Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.FEJ64N Arachis hypogaea HOM05D001925 ORTHO05D005701 3.0e-218 761.5 381 100.0
arahy.Tifrunner.gnm1.ann1.IM3547 Arachis hypogaea HOM05D001925 ORTHO05D005701 3.0e-141 505.8 309 88.3
arahy.Tifrunner.gnm1.ann1.9GVB5D Arachis hypogaea HOM05D001925 ORTHO05D005701 1.9e-103 380.2 229 87.3
arahy.Tifrunner.gnm1.ann1.NC5V2N Arachis hypogaea HOM05D001925 ORTHO05D005701 2.5e-103 379.8 229 87.8
arahy.Tifrunner.gnm1.ann1.SID920 Arachis hypogaea HOM05D001925 ORTHO05D005701 3.6e-86 322.8 224 79.0
arahy.Tifrunner.gnm1.ann1.69YTHK Arachis hypogaea HOM05D001925 ORTHO05D005701 2.1e-78 297.0 229 70.7
arahy.Tifrunner.gnm1.ann1.IR4EKV Arachis hypogaea HOM05D001925 ORTHO05D005701 6.1e-78 295.4 229 70.3
TPR.G37845 Trifolium pratense HOM05D001925 ORTHO05D005701 3.7e-75 286.2 212 71.7
Ca_07928_v3 Cicer arietinum L. HOM05D001925 ORTHO05D005701 5.4e-74 282.3 212 72.2
Lj1g0000866 Lotus japonicus HOM05D001925 ORTHO05D005701 5.4e-74 282.3 238 67.2
Medtr7g077840 Medicago truncatula HOM05D001925 ORTHO05D005701 1.6e-73 280.8 210 71.0
Psat4g001160 Pisum sativum HOM05D001925 ORTHO05D005701 5.0e-72 275.8 212 69.3
Glyma.18G234000 Glycine max HOM05D001925 ORTHO05D005701 5.6e-71 272.3 286 57.0
Glyma.09G258700 Glycine max HOM05D001925 ORTHO05D005701 7.3e-71 271.9 239 64.4
VMungo1383G1901 Vigna mungo HOM05D001925 ORTHO05D005701 1.4e-69 267.7 238 64.7
Phvul.008G061800 Phaseolus vulgaris HOM05D001925 ORTHO05D005701 6.8e-69 265.4 238 64.3
CiPaw.01G062800 Carya illinoinensis HOM05D001925 ORTHO05D005701 2.6e-68 263.5 328 49.7
arahy.Tifrunner.gnm1.ann1.D25PMP Arachis hypogaea HOM05D001925 ORTHO05D005701 3.4e-68 263.1 142 96.5
QL04p053597 Quercus lobata HOM05D001925 ORTHO05D005701 1.4e-66 257.7 210 64.8
TAR636G2317 Trochodendron aralioides HOM05D001925 ORTHO05D005701 1.4e-66 257.7 275 53.8
GSVIVG01008477001 Vitis vinifera HOM05D001925 ORTHO05D005701 2.7e-65 253.4 211 64.0
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 3.5e-65 253.1 238 60.1
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 4.6e-65 252.7 238 60.5
Sabra14G0062200 Salix brachista HOM05D001925 ORTHO05D005701 4.6e-65 252.7 208 64.4
Potri.014G085900 Populus trichocarpa HOM05D001925 ORTHO05D005701 1.0e-64 251.5 208 64.4
RcHm_v2.0_Chr2g0161261 Rosa chinensis HOM05D001925 ORTHO05D005701 1.3e-64 251.1 332 48.5
Actinidia10039 Actinidia chinensis HOM05D001925 ORTHO05D005701 1.7e-64 250.8 239 59.0
FvH4_7g14490 Fragaria vesca HOM05D001925 ORTHO05D005701 2.5e-63 246.9 238 60.5
Manes.05G033300 Manihot esculenta HOM05D001925 ORTHO05D005701 4.3e-63 246.1 200 64.0
vmacro13268 Vaccinium macrocarpon HOM05D001925 ORTHO05D005701 4.3e-63 246.1 211 62.6
RcHm_v2.0_Chr1g0355901 Rosa chinensis HOM05D001925 ORTHO05D005701 1.6e-62 244.2 199 66.8
Gorai.007G100400 Gossypium raimondii HOM05D001925 ORTHO05D005701 2.8e-62 243.4 375 43.2
Gohir.A11G089700 Gossypium hirsutum HOM05D001925 ORTHO05D005701 4.7e-62 242.7 375 43.5
CSS0009302 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 1.1e-61 241.5 223 61.9
CSS0022743 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 1.1e-61 241.5 223 61.9
Gohir.D11G094000 Gossypium hirsutum HOM05D001925 ORTHO05D005701 1.1e-61 241.5 284 51.4
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 1.8e-61 240.7 201 64.2
Duzib138G1334 Durio zibethinus HOM05D001925 ORTHO05D005701 3.1e-61 240.0 210 59.5
Rhsim07G0013900 Rhododendron simsii HOM05D001925 ORTHO05D005701 6.8e-61 238.8 213 61.0
MBI04_g28752_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 3.4e-60 236.5 212 59.9
Nn6g33390 Nelumbo nucifera HOM05D001925 ORTHO05D005701 7.5e-60 235.3 244 54.9
Lj6A572T62 Lonicera japonica HOM05D001925 ORTHO05D005701 1.3e-59 234.6 209 59.8
Eucgr.D01236 Eucalyptus grandis HOM05D001925 ORTHO05D005701 1.7e-59 234.2 200 61.5
THA.LOC104825846 Tarenaya hassleriana HOM05D001925 ORTHO05D005701 2.2e-59 233.8 210 58.6
Atru.chr5.509 Acer truncatum HOM05D001925 ORTHO05D005701 2.9e-59 233.4 234 55.1
Lalb_Chr13g0304081 Lupinus albus HOM05D001925 ORTHO05D005701 6.4e-59 232.3 238 58.8
MD01G1065000 Malus domestica HOM05D001925 ORTHO05D005701 6.4e-59 232.3 231 58.9
CANSAT56G3724 Cannabis sativa HOM05D001925 ORTHO05D005701 8.3e-59 231.9 238 57.6
SGA_v2.0_scaffold4G02302 Striga asiatica HOM05D001925 ORTHO05D005701 8.3e-59 231.9 267 50.9
Lj6A578T43 Lonicera japonica HOM05D001925 ORTHO05D005701 1.1e-58 231.5 209 59.3
Ciclev10019660m.g Citrus clementina HOM05D001925 ORTHO05D005701 1.4e-58 231.1 210 58.6
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 1.4e-58 231.1 285 51.2
Eucgr.L01587 Eucalyptus grandis HOM05D001925 ORTHO05D005701 1.4e-58 231.1 200 60.5
Nitab4.5_0006018g0050 Nicotiana tabacum HOM05D001925 ORTHO05D005701 1.4e-58 231.1 238 58.4
SalBow3G0216 Salvia bowleyana HOM05D001925 ORTHO05D005701 1.4e-58 231.1 201 62.2
PGR004G0833 Punica granatum HOM05D001925 ORTHO05D005701 2.4e-58 230.3 229 56.8
Thecc.01G357800 Theobroma cacao HOM05D001925 ORTHO05D005701 5.4e-58 229.2 285 50.9
Aa31LG2G20640 Aethionema arabicum HOM05D001925 ORTHO05D005701 7.1e-58 228.8 210 58.1
Nitab4.5_0000583g0200 Nicotiana tabacum HOM05D001925 ORTHO05D005701 1.2e-57 228.0 238 58.0
TWI73G0882 Tripterygium wilfordii HOM05D001925 ORTHO05D005701 4.6e-57 226.1 238 53.4
Prupe.2G172000 Prunus persica HOM05D001925 ORTHO05D005701 6.0e-57 225.7 339 44.8
Peaxi162Scf00020g00723 Petunia axillaris HOM05D001925 ORTHO05D005701 7.8e-57 225.3 238 56.3
Solyc01g094760.3 Solanum lycopersicum HOM05D001925 ORTHO05D005701 1.3e-56 224.6 195 63.1
Sopen01g038540 Solanum pennellii HOM05D001925 ORTHO05D005701 1.3e-56 224.6 195 63.1
Cpa.g.sc11.17 Carica papaya HOM05D001925 ORTHO05D005701 2.3e-56 223.8 210 57.6
AL7G22330 Arabidopsis lyrata HOM05D001925 ORTHO05D005701 3.0e-56 223.4 210 56.2
Oeu015817.1 Olea europaea HOM05D001925 ORTHO05D005701 3.0e-56 223.4 200 59.5
CARHR237820 Cardamine hirsuta HOM05D001925 ORTHO05D005701 5.1e-56 222.6 210 56.7
PGSC0003DMG400000174 Solanum tuberosum HOM05D001925 ORTHO05D005701 5.1e-56 222.6 195 63.1
CAN.G78.90 Capsicum annuum HOM05D001925 ORTHO05D005701 1.5e-55 221.1 238 55.5
BcaB02g07621 Brassica carinata HOM05D001925 ORTHO05D005701 3.3e-55 219.9 210 54.3
BcaB02g07622 Brassica carinata HOM05D001925 ORTHO05D005701 3.3e-55 219.9 210 54.3
Carub.0007s1073 Capsella rubella HOM05D001925 ORTHO05D005701 4.3e-55 219.5 210 55.7
A07p23240 Brassica napus HOM05D001925 ORTHO05D005701 5.6e-55 219.2 210 54.3
BraA07t29988Z Brassica rapa HOM05D001925 ORTHO05D005701 5.6e-55 219.2 210 54.3
AT4G29910 Arabidopsis thaliana HOM05D001925 ORTHO05D005701 9.5e-55 218.4 210 55.2
Cc02_g38160 Coffea canephora HOM05D001925 ORTHO05D005701 1.2e-54 218.0 238 54.2
Migut.B01766 Erythranthe guttata HOM05D001925 ORTHO05D005701 1.2e-54 218.0 197 60.4
DCAR_007446 Daucus carota HOM05D001925 ORTHO05D005701 2.8e-54 216.9 213 56.8
BcaC08g44822 Brassica carinata HOM05D001925 ORTHO05D005701 3.6e-54 216.5 210 53.3
Sp5g05460 Schrenkiella parvula HOM05D001925 ORTHO05D005701 3.6e-54 216.5 210 54.8
Sc01g0003490 Simmondsia chinensis HOM05D001925 ORTHO05D005701 3.6e-54 216.5 203 57.6
TPR.G26686 Trifolium pratense HOM05D001925 ORTHO05D005701 3.6e-54 216.5 170 67.6
CsaV3_6G000620 Cucumis sativus L. HOM05D001925 ORTHO05D005701 8.1e-54 215.3 198 60.1
Lj7A511T78 Lonicera japonica HOM05D001925 ORTHO05D005701 1.1e-53 214.9 197 58.9
Hund16654 Selenicereus undatus HOM05D001925 ORTHO05D005701 3.1e-53 213.4 212 54.7
C06p24120 Brassica napus HOM05D001925 ORTHO05D005701 4.0e-53 213.0 210 52.9
BolC6t37570H Brassica oleracea HOM05D001925 ORTHO05D005701 5.2e-53 212.6 210 52.9
MELO3C021204.2 Cucumis melo HOM05D001925 ORTHO05D005701 6.8e-53 212.2 198 59.6
ClCG06G003620 Citrullus lanatus HOM05D001925 ORTHO05D005701 1.5e-52 211.1 196 59.2
Sed0000605 Sechium edule HOM05D001925 ORTHO05D005701 1.5e-52 211.1 198 59.1
Carub.0002s1689 Capsella rubella HOM05D001925 ORTHO05D005701 2.0e-52 210.7 210 53.8
ECA236G3836 Erigeron canadensis HOM05D001925 ORTHO05D005701 5.8e-52 209.1 236 52.1
EL10Ac1g00402 Beta vulgaris HOM05D001925 ORTHO05D005701 8.3e-51 205.3 213 54.0
ATR0068G004 Amborella trichopoda HOM05D001925 ORTHO05D005701 3.2e-50 203.4 204 54.9
FAN03G1293 Fragaria x ananassa HOM05D001925 ORTHO05D005701 3.2e-50 203.4 238 54.2
FAN06G1763 Fragaria x ananassa HOM05D001925 ORTHO05D005701 3.2e-50 203.4 238 54.2
CDE08G0676 Ceratophyllum demersum HOM05D001925 ORTHO05D005701 7.1e-50 202.2 197 55.8
HanXRQChr04g0121151 Helianthus annuus HOM05D001925 ORTHO05D005701 7.1e-50 202.2 216 56.0
FAN06G3551 Fragaria x ananassa HOM05D001925 ORTHO05D005701 9.2e-50 201.8 238 53.8
FAN10G1478 Fragaria x ananassa HOM05D001925 ORTHO05D005701 9.2e-50 201.8 238 53.8
FAN10G3665 Fragaria x ananassa HOM05D001925 ORTHO05D005701 9.2e-50 201.8 238 53.8
Ah.05g180520 Amaranthus hybridus HOM05D001925 ORTHO05D001453 1.6e-49 201.1 241 49.8
Aqoxy2G04021 Aquilegia oxysepala HOM05D001925 ORTHO05D005701 2.1e-49 200.7 242 50.8
Lsat_1_v5_gn_7_4881 Lactuca sativa HOM05D001925 ORTHO05D005701 2.7e-49 200.3 215 51.2
AUR62004371 Chenopodium quinoa HOM05D001925 ORTHO05D005701 3.5e-49 199.9 258 48.1
PSO384G0118 Papaver somniferum HOM05D001925 ORTHO05D005701 1.0e-48 198.4 201 56.2
Thhalv10005869m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 3.0e-48 196.8 210 52.4
HPP92_019868 Vanilla planifolia HOM05D001925 ORTHO05D005701 3.0e-48 196.8 282 45.0
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 6.6e-48 195.7 238 51.7
Oeu050467.2 Olea europaea HOM05D001925 ORTHO05D005701 6.6e-48 195.7 198 54.0
AUR62022580 Chenopodium quinoa HOM05D001925 ORTHO05D005701 1.1e-45 188.3 264 47.0
Zm00001eb214490 Zea mays HOM05D001925 ORTHO05D005701 1.4e-45 188.0 240 46.7
ECA236G4017 Erigeron canadensis HOM05D001925 ORTHO05D005701 1.8e-45 187.6 238 48.3
Os03g0759500 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D005701 2.6e-44 183.7 240 46.2
SEGI_03119 Sequoiadendron giganteum HOM05D001925 ORTHO05D005701 1.9e-42 177.6 200 47.5
BcaC07g40027 Brassica carinata HOM05D001925 ORTHO05D005701 7.6e-36 155.6 210 45.2
MD07G1135400 Malus domestica HOM05D001925 ORTHO05D005701 7.6e-36 155.6 264 41.3
PSO339G3045 Papaver somniferum HOM05D001925 ORTHO05D005701 2.4e-34 150.6 215 46.0
AagrBONN_evm.TU.Sc2ySwM_368.2511 Anthoceros agrestis HOM05D001925 ORTHO05D005701 1.9e-31 141.0 208 39.9
FvH4_2g10060 Fragaria vesca HOM05D001925 ORTHO05D005701 4.3e-31 139.8 192 48.4
SMO147G0283 Selaginella moellendorffii HOM05D001925 ORTHO05D005701 1.2e-28 131.7 282 34.0
Mapoly0177s0008 Marchantia polymorpha HOM05D001925 ORTHO05D005701 2.1e-25 120.9 239 33.9
Pp3c17_13600 Physcomitrium patens HOM05D001925 ORTHO05D005701 2.1e-25 120.9 202 36.1
BolC8t50859H Brassica oleracea HOM05D001925 ORTHO05D005701 5.6e-23 112.8 257 35.4
C08p32440 Brassica napus HOM05D001925 ORTHO05D005701 7.4e-23 112.5 198 38.9
arahy.Tifrunner.gnm1.ann1.K5I42B Arachis hypogaea HOM05D000040 ORTHO05D002507 6.2e-22 109.4 56 98.2
arahy.Tifrunner.gnm1.ann1.PAG1M8 Arachis hypogaea HOM05D000068 ORTHO05D016561 6.2e-22 109.4 56 98.2
arahy.Tifrunner.gnm1.ann1.ENMK2L Arachis hypogaea HOM05D000068 ORTHO05D016561 8.1e-22 109.0 56 98.2
arahy.Tifrunner.gnm1.ann1.E1W7E8 Arachis hypogaea HOM05D000068 ORTHO05D016561 1.4e-21 108.2 65 86.2
Zm00001eb057980 Zea mays HOM05D001925 ORTHO05D005701 2.2e-11 74.3 225 30.2
BraA09t40455Z Brassica rapa HOM05D001925 ORTHO05D005701 5.5e-10 69.7 63 57.1
Potri.001G135975 Populus trichocarpa HOM05D001925 ORTHO05D005701 4.6e-09 66.6 135 34.8
A09p50040 Brassica napus HOM05D001925 ORTHO05D005701 1.5e-07 61.6 48 62.5
CBR_g58810 Chara braunii HOM05D001925 ORTHO05D005701 7.4e-07 59.3 60 50.0


User provided reference genes

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