Olea europaea HOM05D005422 ORTHO05D006578 8.1e-205 717.6 621 58.5
MD16G1111400 Malus domestica HOM05D005422 ORTHO05D006578 1.8e-204 716.5 574 63.2
CAN.G163.4 Capsicum annuum HOM05D005422 ORTHO05D006578 1.2e-203 713.8 622 58.5
Hma1.2p1_1340F.1_g276720 Hydrangea macrophylla HOM05D005422 ORTHO05D006578 1.2e-203 713.8 623 59.4
AUR62005568 Chenopodium quinoa HOM05D005422 ORTHO05D006578 2.6e-203 712.6 642 57.2
AUR62024162 Chenopodium quinoa HOM05D005422 ORTHO05D006578 4.5e-203 711.8 625 58.6
C02p23270 Brassica napus HOM05D005422 ORTHO05D006578 7.1e-201 704.5 621 57.5
BcaC03g14856 Brassica carinata HOM05D005422 ORTHO05D006578 9.3e-201 704.1 621 57.5
BolC2t08466H Brassica oleracea HOM05D005422 ORTHO05D006578 1.2e-200 703.7 621 57.2
Aa31LG4G12020 Aethionema arabicum HOM05D005422 ORTHO05D006578 2.3e-199 699.5 685 53.1
ClCG04G011650 Citrullus lanatus HOM05D005422 ORTHO05D006578 6.7e-199 698.0 619 58.3
BraA02t06501Z Brassica rapa HOM05D005422 ORTHO05D006578 1.5e-198 696.8 621 56.7
A02p14390 Brassica napus HOM05D005422 ORTHO05D006578 1.9e-198 696.4 621 57.0
HanXRQChr06g0174981 Helianthus annuus HOM05D005422 ORTHO05D006578 2.5e-198 696.0 622 56.4
CANSAT01G0865 Cannabis sativa HOM05D005422 ORTHO05D006578 1.4e-196 690.3 530 63.6
Duzib251G0558 Durio zibethinus HOM05D005422 ORTHO05D006578 1.5e-195 686.8 623 57.0
Glyma.11G247900 Glycine max HOM05D005422 ORTHO05D006578 2.2e-194 682.9 487 71.9
Nitab4.5_0000240g0030 Nicotiana tabacum HOM05D005422 ORTHO05D006578 2.2e-194 682.9 622 56.3
ECA246G0814 Erigeron canadensis HOM05D005422 ORTHO05D006578 3.8e-194 682.2 622 55.1
ATR0743G050 Amborella trichopoda HOM05D005422 ORTHO05D006578 1.9e-193 679.9 640 54.5
Migut.K00694 Erythranthe guttata HOM05D005422 ORTHO05D006578 3.5e-192 675.6 623 54.9
MBI18_g30536_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 4.6e-192 675.2 662 53.9
Cc11_g16560 Coffea canephora HOM05D005422 ORTHO05D006578 1.5e-190 670.2 627 54.7
Gohir.A05G311350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 1.3e-189 667.2 625 55.8
DCAR_024084 Daucus carota HOM05D005422 ORTHO05D006578 2.8e-189 666.0 588 58.2
MSTRG.7977 Avicennia marina HOM05D005422 ORTHO05D006578 1.4e-188 663.7 622 53.9
Lsat_1_v5_gn_3_29520 Lactuca sativa HOM05D005422 ORTHO05D006578 2.4e-188 662.9 627 55.2
Rhsim12G0105700 Rhododendron simsii HOM05D005422 ORTHO05D006578 4.1e-188 662.1 661 54.8
vmacro16136 Vaccinium macrocarpon HOM05D005422 ORTHO05D006578 3.9e-183 645.6 527 62.0
SGA_v2.0_scaffold46G17410 Striga asiatica HOM05D005422 ORTHO05D006578 4.6e-176 622.1 621 51.7
Zm00001eb409930 Zea mays HOM05D005422 ORTHO05D006578 1.3e-170 604.0 629 52.0
SEGI_16764 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 7.0e-164 581.6 651 48.1
SEGI_31313 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 7.0e-164 581.6 651 48.1
DCAR_013710 Daucus carota HOM05D005422 ORTHO05D006578 3.5e-163 579.3 621 50.2
SEGI_15215 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 4.5e-163 578.9 647 48.2
SHI17936 Sapria himalayana HOM05D005422 ORTHO05D006578 5.2e-159 565.5 621 49.9
Nitab4.5_0000581g0110 Nicotiana tabacum HOM05D005422 ORTHO05D006578 4.8e-157 558.9 615 49.8
HPP92_024300 Vanilla planifolia HOM05D005422 ORTHO05D006578 1.0e-151 541.2 628 48.2
unitig_749.g13303 Utricularia gibba HOM05D005422 ORTHO05D006578 1.3e-149 534.3 600 48.2
Mapoly0035s0099 Marchantia polymorpha HOM05D005422 ORTHO05D006578 8.8e-143 511.5 649 44.5
CDE09G1061 Ceratophyllum demersum HOM05D005422 ORTHO05D006578 4.1e-140 502.7 487 54.4
Pp3c10_15960 Physcomitrium patens HOM05D005422 ORTHO05D006578 4.0e-135 486.1 631 41.7
HPP92_024298 Vanilla planifolia HOM05D005422 ORTHO05D006578 6.4e-133 478.8 385 61.0
Os12g0242900 Oryza sativa ssp. japonica HOM05D005422 ORTHO05D006578 2.7e-131 473.4 405 58.5
SMO164G0100 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 4.1e-124 449.5 583 43.2
arahy.Tifrunner.gnm1.ann1.T7I6MJ Arachis hypogaea HOM05D005422 ORTHO05D006578 2.3e-119 433.7 214 99.5
AagrBONN_evm.TU.Sc2ySwM_228.1647 Anthoceros agrestis HOM05D005422 ORTHO05D006578 8.3e-117 425.2 471 47.3
CSS0043308 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 1.2e-115 421.4 405 57.0
CSS0016009 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 6.2e-112 409.1 408 54.7
CBR_g26038 Chara braunii HOM05D005422 ORTHO05D006578 1.6e-83 314.7 759 29.5
arahy.Tifrunner.gnm1.ann1.PQ2R0I Arachis hypogaea HOM05D005422 ORTHO05D006578 2.5e-73 280.8 143 96.5
MCO02G188 Micromonas commoda HOM05D005422 ORTHO05D006578 1.3e-72 278.5 672 31.0
PRCOL_00001924 Prasinoderma coloniale HOM05D005422 ORTHO05D006578 4.8e-72 276.6 621 30.6
SMO076G0002 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 6.7e-58 229.6 246 46.3
unitig_35.g30205 Utricularia gibba HOM05D005422 ORTHO05D006578 1.7e-56 224.9 271 45.8
Cre01.g017450 Chlamydomonas reinhardtii HOM05D005422 ORTHO05D006578 3.7e-56 223.8 402 34.3
CSS0044941 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 1.2e-51 208.8 130 76.9
CARHR058070 Cardamine hirsuta HOM05D005422 ORTHO05D006578 2.2e-48 198.0 165 61.8
arahy.Tifrunner.gnm1.ann1.IS07F8 Arachis hypogaea HOM05D005422 ORTHO05D006578 4.5e-46 190.3 95 97.9
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 2.8e-40 171.0 560 27.0
arahy.Tifrunner.gnm1.ann1.SR9TX3 Arachis hypogaea HOM05D005422 ORTHO05D001437 4.7e-35 153.7 80 95.0
Lsat_1_v5_gn_5_63620 Lactuca sativa HOM05D005422 ORTHO05D006040 1.8e-34 151.8 161 48.4
FvH4_4g24360 Fragaria vesca HOM05D005422 ORTHO05D006578 2.7e-30 137.9 126 58.7
HPP92_024297 Vanilla planifolia HOM05D005422 ORTHO05D006578 6.6e-29 133.3 151 49.0
Lsat_1_v5_gn_8_120961 Lactuca sativa HOM05D005422 ORTHO05D006578 2.1e-27 128.3 184 41.3
arahy.Tifrunner.gnm1.ann1.L1WA2E Arachis hypogaea HOM05D001562 ORTHO05D001437 8.0e-27 126.3 64 95.3
Lsat_1_v5_gn_5_146881 Lactuca sativa HOM05D005422 ORTHO05D019256 6.3e-24 116.7 170 39.4
arahy.Tifrunner.gnm1.ann1.E05V9C Arachis hypogaea HOM05D000386 ORTHO05D083937 1.6e-22 112.1 73 80.8
Lsat_1_v5_gn_2_95100 Lactuca sativa HOM05D005290 ORTHO05D006040 1.0e-18 99.4 169 36.7
Potri.008G178951 Populus trichocarpa HOM05D005422 ORTHO05D006578 1.8e-18 98.6 123 44.7
unitig_35.g30204 Utricularia gibba HOM05D005422 ORTHO05D006578 9.8e-17 92.8 111 48.6
Sabra08G0136500 Salix brachista HOM05D005422 ORTHO05D006578 1.3e-16 92.4 74 59.5
VMungo1215G3139 Vigna mungo HOM05D003635 ORTHO05D004283 7.0e-15 86.7 54 72.2
Rhsim03G0100700 Rhododendron simsii HOM05D005422 ORTHO05D006578 1.3e-13 82.4 131 35.9
SHI54583 Sapria himalayana HOM05D005422 ORTHO05D006578 2.1e-11 75.1 52 73.1
Lsat_1_v5_gn_7_52961 Lactuca sativa HOM05D001824 ORTHO05D006578 8.0e-11 73.2 69 56.5
C02p23310 Brassica napus HOM05D005422 ORTHO05D006578 1.2e-09 69.3 101 39.6
MBI10_g35396_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 1.2e-09 69.3 43 67.4
Lsat_1_v5_gn_3_78701 Lactuca sativa HOM05D005422 ORTHO05D006578 3.4e-09 67.8 72 52.8
Lsat_1_v5_gn_6_18500 Lactuca sativa HOM05D001824 ORTHO05D006578 1.7e-08 65.5 69 53.6
BcaC03g14863 Brassica carinata HOM05D000026 ORTHO05D000094 4.1e-07 60.8 51 56.9
arahy.Tifrunner.gnm1.ann1.CC58HJ Arachis hypogaea HOM05D058385 ORTHO05D083001 4.6e-06 57.4 31 83.9


User provided reference genes

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