Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.FF5BCH Arachis hypogaea HOM05D006382 ORTHO05D008938 3.3e-300 1034.2 521 100.0
arahy.Tifrunner.gnm1.ann1.Z348XU Arachis hypogaea HOM05D006382 ORTHO05D008938 5.8e-297 1023.5 527 98.3
Lj1g0001840 Lotus japonicus HOM05D006382 ORTHO05D008938 2.1e-238 828.9 548 76.6
Lalb_Chr19g0126881 Lupinus albus HOM05D006382 ORTHO05D008938 5.9e-233 810.8 537 76.9
Phvul.008G058200 Phaseolus vulgaris HOM05D006382 ORTHO05D008938 8.6e-232 807.0 531 76.5
Glyma.18G238400 Glycine max HOM05D006382 ORTHO05D008938 3.6e-230 801.6 537 74.9
Medtr7g079030 Medicago truncatula HOM05D006382 ORTHO05D008938 4.7e-230 801.2 530 77.0
VMungo1383G3370 Vigna mungo HOM05D006382 ORTHO05D008938 1.8e-229 799.3 528 75.0
TPR.G35789 Trifolium pratense HOM05D006382 ORTHO05D008938 2.3e-229 798.9 493 80.5
Psat3g105480 Pisum sativum HOM05D006382 ORTHO05D008938 1.3e-227 793.1 527 75.9
Glyma.09G254600 Glycine max HOM05D006382 ORTHO05D008938 4.6e-225 784.6 530 74.7
Ca_07943_v3 Cicer arietinum L. HOM05D006382 ORTHO05D008938 3.3e-223 778.5 461 81.3
TWI59G0052 Tripterygium wilfordii HOM05D006382 ORTHO05D008938 6.6e-216 754.2 490 75.1
Thecc.01G352300 Theobroma cacao HOM05D006382 ORTHO05D008938 4.7e-214 748.0 529 69.2
Atru.chr5.564 Acer truncatum HOM05D006382 ORTHO05D008938 1.4e-213 746.5 473 75.1
Duzib133G1372 Durio zibethinus HOM05D006382 ORTHO05D008938 1.4e-213 746.5 533 70.2
CiPaw.01G067600 Carya illinoinensis HOM05D006382 ORTHO05D008938 3.1e-213 745.3 533 69.8
QL04p055600 Quercus lobata HOM05D006382 ORTHO05D008938 6.8e-213 744.2 527 69.4
Cfa003871 Carpinus fangiana HOM05D006382 ORTHO05D008938 2.0e-212 742.7 527 69.8
Prupe.2G177700 Prunus persica HOM05D006382 ORTHO05D008938 9.9e-212 740.3 531 69.1
MSTRG.17299 Avicennia marina HOM05D006382 ORTHO05D008938 2.2e-211 739.2 485 73.8
Ciclev10019743m.g Citrus clementina HOM05D006382 ORTHO05D008938 4.9e-211 738.0 497 72.2
Dinv43864 Davidia involucrata HOM05D006382 ORTHO05D008938 1.1e-210 736.9 486 72.6
ClCG05G001220 Citrullus lanatus HOM05D006382 ORTHO05D008938 2.4e-210 735.7 480 72.7
MD01G1071500 Malus domestica HOM05D006382 ORTHO05D008938 3.2e-210 735.3 535 69.0
Cpa.g.sc11.72 Carica papaya HOM05D006382 ORTHO05D008938 2.1e-209 732.6 486 72.2
Gohir.A11G092400 Gossypium hirsutum HOM05D006382 ORTHO05D008938 2.1e-209 732.6 531 68.0
Nitab4.5_0000915g0130 Nicotiana tabacum HOM05D006382 ORTHO05D008938 2.7e-209 732.3 483 72.5
SalBow3G4256 Salvia bowleyana HOM05D006382 ORTHO05D008938 4.6e-209 731.5 475 73.9
Oeu063675.1 Olea europaea HOM05D006382 ORTHO05D008938 6.0e-209 731.1 488 71.5
Sed0009049 Sechium edule HOM05D006382 ORTHO05D008938 6.0e-209 731.1 496 71.6
Potri.002G164700 Populus trichocarpa HOM05D006382 ORTHO05D008938 7.8e-209 730.7 467 73.4
CSS0000318 Camellia sinensis var. sinensis HOM05D006382 ORTHO05D008938 1.0e-208 730.3 488 71.7
Gorai.007G103500 Gossypium raimondii HOM05D006382 ORTHO05D008938 1.3e-208 729.9 528 68.6
Eucgr.D02325 Eucalyptus grandis HOM05D006382 ORTHO05D008938 2.3e-208 729.2 472 74.2
Nitab4.5_0010695g0050 Nicotiana tabacum HOM05D006382 ORTHO05D008938 3.9e-208 728.4 502 70.3
Peaxi162Scf00020g01516 Petunia axillaris HOM05D006382 ORTHO05D008938 3.9e-208 728.4 527 68.3
CSS0031254 Camellia sinensis var. sinensis HOM05D006382 ORTHO05D008938 6.6e-208 727.6 500 69.6
Actinidia20164 Actinidia chinensis HOM05D006382 ORTHO05D008938 1.1e-207 726.9 472 73.9
Sabra02G0146800 Salix brachista HOM05D006382 ORTHO05D008938 1.1e-207 726.9 462 72.5
Rhsim07G0010300 Rhododendron simsii HOM05D006382 ORTHO05D008938 1.5e-207 726.5 519 68.2
GSVIVG01026968001 Vitis vinifera HOM05D006382 ORTHO05D008938 1.5e-207 726.5 521 68.1
RcHm_v2.0_Chr1g0357731 Rosa chinensis HOM05D006382 ORTHO05D008938 2.5e-207 725.7 528 68.2
Hma1.2p1_0335F.1_g128860 Hydrangea macrophylla HOM05D006382 ORTHO05D008938 3.3e-207 725.3 470 73.6
SGA_v2.0_scaffold4G02278 Striga asiatica HOM05D006382 ORTHO05D008938 3.3e-207 725.3 465 74.6
Thhalv10005890m.g Eutrema salsugineum HOM05D006382 ORTHO05D008938 4.3e-207 724.9 483 72.0
Sopen01g038910 Solanum pennellii HOM05D006382 ORTHO05D008938 4.3e-207 724.9 520 68.8
PGSC0003DMG400000065 Solanum tuberosum HOM05D006382 ORTHO05D008938 4.3e-207 724.9 521 68.9
Carub.0005s2823 Capsella rubella HOM05D006382 ORTHO05D008938 9.5e-207 723.8 463 73.9
FAN01G1899 Fragaria x ananassa HOM05D006382 ORTHO05D008938 9.5e-207 723.8 487 71.3
Atru.BG.55.p Acer truncatum HOM05D006382 ORTHO05D008938 3.6e-206 721.8 458 75.1
Solyc01g095120.3 Solanum lycopersicum HOM05D006382 ORTHO05D008938 3.6e-206 721.8 524 68.1
AL5G43900 Arabidopsis lyrata HOM05D006382 ORTHO05D008938 4.7e-206 721.5 463 73.4
AT3G61540 Arabidopsis thaliana HOM05D006382 ORTHO05D008938 8.1e-206 720.7 463 74.3
BolC6t37923H Brassica oleracea HOM05D006382 ORTHO05D008938 8.1e-206 720.7 484 72.3
A07p25560 Brassica napus HOM05D006382 ORTHO05D008938 1.1e-205 720.3 484 72.1
BraA07t30197Z Brassica rapa HOM05D006382 ORTHO05D008938 1.4e-205 719.9 484 71.7
BcaC08g45134 Brassica carinata HOM05D006382 ORTHO05D008938 1.8e-205 719.5 484 71.9
C06p27550 Brassica napus HOM05D006382 ORTHO05D008938 1.8e-205 719.5 484 71.9
MELO3C006077.2 Cucumis melo HOM05D006382 ORTHO05D008938 2.4e-205 719.2 525 68.0
Aqoxy7G00230 Aquilegia oxysepala HOM05D006382 ORTHO05D008938 4.0e-205 718.4 459 75.2
CARHR171860 Cardamine hirsuta HOM05D006382 ORTHO05D008938 4.0e-205 718.4 462 73.8
FvH4_7g15410 Fragaria vesca HOM05D006382 ORTHO05D008938 8.9e-205 717.2 518 68.3
vmacro13226 Vaccinium macrocarpon HOM05D006382 ORTHO05D008938 2.6e-204 715.7 494 69.4
Sp5g01870 Schrenkiella parvula HOM05D006382 ORTHO05D008938 3.4e-204 715.3 535 66.4
Nn1g01689 Nelumbo nucifera HOM05D006382 ORTHO05D008938 1.7e-203 713.0 472 72.0
BcaB02g07372 Brassica carinata HOM05D006382 ORTHO05D008938 3.8e-203 711.8 461 74.0
CANSAT56G1207 Cannabis sativa HOM05D006382 ORTHO05D008938 4.9e-203 711.4 486 70.8
Haze_15566 Corylus avellana HOM05D006382 ORTHO05D008938 1.1e-202 710.3 548 65.1
CsaV3_3G008570 Cucumis sativus L. HOM05D006382 ORTHO05D008938 1.1e-202 710.3 527 66.8
THA.LOC104827604 Tarenaya hassleriana HOM05D006382 ORTHO05D008938 7.1e-202 707.6 465 72.3
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 1.6e-201 706.4 465 73.1
PSO266G0056 Papaver somniferum HOM05D006382 ORTHO05D008938 1.6e-201 706.4 470 73.4
PSO384G0256 Papaver somniferum HOM05D006382 ORTHO05D008938 1.6e-201 706.4 480 71.7
MBI06_g33533_MAGBIO Magnolia biondii HOM05D006382 ORTHO05D008938 1.3e-200 703.4 452 72.3
HanXRQChr17g0562131 Helianthus annuus HOM05D006382 ORTHO05D008938 3.0e-200 702.2 471 70.1
Lj9C589T7 Lonicera japonica HOM05D006382 ORTHO05D008938 8.7e-200 700.7 504 67.7
Cc02_g38570 Coffea canephora HOM05D006382 ORTHO05D008938 1.5e-199 699.9 474 70.9
FAN06G2792 Fragaria x ananassa HOM05D006382 ORTHO05D008938 3.3e-199 698.7 547 64.4
EL10Ac1g00353 Beta vulgaris HOM05D006382 ORTHO05D008938 3.6e-198 695.3 477 69.2
FAN03G1976 Fragaria x ananassa HOM05D006382 ORTHO05D008938 4.7e-198 694.9 511 66.9
DCAR_005361 Daucus carota HOM05D006382 ORTHO05D008938 2.4e-197 692.6 489 68.1
FAN06G0271 Fragaria x ananassa HOM05D006382 ORTHO05D008938 2.6e-196 689.1 459 71.7
Sc01g0003200 Simmondsia chinensis HOM05D006382 ORTHO05D008938 3.4e-196 688.7 472 69.1
AUR62004414 Chenopodium quinoa HOM05D006382 ORTHO05D008938 5.8e-196 688.0 458 70.3
HPP92_008800 Vanilla planifolia HOM05D006382 ORTHO05D008938 9.9e-196 687.2 456 70.0
ECA234G1133 Erigeron canadensis HOM05D006382 ORTHO05D008938 2.2e-195 686.0 455 70.5
ATR0721G029 Amborella trichopoda HOM05D006382 ORTHO05D008938 2.5e-191 672.5 457 70.9
CDE10G0280 Ceratophyllum demersum HOM05D006382 ORTHO05D008938 1.4e-189 666.8 459 69.1
Lsat_1_v5_gn_4_35160 Lactuca sativa HOM05D006382 ORTHO05D008938 1.2e-188 663.7 485 66.2
Aa31LG10G15440 Aethionema arabicum HOM05D006382 ORTHO05D008938 6.7e-184 647.9 445 70.3
CANSAT56G3955 Cannabis sativa HOM05D006382 ORTHO05D008938 5.6e-183 644.8 471 65.8
unitig_747.g21323 Utricularia gibba HOM05D000887 ORTHO05D000908 1.1e-178 630.6 463 66.7
COL.COLO4_12779 Corchorus olitorius HOM05D006382 ORTHO05D008938 3.7e-174 615.5 461 65.9
Pp3c20_22770 Physcomitrium patens HOM05D006382 ORTHO05D008938 7.6e-172 607.8 454 62.1
AUR62022620 Chenopodium quinoa HOM05D006382 ORTHO05D008938 1.2e-169 600.5 500 60.0
Mapoly0179s0013 Marchantia polymorpha HOM05D006382 ORTHO05D008938 3.0e-168 595.9 491 59.7
CAN.G78.131 Capsicum annuum HOM05D006382 ORTHO05D008938 3.3e-167 592.4 367 75.7
SMO134G0292 Selaginella moellendorffii HOM05D006382 ORTHO05D008938 1.6e-166 590.1 458 61.4
Ah.05g180140 Amaranthus hybridus HOM05D006382 ORTHO05D008938 7.7e-164 581.3 476 59.2
Migut.B01800 Erythranthe guttata HOM05D006382 ORTHO05D008938 6.7e-160 568.2 495 58.0
Gohir.D11G097200 Gossypium hirsutum HOM05D006382 ORTHO05D008938 8.5e-155 551.2 422 65.4
Manes.05G029200 Manihot esculenta HOM05D006382 ORTHO05D008938 2.2e-147 526.6 422 63.5
Oeu063676.1 Olea europaea HOM05D006382 ORTHO05D008938 5.5e-138 495.4 478 55.9
TAR629G1903 Trochodendron aralioides HOM05D006382 ORTHO05D008938 4.7e-129 465.7 321 71.0
Cre03.g193700 Chlamydomonas reinhardtii HOM05D006382 ORTHO05D008938 5.9e-116 422.2 455 47.7
Potri.014G090601 Populus trichocarpa HOM05D006382 ORTHO05D008938 6.1e-113 412.1 335 64.5
MCO14G065 Micromonas commoda HOM05D006382 ORTHO05D008938 2.0e-108 397.1 480 46.0
Zm00001eb375690 Zea mays HOM05D006382 ORTHO05D008938 1.0e-99 368.2 280 66.1
PRCOL_00004635 Prasinoderma coloniale HOM05D006382 ORTHO05D008938 1.7e-91 340.9 480 41.5
Cfa025852 Carpinus fangiana HOM05D006382 ORTHO05D008938 7.1e-77 292.4 456 38.4
Os06g0163600 Oryza sativa ssp. japonica HOM05D006382 ORTHO05D008938 1.7e-38 164.9 100 74.0
SMO139G0016 Selaginella moellendorffii HOM05D006382 ORTHO05D376983 1.9e-37 161.4 231 36.8
Hma1.2p1_0036F.1_g022810 Hydrangea macrophylla HOM05D006382 ORTHO05D228417 2.8e-33 147.5 95 73.7
Hma1.2p1_0036F.1_g022815 Hydrangea macrophylla HOM05D006382 ORTHO05D228242 2.8e-33 147.5 95 73.7
Hma1.2p1_0515F.1_g170355 Hydrangea macrophylla HOM05D006382 ORTHO05D228454 2.8e-33 147.5 95 73.7
Hma1.2p1_1019F.1_g248455 Hydrangea macrophylla HOM05D006382 ORTHO05D228422 2.8e-33 147.5 95 73.7
SMO165G0168 Selaginella moellendorffii HOM05D006382 ORTHO05D374182 6.5e-22 109.8 285 30.5
BolC4t24936H Brassica oleracea HOM05D006382 ORTHO05D024383 2.5e-21 107.8 78 66.7
C04p33670 Brassica napus HOM05D006382 ORTHO05D024383 2.2e-17 94.7 64 70.3
BcaB04g18088 Brassica carinata HOM05D006382 ORTHO05D024383 8.3e-09 66.2 48 72.9
CsaV3_3G008600 Cucumis sativus L. HOM05D006382 ORTHO05D172594 7.0e-08 63.2 40 67.5
Actinidia17930 Actinidia chinensis HOM05D006382 ORTHO05D008938 1.6e-07 62.0 41 75.6
Ah.05g180150 Amaranthus hybridus HOM05D006382 ORTHO05D060446 2.7e-07 61.2 76 47.4


User provided reference genes

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